mRNA_L-elsbetiae_contig7411.16296.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7411.16296.1
Unique NamemRNA_L-elsbetiae_contig7411.16296.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig7411.16296.1 vs. uniprot
Match: A0A6H5JYR3_9PHAE (WSC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYR3_9PHAE)

HSP 1 Score: 68.2 bits (165), Expect = 3.480e-10
Identity = 43/89 (48.31%), Postives = 50/89 (56.18%), Query Frame = 1 
Query:    1 KCRDNCS--GYQYFGLESGVKCFCSNE---SPP----GEPIENCG----FPDDEWVWEYRWLCSGESRVQCGTRLAISVYEITDETGDG 228
            KC   C+  G +YFGLES VKC C +E   SP     GE    CG    F  D  V EY++LCSG+SRV CGT   ISVY +   TG G
Sbjct:  132 KCAATCTAQGTRYFGLESAVKCLCGDELAGSPTDDVYGEGGSVCGIDITFGGD--VPEYKYLCSGDSRVLCGTDDHISVYSLDGSTGGG 218
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BLAST of mRNA_L-elsbetiae_contig7411.16296.1 vs. uniprot
Match: A0A6H5K6V8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6V8_9PHAE)

HSP 1 Score: 68.6 bits (166), Expect = 5.490e-10
Identity = 42/90 (46.67%), Postives = 50/90 (55.56%), Query Frame = 1 
Query:    1 KCRDNCS--GYQYFGLESGVKCFCSNESPPGEPIEN--------CG----FPDDEWVWEYRWLCSGESRVQCGTRLAISVYEITDETGDG 228
            KC   C+  G QYFGLES VKC C +E   G P ++        CG    F  D  V EY++LCSG+SRV CGT   ISVY +   TG G
Sbjct:  254 KCAATCTAQGTQYFGLESAVKCLCGDELV-GSPTDDVYGDGGSVCGIDITFGGD--VPEYKYLCSGDSRVLCGTDDHISVYSLDGSTGGG 340
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BLAST of mRNA_L-elsbetiae_contig7411.16296.1 vs. uniprot
Match: A0A6H5K384_9PHAE (WSC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K384_9PHAE)

HSP 1 Score: 68.6 bits (166), Expect = 5.800e-10
Identity = 42/90 (46.67%), Postives = 50/90 (55.56%), Query Frame = 1 
Query:    1 KCRDNCS--GYQYFGLESGVKCFCSNESPPGEPIEN--------CG----FPDDEWVWEYRWLCSGESRVQCGTRLAISVYEITDETGDG 228
            KC   C+  G QYFGLES VKC C +E   G P ++        CG    F  D  V EY++LCSG+SRV CGT   ISVY +   TG G
Sbjct:  194 KCAATCTAQGTQYFGLESAVKCLCGDELV-GSPTDDVYGDGGSVCGIDITFGGD--VPEYKYLCSGDSRVLCGTDDHISVYSLDGSTGGG 280
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BLAST of mRNA_L-elsbetiae_contig7411.16296.1 vs. uniprot
Match: A0A6H5K566_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K566_9PHAE)

HSP 1 Score: 68.6 bits (166), Expect = 6.380e-10
Identity = 42/90 (46.67%), Postives = 50/90 (55.56%), Query Frame = 1 
Query:    1 KCRDNCS--GYQYFGLESGVKCFCSNESPPGEPIEN--------CG----FPDDEWVWEYRWLCSGESRVQCGTRLAISVYEITDETGDG 228
            KC   C+  G QYFGLES VKC C +E   G P ++        CG    F  D  V EY++LCSG+SRV CGT   ISVY +   TG G
Sbjct:  254 KCAATCTAQGTQYFGLESAVKCLCGDELV-GSPTDDVYGDGGSVCGIDITFGGD--VPEYKYLCSGDSRVLCGTDDHISVYSLDGSTGGG 340
[Close]
BLAST of mRNA_L-elsbetiae_contig7411.16296.1 vs. uniprot
Match: D7FMV1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMV1_ECTSI)

