mRNA_L-elsbetiae_contig7421.16304.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7421.16304.1
Unique NamemRNA_L-elsbetiae_contig7421.16304.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7421.16304.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7421contigL-elsbetiae_contig7421:4462..6119 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons2
Model size185
Cds size183
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816826.827295-CDS-L-elsbetiae_contig7421:4461..45061622816826.827295-CDS-L-elsbetiae_contig7421:4461..4506Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7421 4462..4506 +
1691683843.373153-CDS-L-elsbetiae_contig7421:4461..45061691683843.373153-CDS-L-elsbetiae_contig7421:4461..4506Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7421 4462..4506 +
1622816826.8391173-CDS-L-elsbetiae_contig7421:5979..61171622816826.8391173-CDS-L-elsbetiae_contig7421:5979..6117Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7421 5980..6117 +
1691683843.3925805-CDS-L-elsbetiae_contig7421:5979..61171691683843.3925805-CDS-L-elsbetiae_contig7421:5979..6117Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7421 5980..6117 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7421.16304.1prot_L-elsbetiae_contig7421.16304.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7421 4462..6117 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7421.16304.1

>prot_L-elsbetiae_contig7421.16304.1 ID=prot_L-elsbetiae_contig7421.16304.1|Name=mRNA_L-elsbetiae_contig7421.16304.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=61bp
DVSLLHADLAATEQSVENKATQEPSRASSGLGWNTFVLVGVFAIAFAGFA
IAFAGFIYSWP
back to top

mRNA from alignment at L-elsbetiae_contig7421:4462..6119+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7421.16304.1 ID=mRNA_L-elsbetiae_contig7421.16304.1|Name=mRNA_L-elsbetiae_contig7421.16304.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1658bp|location=Sequence derived from alignment at L-elsbetiae_contig7421:4462..6119+ (Laminarionema elsbetiae ELsaHSoW15)
GACGTTTCTCTACTCCACGCAGATCTCGCTGCGACAGAGCAGTCGGTAAG
GTGGTTAGTTTGGCTAAGTTCGCTTGCAGATGCCATGTCATTTTGTAGCG
TGTGACGATGAGCAAATGTACGGCACATGTCGCTGTAGGTTCGATTATAC
TGGAGTACAAGGTTTGGCCGCTGACGCGGCCCCGCTTTATAGAAAGCGAA
TCCAAGGTAATGATACATCTACTTCCTGTGAAGTGCTGCTGTTGTCGAAA
CGTTATACAACAGAGGGTAGGTGTAGCGATACATAGAAACACAAGACGGC
AGTTTGTTTTTGAACGTGGACTATCTAATGACTCTAGAGTTTAGAGAGCT
TTCCCGAAAATAACCCGGGTCAGCAGGAGGCTTAAATTCCTACTTCCACC
AGCTACCGAATTAGAGAGCACACAAAGCAGTGCAAGCAGAATTGTCCTCC
TTGTATTTGATGGCGCTGCCGTGAGTGTACCCGTGTGCACCACAATACTA
TGTGCAGCGCCTCGCAAGGTACATGTTCGGCTCGCGCTTTGGCCCCTTCG
GCTCCTCACCATTCGGCGAGTAAACGCGGATTTCAAGCGGGAGTCAAATT
TCCAAAACAATCCATGTAGAGCAGCTAAGTGTGAAAGACAAACAGAGACA
GCGACGGAAATAAACAAATGAAGCTGTGCAGACAGCGGGGAAGCAAGCGA
GAATGAGAAGGATTGAATTGCACTGTGTAAAGGGTGTGTAACCACCGAGT
AGTTGCTGATGGGAACAGCGAGAGCATCTTCAGAATAGTTTCGAAATGGA
GCCTTCTTGTGCATGTCATCGCGGGGTTACGGGGGAAAATGATATATCAC
ATCGAGAGGACAATGGGACGCGCGAGGCAAGCAGAAAGATAACACCACAT
CGATAAATGCAAATAGAGAGAAAGAGAGAGAGAGAGAGAGAGAGAGATAA
GTGCTTCATACTCCGCTACCTACTGATTGTAGATACTTGTGGACAGAGGA
TGGCGCGGATACCAACGCCGATTCGCGGCGGGCAAGTTTTAGATTCAATT
CGGATCTATTCCCACCACGGGGTAAAATGGCAACAGGTGTCCGCATCCAG
AGCGACGGACAAATGGAATGCGTGAGACAAACAGAAACACAGAGAGAGAG
AGTGAGTGAGAGGTAGGAAGTGGAGGAGACGAGAACGAGAAGGCTGGACG
AGCACGTGCAATGAAGGGTTAAAGCCAAACGGGGAGGTGCTGATGGGAGT
CGACACACACAGGTCCCGGAGTGCAGAAGACCGCGGCAGAGATAATTCTC
AGAAAATATGCAGGGCTCGAAATGGCGAGCTGTCAGGCACGGCATGTCTT
ACCTGTCAGCAAATTGTTAAATCGTAGTCGATTTATTGATATGTATCCAA
CTTCGAAGGTTCTCTTTTCCTATAAGATATACGACCTCGTTTCCTGTAGG
AAGGAGGCTGCCATAGAACCGCATCGATAACACAACGTTAGCCTGTAACG
CGTGCGTTTCGAGCCCAGGTGGAGAACAAGGCTACCCAAGAACCCAGTAG
GGCATCGTCGGGTCTTGGATGGAATACCTTCGTGCTTGTTGGTGTGTTCG
CCATCGCCTTCGCCGGTTTCGCCATCGCCTTCGCCGGTTTTATCTACTCT
TGGCCGGT
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig7421:4462..6119+

>mRNA_L-elsbetiae_contig7421.16304.1 ID=mRNA_L-elsbetiae_contig7421.16304.1|Name=mRNA_L-elsbetiae_contig7421.16304.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=366bp|location=Sequence derived from alignment at L-elsbetiae_contig7421:4462..6119+ (Laminarionema elsbetiae ELsaHSoW15)
GACGTTTCTCTACTCCACGCAGATCTCGCTGCGACAGAGCAGTCGGACGT
TTCTCTACTCCACGCAGATCTCGCTGCGACAGAGCAGTCGGTGGAGAACA
AGGCTACCCAAGAACCCAGTAGGGCATCGTCGGGTCTTGGATGGAATACC
TTCGTGCTTGTTGGTGTGTTCGCCATCGCCTTCGCCGGTTTCGCCATCGC
CTTCGCCGGTTTTATCTACTCTTGGCCGGTGGAGAACAAGGCTACCCAAG
AACCCAGTAGGGCATCGTCGGGTCTTGGATGGAATACCTTCGTGCTTGTT
GGTGTGTTCGCCATCGCCTTCGCCGGTTTCGCCATCGCCTTCGCCGGTTT
TATCTACTCTTGGCCG
back to top