mRNA_L-elsbetiae_contig7416.16298.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7416.16298.1
Unique NamemRNA_L-elsbetiae_contig7416.16298.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7416.16298.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7416contigL-elsbetiae_contig7416:8810..9128 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size320
Cds size312
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816826.5209663-CDS-L-elsbetiae_contig7416:8809..91211622816826.5209663-CDS-L-elsbetiae_contig7416:8809..9121Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7416 8810..9121 +
1691683843.1757517-CDS-L-elsbetiae_contig7416:8809..91211691683843.1757517-CDS-L-elsbetiae_contig7416:8809..9121Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7416 8810..9121 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816826.5351148-UTR-L-elsbetiae_contig7416:9121..91281622816826.5351148-UTR-L-elsbetiae_contig7416:9121..9128Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7416 9122..9128 +
1691683843.1872275-UTR-L-elsbetiae_contig7416:9121..91281691683843.1872275-UTR-L-elsbetiae_contig7416:9121..9128Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7416 9122..9128 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7416.16298.1prot_L-elsbetiae_contig7416.16298.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7416 8810..9121 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7416.16298.1

>prot_L-elsbetiae_contig7416.16298.1 ID=prot_L-elsbetiae_contig7416.16298.1|Name=mRNA_L-elsbetiae_contig7416.16298.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=104bp
RAIGYASSATPYALDHQLNLFATALLVLSPHAFCRLADRLHYLLLVCCHL
VRVVFHHLHVILHLLAKLGYGFLFEFGLVFGDHLGEFLNPVHENHAADLF
FGR*
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mRNA from alignment at L-elsbetiae_contig7416:8810..9128+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7416.16298.1 ID=mRNA_L-elsbetiae_contig7416.16298.1|Name=mRNA_L-elsbetiae_contig7416.16298.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=319bp|location=Sequence derived from alignment at L-elsbetiae_contig7416:8810..9128+ (Laminarionema elsbetiae ELsaHSoW15)
CGCGCGATTGGCTATGCCTCCTCTGCTACACCGTACGCTCTAGACCACCA
GCTTAATCTTTTTGCCACAGCTTTGCTCGTGCTCAGTCCTCATGCTTTTT
GCCGTCTCGCTGACAGATTGCACTACCTTCTTCTCGTGTGCTGCCACCTC
GTGCGAGTCGTATTCCACCATCTCCATGTAATCTTGCATCTGCTGGCGAA
ACTTGGTTACGGGTTCCTGTTCGAGTTCGGCCTCGTGTTCGGAGATCATC
TCGGCGAGTTTCTTAACCCAGTTCATGAAAACCACGCGGCAGACCTCTTT
TTTGGGCGCTGAAATGAAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7416:8810..9128+

>mRNA_L-elsbetiae_contig7416.16298.1 ID=mRNA_L-elsbetiae_contig7416.16298.1|Name=mRNA_L-elsbetiae_contig7416.16298.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=624bp|location=Sequence derived from alignment at L-elsbetiae_contig7416:8810..9128+ (Laminarionema elsbetiae ELsaHSoW15)
CGCGCGATTGGCTATGCCTCCTCTGCTACACCGTACGCTCTAGACCACCA
GCTTAATCTTTTTGCCACAGCTTTGCTCGTGCTCAGTCCTCATGCTTTTT
GCCGTCTCGCTGACAGATTGCACTACCTTCTTCTCGTGTGCTGCCACCTC
GTGCGAGTCGTATTCCACCATCTCCATGTAATCTTGCATCTGCTGGCGAA
ACTTGGTTACGGGTTCCTGTTCGAGTTCGGCCTCGTGTTCGGAGATCATC
TCGGCGAGTTTCTTAACCCAGTTCATGAAAACCACGCGGCAGACCTCTTT
TTTGGGCGCTGACGCGCGATTGGCTATGCCTCCTCTGCTACACCGTACGC
TCTAGACCACCAGCTTAATCTTTTTGCCACAGCTTTGCTCGTGCTCAGTC
CTCATGCTTTTTGCCGTCTCGCTGACAGATTGCACTACCTTCTTCTCGTG
TGCTGCCACCTCGTGCGAGTCGTATTCCACCATCTCCATGTAATCTTGCA
TCTGCTGGCGAAACTTGGTTACGGGTTCCTGTTCGAGTTCGGCCTCGTGT
TCGGAGATCATCTCGGCGAGTTTCTTAACCCAGTTCATGAAAACCACGCG
GCAGACCTCTTTTTTGGGCGCTGA
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