HSP 1 Score: 66.2 bits (160), Expect = 3.920e-9
Identity = 36/80 (45.00%), Postives = 46/80 (57.50%), Query Frame = 1 
Query:    1 KCRDNCS--GYQYFGLESGVKCFCSNE---SP----PGEPIENCGFPDDEWVWEYRWLCSGESRVQCGTRLAISVYEITD 213
            KC   C+  G  YFGLES VKC C +E   SP     GE +    + DD  + EY++LCSGES V CGT   +SVY + +
Sbjct:  268 KCAAICTEQGTAYFGLESAVKCLCGDELDGSPYDDVRGESVCGVDYTDDVNIPEYKFLCSGESTVLCGTDTHMSVYSLNE 347
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7411.16296.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5JYR3_9PHAE3.480e-1048.31WSC domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5K6V8_9PHAE5.490e-1046.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K384_9PHAE5.800e-1046.67WSC domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5K566_9PHAE6.380e-1046.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FMV1_ECTSI3.920e-945.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7411contigL-elsbetiae_contig7411:8082..9851 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score62.4
Seed ortholog evalue2.2e-07
Seed eggNOG ortholog2880.D7FHN6
KEGG koko:K19720
KEGG Pathwayko04611,ko04926,ko04933,ko04974,ko05146,map04611,map04926,map04933,map04974,map05146
Hectar predicted targeting categoryother localisation
EggNOG free text desc.structural constituent of cuticle
EggNOG OGsKOG3544@1,KOG3544@2759
COG Functional cat.D
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00536
Exons5
Model size640
Cds size483
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7411.16296.1prot_L-elsbetiae_contig7411.16296.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7411 8237..9851 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816826.3751173-UTR-L-elsbetiae_contig7411:8081..82361622816826.3751173-UTR-L-elsbetiae_contig7411:8081..8236Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7411 8082..8236 -
1691683843.056235-UTR-L-elsbetiae_contig7411:8081..82361691683843.056235-UTR-L-elsbetiae_contig7411:8081..8236Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7411 8082..8236 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816826.386143-CDS-L-elsbetiae_contig7411:8236..82411622816826.386143-CDS-L-elsbetiae_contig7411:8236..8241Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7411 8237..8241 -
1691683843.0702486-CDS-L-elsbetiae_contig7411:8236..82411691683843.0702486-CDS-L-elsbetiae_contig7411:8236..8241Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7411 8237..8241 -
1622816826.3971462-CDS-L-elsbetiae_contig7411:8586..87991622816826.3971462-CDS-L-elsbetiae_contig7411:8586..8799Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7411 8587..8799 -
1691683843.0791984-CDS-L-elsbetiae_contig7411:8586..87991691683843.0791984-CDS-L-elsbetiae_contig7411:8586..8799Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7411 8587..8799 -
1622816826.4105692-CDS-L-elsbetiae_contig7411:9101..91461622816826.4105692-CDS-L-elsbetiae_contig7411:9101..9146Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7411 9102..9146 -
1691683843.0884266-CDS-L-elsbetiae_contig7411:9101..91461691683843.0884266-CDS-L-elsbetiae_contig7411:9101..9146Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7411 9102..9146 -
1622816826.4213512-CDS-L-elsbetiae_contig7411:9356..95191622816826.4213512-CDS-L-elsbetiae_contig7411:9356..9519Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7411 9357..9519 -
1691683843.1011508-CDS-L-elsbetiae_contig7411:9356..95191691683843.1011508-CDS-L-elsbetiae_contig7411:9356..9519Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7411 9357..9519 -
1622816826.432345-CDS-L-elsbetiae_contig7411:9794..98511622816826.432345-CDS-L-elsbetiae_contig7411:9794..9851Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7411 9795..9851 -
1691683843.1152496-CDS-L-elsbetiae_contig7411:9794..98511691683843.1152496-CDS-L-elsbetiae_contig7411:9794..9851Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7411 9795..9851 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7411.16296.1

