mRNA_L-elsbetiae_contig74.16281.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig74.16281.1
Unique NamemRNA_L-elsbetiae_contig74.16281.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig74.16281.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig74contigL-elsbetiae_contig74:23934..27352 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size2190
Cds size1683
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig74.16281.1prot_L-elsbetiae_contig74.16281.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig74 24034..26945 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816824.1880486-UTR-L-elsbetiae_contig74:23933..240331622816824.1880486-UTR-L-elsbetiae_contig74:23933..24033Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig74 23934..24033 -
1691683841.161458-UTR-L-elsbetiae_contig74:23933..240331691683841.161458-UTR-L-elsbetiae_contig74:23933..24033Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig74 23934..24033 -
1622816824.2207088-UTR-L-elsbetiae_contig74:26945..273521622816824.2207088-UTR-L-elsbetiae_contig74:26945..27352Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig74 26946..27352 -
1691683841.189804-UTR-L-elsbetiae_contig74:26945..273521691683841.189804-UTR-L-elsbetiae_contig74:26945..27352Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig74 26946..27352 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816824.1990273-CDS-L-elsbetiae_contig74:24033..240971622816824.1990273-CDS-L-elsbetiae_contig74:24033..24097Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig74 24034..24097 -
1691683841.1728776-CDS-L-elsbetiae_contig74:24033..240971691683841.1728776-CDS-L-elsbetiae_contig74:24033..24097Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig74 24034..24097 -
1622816824.2099297-CDS-L-elsbetiae_contig74:25326..269451622816824.2099297-CDS-L-elsbetiae_contig74:25326..26945Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig74 25327..26945 -
1691683841.1813302-CDS-L-elsbetiae_contig74:25326..269451691683841.1813302-CDS-L-elsbetiae_contig74:25326..26945Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig74 25327..26945 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig74.16281.1

>prot_L-elsbetiae_contig74.16281.1 ID=prot_L-elsbetiae_contig74.16281.1|Name=mRNA_L-elsbetiae_contig74.16281.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=561bp
