mRNA_L-elsbetiae_contig7423.16305.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7423.16305.1
Unique NamemRNA_L-elsbetiae_contig7423.16305.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7423.16305.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7423contigL-elsbetiae_contig7423:2344..3919 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size564
Cds size435
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7423.16305.1prot_L-elsbetiae_contig7423.16305.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7423 2344..3791 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816826.8667815-CDS-L-elsbetiae_contig7423:2343..25441622816826.8667815-CDS-L-elsbetiae_contig7423:2343..2544Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7423 2344..2544 -
1691683843.4072845-CDS-L-elsbetiae_contig7423:2343..25441691683843.4072845-CDS-L-elsbetiae_contig7423:2343..2544Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7423 2344..2544 -
1622816826.8773973-CDS-L-elsbetiae_contig7423:3557..37911622816826.8773973-CDS-L-elsbetiae_contig7423:3557..3791Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7423 3558..3791 -
1691683843.4338346-CDS-L-elsbetiae_contig7423:3557..37911691683843.4338346-CDS-L-elsbetiae_contig7423:3557..3791Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7423 3558..3791 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816826.8885705-UTR-L-elsbetiae_contig7423:3791..39191622816826.8885705-UTR-L-elsbetiae_contig7423:3791..3919Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7423 3792..3919 -
1691683843.4460552-UTR-L-elsbetiae_contig7423:3791..39191691683843.4460552-UTR-L-elsbetiae_contig7423:3791..3919Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7423 3792..3919 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7423.16305.1

>prot_L-elsbetiae_contig7423.16305.1 ID=prot_L-elsbetiae_contig7423.16305.1|Name=mRNA_L-elsbetiae_contig7423.16305.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=145bp
MTVARTQQQQQRRGYCWVLRVLRVPLLCVAAASSERSCLLTKKAFVAPPS
SGVGLLVPSDLGGGLLAKSSTRRPCTRKLLPPLLGPDGSHDSLGRPPPNP
AEKGGSGSGSGGRPGRSRAPCRGVAGPAPWTRKASMLAAAAPHVG
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mRNA from alignment at L-elsbetiae_contig7423:2344..3919-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7423.16305.1 ID=mRNA_L-elsbetiae_contig7423.16305.1|Name=mRNA_L-elsbetiae_contig7423.16305.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1576bp|location=Sequence derived from alignment at L-elsbetiae_contig7423:2344..3919- (Laminarionema elsbetiae ELsaHSoW15)
GACTGCCTGAGAGCACGATATAAGAGCACCACACGCCATGCACAGCAAGT
AGGCCGGTAAACGGCAACGGTCAGTCGGCAGTTGCAGCAGGTTTCCCTTG
AACGGCTTGAAACGCCGAGAAAGTCAACATGACCGTTGCGCGTACGCAGC
