mRNA_L-elsbetiae_contig7421.16303.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7421.16303.1
Unique NamemRNA_L-elsbetiae_contig7421.16303.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7421.16303.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7421contigL-elsbetiae_contig7421:3976..4458 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size206
Cds size204
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816826.7832954-CDS-L-elsbetiae_contig7421:3975..41491622816826.7832954-CDS-L-elsbetiae_contig7421:3975..4149Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7421 3976..4149 +
1691683843.3400524-CDS-L-elsbetiae_contig7421:3975..41491691683843.3400524-CDS-L-elsbetiae_contig7421:3975..4149Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7421 3976..4149 +
1622816826.7967892-CDS-L-elsbetiae_contig7421:4428..44581622816826.7967892-CDS-L-elsbetiae_contig7421:4428..4458Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7421 4429..4458 +
1691683843.352316-CDS-L-elsbetiae_contig7421:4428..44581691683843.352316-CDS-L-elsbetiae_contig7421:4428..4458Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7421 4429..4458 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7421.16303.1prot_L-elsbetiae_contig7421.16303.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7421 3976..4458 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7421.16303.1

>prot_L-elsbetiae_contig7421.16303.1 ID=prot_L-elsbetiae_contig7421.16303.1|Name=mRNA_L-elsbetiae_contig7421.16303.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=68bp
ASPASDEVIEHLFSEDRPGQDDYDYCALRFFVELAEYRGNKSGWIRSGTL
ALKRHIAEVNAEVAGKAS
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mRNA from alignment at L-elsbetiae_contig7421:3976..4458+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7421.16303.1 ID=mRNA_L-elsbetiae_contig7421.16303.1|Name=mRNA_L-elsbetiae_contig7421.16303.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=483bp|location=Sequence derived from alignment at L-elsbetiae_contig7421:3976..4458+ (Laminarionema elsbetiae ELsaHSoW15)
GCGTCCCCAGCTTCCGACGAGGTCATTGAGCATCTATTCTCTGAAGACCG
GCCTGGACAGGATGACTACGACTATTGTGCTCTTCGCTTCTTTGTGGAAC
TTGCCGAATATCGGGGCAACAAGAGCGGGTGGATCCGTTCCGGCACGCTT
GCTTTGAAGCGGCACATCGCAGAGGTAAATTTCAGGCCCCTCTATCGTAC
ATAGGTACATGTCGCTGTTGTCGGCTTACTGTACGTACGTTTGAAGTACA
GTAGTGGTATTTTACAAGGCCCGGTAAATATTTACCACGCTGCTGTGTTG
TTGTTATTGCTGCTGTTGGATGTTGCTGTTGCTGTGCGAACATGTCTCAC
GCCTCCCTAAATGTGTTGGATACGTCCTGAATACCTTTCTTCCCCCCGCC
CTCCCTCCAAACCATCTACTTACTACCCCCAATGTTTCACCCACACCGGC
AAGGTTAACGCCGAGGTGGCTGGCAAAGCGAGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7421:3976..4458+

>mRNA_L-elsbetiae_contig7421.16303.1 ID=mRNA_L-elsbetiae_contig7421.16303.1|Name=mRNA_L-elsbetiae_contig7421.16303.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=408bp|location=Sequence derived from alignment at L-elsbetiae_contig7421:3976..4458+ (Laminarionema elsbetiae ELsaHSoW15)
GCGTCCCCAGCTTCCGACGAGGTCATTGAGCATCTATTCTCTGAAGACCG
GCCTGGACAGGATGACTACGACTATTGTGCTCTTCGCTTCTTTGTGGAAC
TTGCCGAATATCGGGGCAACAAGAGCGGGTGGATCCGTTCCGGCACGCTT
GCTTTGAAGCGGCACATCGCAGAGGCGTCCCCAGCTTCCGACGAGGTCAT
TGAGCATCTATTCTCTGAAGACCGGCCTGGACAGGATGACTACGACTATT
GTGCTCTTCGCTTCTTTGTGGAACTTGCCGAATATCGGGGCAACAAGAGC
GGGTGGATCCGTTCCGGCACGCTTGCTTTGAAGCGGCACATCGCAGAGGT
TAACGCCGAGGTGGCTGGCAAAGCGAGCGTTAACGCCGAGGTGGCTGGCA
AAGCGAGC
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