MVNAISERCGHTSCHTQPTHGVEGSKMAEFWGQHKKKGTVSVIGKRCGHP
GCNKKYRTYDVEGSKSPKFCAGHAEEGIVDIKNKRCGHPGCNKRPNYGVE
GSKTAEFCAGHKNEGMVNVVNKRRCGHAGCNKYRIYGFEGSKTAEFCAKH
KQEGMVNVVAKGCSHPSCNKYPSYGVEGSKAREFCAEHKKEGMANVVNKS
CGHAGCNKWPSYGVEGIKTAEFCAKHKQEGMVYVIKKRCGHPGCSKYPSY
GVEGSKAREFCAEHKKESMANVVNKRCAHPSCNKYRGYGVEGSKTAEFCA
KHKQEGMVYVIKKRCCHPGCNKYPSYGVEGSKTAEFCAGHAKEGMVDVKS
KRCGHPSCDKHPSYGMEGSKTHEFCSEHRREGMVNVKRQRCSHPCCNKAP
TYGMQGGKTREFCAEHAKGGMVNRNSGRVFAGKSRDGGNVTGPGWSATSR
TKGDPQEGRKRQDRAPLRTQAGGSSASKHAKRARQISEEELPEATKTAVL
EAARERLFHQEGSSSGQYPAVVKMEEGAVLPALGTVEAVRRTTGGNKRRH
RAGAAAESSS*
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mRNA from alignment at L-elsbetiae_contig74:23934..27352-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig74.16281.1 ID=mRNA_L-elsbetiae_contig74.16281.1|Name=mRNA_L-elsbetiae_contig74.16281.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3419bp|location=Sequence derived from alignment at L-elsbetiae_contig74:23934..27352- (Laminarionema elsbetiae ELsaHSoW15)
CTTTTCCCTTTGGTTTTCACAAACCAGCGAGAGCAGATAGATAGATTACT
TCCACACTCTACAGTGTTTGGCTGTGTTGCACGATAACGCCCAGATAGGA
GTGTATTTATTCACCGAGAGTGCAGTAAGCTGCCGTTTTTCGTCAAGGCG
AGGTGTTGGTGGACGCAGAAAGGAGGGCAAGGCGAACGCCGTGAGCAAGA
GGTGCGGCCATCCTGGTTGAAGCAAGCGCCCGACGTACGGCGTGGAAGGC
AGCAAGAAGACGGCAGAGTTCTGCGTTGAACACAAGAAGGAGAGAGCATG
ATGAAGAGGTGCGGCCACACAATTTAGTTGCAACAAGCTGCCGGGGTACG
GTGTGGAAGGTAGCAAGACGGCGGAGCTCTGCGCTGGACGTCCCGAGGAG
GACATACATGGTGAATGCCATTAGCGAGAGGTGCGGCCACACTAGTTGCC
ACACGCAGCCGACACACGGTGTGGAGGGTAGCAAGATGGCGGAGTTCTGG
GGTCAGCACAAGAAGAAGGGCACGGTGAGCGTCATTGGCAAGAGGTGCGG
CCACCCTGGTTGCAACAAAAAGTATCGGACCTACGACGTGGAAGGCAGCA
AGTCGCCCAAGTTCTGCGCTGGGCATGCGGAGGAGGGCATCGTGGACATC
AAGAACAAGAGGTGCGGTCACCCTGGTTGCAACAAGCGGCCAAACTATGG
CGTGGAAGGTAGCAAGACGGCGGAATTCTGCGCTGGACACAAGAATGAGG
GAATGGTGAACGTCGTCAACAAGAGAAGATGTGGCCACGCTGGTTGCAAC
AAGTATCGGATTTACGGCTTCGAAGGAAGCAAGACGGCGGAGTTCTGCGC
TAAACACAAGCAAGAGGGCATGGTGAACGTCGTCGCCAAGGGGTGCAGCC
ACCCTAGTTGCAACAAGTATCCATCATACGGCGTGGAAGGCAGCAAGGCG
AGGGAGTTCTGCGCTGAGCACAAGAAGGAGGGTATGGCGAACGTCGTCAA
CAAGAGTTGTGGCCACGCTGGTTGCAACAAGTGGCCCTCATACGGTGTGG
AAGGTATCAAGACGGCGGAGTTCTGCGCTAAACACAAGCAAGAGGGCATG
GTTTACGTCATCAAGAAGAGGTGCGGCCACCCTGGTTGCAGCAAGTATCC
GTCATACGGCGTGGAAGGCAGCAAGGCGAGGGAGTTCTGCGCTGAGCACA
AGAAGGAGAGTATGGCGAACGTCGTCAACAAGAGGTGCGCTCACCCTAGT