AACAACAGCAGCGTCGTGGGTACTGCTGGGTGCTCCGAGTCCTGCGTGTA
CCTCTGCTGTGTGTGGCCGCGGCATCATCGGAGCGAAGTTGCTTGTTAAC
GAAGAAGGCTTTCGTGGCGCCACCATCAAGCGGTGTTGGTTTGTTGGTGC
CTAGCGACCTCGGCGGCGGCTTGCTGGCGAAAAGCTCCACACGACGGCCT
TGTACTCGAAAGGTACGACAGAGGAGGGAGGTAGAGTAGTCTGTGCTCAT
TGATGACACTACGTAGCAGTTTGAAGAACGATTGTTGTAGTAGCGGGCAG
CTGTTGTTGGTTGAGGTTAAGGTTGTGTGACATGTTTTTTTTTCTGCACT
CTGGTGCCAGATACATAAGCAGTACGTAAAGGCAGCATGGAAGAGTTTGC
GGGATAAAGTCATGAATTGGAATGAATGTCTGACAACTTTGCTTTTCTCC
CAGTATTCACAATTGGTGCATGTACTTATGTTGATACTCTCCACACCTGA
TATTCACCTGATATTCAAGAACCGCACATCAGCATGGTTACAATGAGATA
ATGAGCTGGAGCGGCCGTGGGATAGTGCACCGTACACGGAACAGCAGTTA
TCTTGGCACACGCTGTAGTATGTTTGGCAGGACGAGGCCTTTCGGAGTAA
GCCCGCTTGGTGGTGTACGTACGCTTGGTGAAGAGTCCTGTGGGTGCATC
TCCAACACCTCTTCTCCGCAGGTTTGCTGTGAGAATCGGACGTAACCGGG
GAACGTGGGCTCCTCCACACTTGGCCGCGGCGTTTATATTCCAATGGGCT
AGATAGTCAAGTGCCTCCGTGACCCGACCCCTTGCTGCCTCCATGGCCCG
TCACCCTCGAGGCAAAAAATCCAGATGCCAGCAAAGCTTCCTTCACGATG
GGCATCGGTTGTGAACGAACAACCGTTGACGTACGGCAGTGCTAGCAGTG
GCCGAACCGGGCATCGGTGTTATTATGGCCCACCCGCATGGCTGTGGACG
GAGCACGGCCGGACGCAACGTCCACATTTCACACTCCCGTTTTTTCGTTT
TTTTTCGCCGGTATCTCAAAGTGTGTTGGTTGGAGTACATGGCAAAACAC
AGACGTACAAGCATATGTACCACGGCATCATTTGCGCGTGTCCCCCACAT
CTCTCGCCGCCACCGCCGCCGCCGCCGCCGCCGTGCCACACGATTTCTTG
CTGCCAAATGCCTTGTTTATCTAAGTTGTTGCCGCCGCTTCTCGGCCCGG
ACGGCTCACACGACTCGCTTGGGCGGCCTCCACCAAACCCCGCCGAGAAG
GGCGGCAGCGGCAGCGGCAGCGGTGGCAGGCCCGGCCGCAGCCGCGCGCC
GTGCCGAGGGGTGGCCGGCCCGGCGCCTTGGACTCGAAAAGCGTCGATGT
TGGCGGCAGCCGCTCCGCACGTAGGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7423:2344..3919-

>mRNA_L-elsbetiae_contig7423.16305.1 ID=mRNA_L-elsbetiae_contig7423.16305.1|Name=mRNA_L-elsbetiae_contig7423.16305.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=870bp|location=Sequence derived from alignment at L-elsbetiae_contig7423:2344..3919- (Laminarionema elsbetiae ELsaHSoW15)
ATGACCGTTGCGCGTACGCAGCAACAACAGCAGCGTCGTGGGTACTGCTG
GGTGCTCCGAGTCCTGCGTGTACCTCTGCTGTGTGTGGCCGCGGCATCAT
CGGAGCGAAGTTGCTTGTTAACGAAGAAGGCTTTCGTGGCGCCACCATCA
AGCGGTGTTGGTTTGTTGGTGCCTAGCGACCTCGGCGGCGGCTTGCTGGC
GAAAAGCTCCACACGACGGCCTTGTACTCGAAAGATGACCGTTGCGCGTA
CGCAGCAACAACAGCAGCGTCGTGGGTACTGCTGGGTGCTCCGAGTCCTG
CGTGTACCTCTGCTGTGTGTGGCCGCGGCATCATCGGAGCGAAGTTGCTT
GTTAACGAAGAAGGCTTTCGTGGCGCCACCATCAAGCGGTGTTGGTTTGT
TGGTGCCTAGCGACCTCGGCGGCGGCTTGCTGGCGAAAAGCTCCACACGA
CGGCCTTGTACTCGAAAGTTGTTGCCGCCGCTTCTCGGCCCGGACGGCTC
ACACGACTCGCTTGGGCGGCCTCCACCAAACCCCGCCGAGAAGGGCGGCA
GCGGCAGCGGCAGCGGTGGCAGGCCCGGCCGCAGCCGCGCGCCGTGCCGA
GGGGTGGCCGGCCCGGCGCCTTGGACTCGAAAAGCGTCGATGTTGGCGGC
AGCCGCTCCGCACGTAGGGTTGTTGCCGCCGCTTCTCGGCCCGGACGGCT
CACACGACTCGCTTGGGCGGCCTCCACCAAACCCCGCCGAGAAGGGCGGC
AGCGGCAGCGGCAGCGGTGGCAGGCCCGGCCGCAGCCGCGCGCCGTGCCG
AGGGGTGGCCGGCCCGGCGCCTTGGACTCGAAAAGCGTCGATGTTGGCGG
CAGCCGCTCCGCACGTAGGG
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