mRNA_L-elsbetiae_contig7411.16295.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7411.16295.1
Unique NamemRNA_L-elsbetiae_contig7411.16295.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7411.16295.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7411contigL-elsbetiae_contig7411:7338..8176 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size841
Cds size423
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816826.3317273-CDS-L-elsbetiae_contig7411:7337..77601622816826.3317273-CDS-L-elsbetiae_contig7411:7337..7760Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7411 7338..7760 +
1691683843.029703-CDS-L-elsbetiae_contig7411:7337..77601691683843.029703-CDS-L-elsbetiae_contig7411:7337..7760Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7411 7338..7760 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816826.3424737-UTR-L-elsbetiae_contig7411:7760..81761622816826.3424737-UTR-L-elsbetiae_contig7411:7760..8176Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7411 7761..8176 +
1691683843.0416167-UTR-L-elsbetiae_contig7411:7760..81761691683843.0416167-UTR-L-elsbetiae_contig7411:7760..8176Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7411 7761..8176 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7411.16295.1prot_L-elsbetiae_contig7411.16295.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7411 7338..7760 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7411.16295.1

>prot_L-elsbetiae_contig7411.16295.1 ID=prot_L-elsbetiae_contig7411.16295.1|Name=mRNA_L-elsbetiae_contig7411.16295.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=141bp
TVLAFECGCGGRGASLDPRLTCCWCSGCPHLIVPHHTQPHQSQDECHSKY
FITRLITPGPGIHLYHKALVRNGHTHAIHLSQNFEETRNILCLNLLHESS
YICIKSRKIPLNSAYRLTQASSTGVLAAAAPKLLDMSPPY*
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mRNA from alignment at L-elsbetiae_contig7411:7338..8176+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7411.16295.1 ID=mRNA_L-elsbetiae_contig7411.16295.1|Name=mRNA_L-elsbetiae_contig7411.16295.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=839bp|location=Sequence derived from alignment at L-elsbetiae_contig7411:7338..8176+ (Laminarionema elsbetiae ELsaHSoW15)
ACTGTGTTGGCTTTCGAGTGTGGCTGCGGGGGGAGGGGTGCTTCCCTTGA
CCCACGCCTTACATGCTGTTGGTGTTCAGGCTGCCCACACCTCATTGTGC
CACATCACACACAACCCCATCAGAGCCAAGACGAATGCCATTCCAAATAC
TTTATCACCCGCCTGATTACTCCAGGCCCCGGTATTCACTTGTATCACAA
GGCACTAGTACGCAATGGACACACACACGCCATTCACCTAAGCCAAAACT
TCGAAGAAACACGCAACATACTGTGTTTAAATCTGCTGCACGAAAGCAGC
TACATTTGTATCAAGAGCCGTAAAATTCCGCTGAACTCCGCATATCGACT
GACACAAGCATCTTCCACTGGTGTGCTCGCCGCCGCAGCCCCCAAACTCC
TCGATATGTCTCCTCCATATTGACCCGTTCGTCCTTAGATCACTCTAGTT
TAACGTGAGTCAACTTGCAGTCATAGAGGCCCCTGCGGCGATTCCGCTAC
ATCTTCAACATTTGACGCACATGACCCCGATCTGCTACTTCTCGTTCGTC
CTCTACTCTTTTCAAGTCGTTCTCTTTCCACTCGTTCTCTTTCGAAAGTA
ACAGTCGCGGTTTTTGCAGCCTCTCTCCGTTAGTCAGCGCTCCGTCCGAC
GACACATACCTACCTCCAGCACCTTCCCGAATGCCACAACATTTCTTCAC
ATCAAACCCCTTATGGCCCCGCCGCCCCGTCAAGGCAGGGGGGGCGTTGT
ATAACCCTGGTAGTACATAGCACCACAGAAGAATAACTCGGGCTCAGGAC
AGCCGGCGAGCAGGGTCAAGTTCTTCGTGTTGTCCAGTC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7411:7338..8176+

>mRNA_L-elsbetiae_contig7411.16295.1 ID=mRNA_L-elsbetiae_contig7411.16295.1|Name=mRNA_L-elsbetiae_contig7411.16295.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=846bp|location=Sequence derived from alignment at L-elsbetiae_contig7411:7338..8176+ (Laminarionema elsbetiae ELsaHSoW15)
ACTGTGTTGGCTTTCGAGTGTGGCTGCGGGGGGAGGGGTGCTTCCCTTGA
CCCACGCCTTACATGCTGTTGGTGTTCAGGCTGCCCACACCTCATTGTGC
CACATCACACACAACCCCATCAGAGCCAAGACGAATGCCATTCCAAATAC
TTTATCACCCGCCTGATTACTCCAGGCCCCGGTATTCACTTGTATCACAA
GGCACTAGTACGCAATGGACACACACACGCCATTCACCTAAGCCAAAACT
TCGAAGAAACACGCAACATACTGTGTTTAAATCTGCTGCACGAAAGCAGC
TACATTTGTATCAAGAGCCGTAAAATTCCGCTGAACTCCGCATATCGACT
GACACAAGCATCTTCCACTGGTGTGCTCGCCGCCGCAGCCCCCAAACTCC
TCGATATGTCTCCTCCATATTGAACTGTGTTGGCTTTCGAGTGTGGCTGC
GGGGGGAGGGGTGCTTCCCTTGACCCACGCCTTACATGCTGTTGGTGTTC
AGGCTGCCCACACCTCATTGTGCCACATCACACACAACCCCATCAGAGCC
AAGACGAATGCCATTCCAAATACTTTATCACCCGCCTGATTACTCCAGGC
CCCGGTATTCACTTGTATCACAAGGCACTAGTACGCAATGGACACACACA
CGCCATTCACCTAAGCCAAAACTTCGAAGAAACACGCAACATACTGTGTT
TAAATCTGCTGCACGAAAGCAGCTACATTTGTATCAAGAGCCGTAAAATT
CCGCTGAACTCCGCATATCGACTGACACAAGCATCTTCCACTGGTGTGCT
CGCCGCCGCAGCCCCCAAACTCCTCGATATGTCTCCTCCATATTGA
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