>prot_L-elsbetiae_contig7411.16296.1 ID=prot_L-elsbetiae_contig7411.16296.1|Name=mRNA_L-elsbetiae_contig7411.16296.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=161bp
KCRDNCSGYQYFGLESGVKCFCSNESPPGEPIENCGFPDDEWVWEYRWLC
SGESRVQCGTRLAISVYEITDETGDGPLSVPAPSPEESGPSDETCPGDIP
GIPSGDGTACCDSACGKCGGFMCQLLPGGPGKCCIGGLKGILENADPCSS
TGAAPCRIDV*
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mRNA from alignment at L-elsbetiae_contig7411:8082..9851-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7411.16296.1 ID=mRNA_L-elsbetiae_contig7411.16296.1|Name=mRNA_L-elsbetiae_contig7411.16296.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1770bp|location=Sequence derived from alignment at L-elsbetiae_contig7411:8082..9851- (Laminarionema elsbetiae ELsaHSoW15)
AAATGCAGGGACAACTGCAGCGGGTACCAATACTTCGGGCTCGAATCTGG
GGTCAAGGTGCGCGCGTGCGAGTGACAGATAACGAGGCAAAACATTGTCA
TTTATCACCATCGTTTGTAGGTACCGTTCATCGAGAGTTCGACGCCGGGG
TAGAAGACATCGTCGCGTGCGTAAGTTGCCTCAAAAGCAACGGGTGGTCG
ACAACGGGAAAAAGAGAAAGCTCCTGTTTTTGTCAGCAGGCTGCGACACG
CCGCAAATAACACGACCAGGAACACCGATGTGTTCTACTGATGTATCTCC
CGCTCCTTTCGTTCGACGTGCGAAACAACCAGTGCTTCTGTTCAAATGAA
AGCCCCCCCGGTGAACCGATCGAGAACTGTGGCTTCCCAGACGACGAGTG
GGTCTGGGAGTACCGCTGGCTGTGCAGCGGTGAATCTCGGGTTCAGTGCG
GCACCAGGCTCGCCATCAGCGTCTACGAAATCACCGATGAAACTGGTAAG
ACGACACTGATACTGCGTGCGGTGCTTTCGTTCCCCGACTGAACATCAAC
GGGATCACCCCTACGCCGTAGCCACGTACCTATGTAACACATATTCGGCT
GCCATATCTGGGTTTTCGCCTACTGACCCATCTACTAGACATATCCCAAC
TACTGAATTAGCTGCCGTTGCTCCTGTGGACAATTTCCACGCCGCCCTCC
ATCAGGTGATGGCCCTCTATCAGTCCCTGCCCCCTCCCCGGAAGAATCAG
GTGGGTTCTTTGTTGGGGTGGACAAGCTTATCGATACTAACTCAACCAAT
CTCCAAGATGGTTGAGTTCAGCGTGAAATTCGCGTTGGTAGCCGCAGAAC
TTACCAGGGGATTTCGAGAGTCCGCGCTTTGGCTGCGCAATCAACGCTTG
CGTACCAACGAATGTATTGTTGATATGTCGCTGGTTCTGCGCTAGACTTA
GAACTCTGGTTTTGATGACTCCTCGTGCTTCCTTGCATCGCAGTAGTTGG
CACCAACTGCAGAATGGTAGGCTAAAAGGGCTATCGTCTGTTGCCTCTTC
AGGCCCTTCAGACGAGACGTGCCCGGGCGACATTCCCGGCATTCCGTCCG
GGGACGGCACCGCATGCTGCGACAGTGCTTGCGGGAAGTGTGGAGGGTTC
ATGTGCCAGTTACTGCCCGGGGGGCCGGGTAAATGCTGCATCGGCGGATT
GAAGGGCATCCTTGAAAACGCGGACCCTTGCTCCTCGACTGGGGCTGCTC
CGTGCAGAATTGATGGTAAGGAACGCATGGCCAGGCAATACAGCGTAGGG
TAATTCTTTTTGTGGGTGGTCCCGGACGCGTGTATTTGTTAGCCACTTAT
TATTTCCCGTACTTTCGCCGTGCACTCCGGTGTGACGCGGCAAGAAAGCA
GCCCAGAAATGGACGCCAGAATCGAAAAAGTACAAGCGAGACGATGCTGG
CCGGTTCTACGTTCTCCATGTATCTGTTCGCACGACGGATAGGTAATTTT
TCTCCATGTGAAGGCTTGTCTGGCTCAACGAACGACATGCCTCTGTGCTT
TTTCCGTACCTCTCGTATTCGCCGTTGAACCGGATCTATCTACGCCGGTG
GCTCTGACAGTGTGAATCACCGGTAAGAATGAAAAGAGTGACGGGGTGCG
CCAGGCGGAAGGCGGAAGGTGCCGGGACTGGACAACACGAAGAACTTGAC
CCTGCTCGCCGGCTGTCCTGAGCCCGAGTTATTCTTCTGTGGTGCTATGT
ACTACCAGGGTTATACAACG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7411:8082..9851-

>mRNA_L-elsbetiae_contig7411.16296.1 ID=mRNA_L-elsbetiae_contig7411.16296.1|Name=mRNA_L-elsbetiae_contig7411.16296.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=966bp|location=Sequence derived from alignment at L-elsbetiae_contig7411:8082..9851- (Laminarionema elsbetiae ELsaHSoW15)
AAATGCAGGGACAACTGCAGCGGGTACCAATACTTCGGGCTCGAATCTGG
GGTCAAGAAATGCAGGGACAACTGCAGCGGGTACCAATACTTCGGGCTCG
AATCTGGGGTCAAGTGCTTCTGTTCAAATGAAAGCCCCCCCGGTGAACCG
ATCGAGAACTGTGGCTTCCCAGACGACGAGTGGGTCTGGGAGTACCGCTG
GCTGTGCAGCGGTGAATCTCGGGTTCAGTGCGGCACCAGGCTCGCCATCA
GCGTCTACGAAATCACCGATGAAACTGTGCTTCTGTTCAAATGAAAGCCC
CCCCGGTGAACCGATCGAGAACTGTGGCTTCCCAGACGACGAGTGGGTCT
GGGAGTACCGCTGGCTGTGCAGCGGTGAATCTCGGGTTCAGTGCGGCACC
AGGCTCGCCATCAGCGTCTACGAAATCACCGATGAAACTGGTGATGGCCC
TCTATCAGTCCCTGCCCCCTCCCCGGAAGAATCAGGTGATGGCCCTCTAT
CAGTCCCTGCCCCCTCCCCGGAAGAATCAGGCCCTTCAGACGAGACGTGC
CCGGGCGACATTCCCGGCATTCCGTCCGGGGACGGCACCGCATGCTGCGA
CAGTGCTTGCGGGAAGTGTGGAGGGTTCATGTGCCAGTTACTGCCCGGGG
GGCCGGGTAAATGCTGCATCGGCGGATTGAAGGGCATCCTTGAAAACGCG
GACCCTTGCTCCTCGACTGGGGCTGCTCCGTGCAGAATTGATGGCCCTTC
AGACGAGACGTGCCCGGGCGACATTCCCGGCATTCCGTCCGGGGACGGCA
CCGCATGCTGCGACAGTGCTTGCGGGAAGTGTGGAGGGTTCATGTGCCAG
TTACTGCCCGGGGGGCCGGGTAAATGCTGCATCGGCGGATTGAAGGGCAT
CCTTGAAAACGCGGACCCTTGCTCCTCGACTGGGGCTGCTCCGTGCAGAA
TTGATGTGTGATGTGA
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