TGCAACAAGTATCGGGGTTACGGCGTCGAAGGAAGCAAGACGGCGGAGTT
CTGCGCTAAACACAAGCAAGAGGGCATGGTGTACGTCATCAAGAAGAGGT
GCTGCCACCCTGGTTGCAACAAGTATCCGTCATACGGCGTGGAAGGCAGC
AAGACGGCGGAGTTTTGCGCTGGGCATGCGAAAGAGGGCATGGTAGACGT
CAAGAGCAAGAGGTGCGGCCACCCTAGTTGCGACAAGCACCCGTCGTACG
GCATGGAAGGAAGCAAGACGCACGAGTTCTGCTCTGAACACAGGCGAGAG
GGCATGGTGAACGTTAAGAGGCAGAGGTGTAGCCACCCTTGCTGCAACAA
GGCCCCGACGTACGGCATGCAAGGCGGCAAGACGAGGGAGTTCTGCGCTG
AACATGCAAAGGGCGGAATGGTGAACCGAAACTCGGGCCGGGTGTTTGCT
GGAAAGAGCAGAGACGGCGGCAACGTTACTGGACCAGGATGGTCAGCCAC
AAGCCGCACCAAAGGTGACCCTCAAGAGGGCAGAAAACGTCAGGATCGCG
CACCTCTGCGGACGCAAGCGGGGGGCTCCTCGGCCAGCAAGCACGCCAAG
CGAGCCAGGCAGATCTCCGAAGAAGAGCTGCCTGAGGCAACGAAAACTGC
AGTCCTTGAAGCGGCACGCGAAAGGCTATTTCATCAGGAAGGCTCGTCCT
CGGGGCAATACCCTGCTGTGGTGAAGATGGAAGAAGGCGCGGTGCTGCCG
GCCTTGGGAACCGTGGAAGCTGTGAGGTAAGCCGAAAATATCATTTGTAG
CCTTGGTACCTTCATTACGGTTGTTGGTCGGCCGCCTACCACAGCAAACA
GTGCACCCCTGTGAGCTACTCTCGACAGCATAGATCAAGATGAAGCAGAT
TCAGTGACCTGCCTCACTGTAGTGCGGCCATGCATGATACACTTTCCATG
AACGCCTTTTTATTAGCCCTCCGAAATATATCGGTTTGCGATCTCCCAAA
CTTTGAGATAGCCCGGGGAGCATTTTTTTTTGTCTTTTTGTCTTCGCCCC
TCCTCCTTTTGATAAAGCCCCGAGGCTTTGGTTTATAATAGTTTTTCTAC
TTTTCATGCCAGCGGTCTATGTCCAGCGTGTGAAAAAGTGGTTCCAGGGG
GACTCGCTTGGTAAACACACTATACCTCTCTCATCGTCCCGGACTAGAGT
AGTGGTGCAAAATCCGCAATCCGTGAGATCGTGTCTCCTATTTTTGTTTG
TTATTTTGGAGGAGATGTTAAGTCACGTAAGGCGTAAGTATCTTTCATAT
ATGTAAAATTGCGTGATCCTTGGGTAGGAGAGGCAGGTAAGTTTTTGGAC
TGTTTTCGTTGGCGCCTCGTAGGCGCCCCACGGCGCGCTCATGCGCATCG
AGGTTTTTTGTCGCCTCAGAGGATGCCTCCCCCCGGCCTGGCACGAAACA
AGCTTCCCCAAGCGCTCTTTCTTTTTGCTTCTTGGAGTAAAATGTTCACA
AAGACCCAAGCTAAGAGCTTGGGGGAAAAAACTTCGTAGACACCGGTGAG
GCCAGTTCACTGACTCTTGCGTATTGAGATGTGAGAAAAATACAATGCCC
CCCCAAGAACTTTTCGCCCCGGGGATTTTTTTGTTCTTGAAAAAGATGAC
CCGTGTACCTTTGAGAACGCCCCAAGGCAACTGTTTTATCAAAATCTGTT
TTCGCCCCCCGGGGCGAAATTCGAAGGGGTTCACGGTAGTTGCCGGTGTA
GCACATGAGTAATCTCGCCGTTGCTTTGTGGCCCCAGCAAACGCAGGTTT
TGCCAAGAAGATGTGCATACCTCAACCTCTCGGTATGAATATGTTGCATA
ACGGCCACGGTTGTACCACCGTGCACTTCCCTCGCTCTCCCAACTCTATG
TACTGCCAATCCAACCAACGCCTTGTCCTCTGCTCGAACTGCAGCCATTC
TACCCGCTTACTTTGAAGGCTTTTTCCTGTCTTGCTTTTTGCGTGTTAAA
TCCAGGCGAACCACAGGCGGGAACAAGAGGAGGCACCGTGCCGGAGCAGC
AGCGGAAAGCTCTTCGTAGCAATTACAGTTTTGGCTTTTTGATTCAGCTA
GAGGGAGTATCGCAGAGCGTGAGCTTTATGCACACGCTGAATGAGAAGGA
TCATGGGCAAAAGTACATT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig74:23934..27352-

>mRNA_L-elsbetiae_contig74.16281.1 ID=mRNA_L-elsbetiae_contig74.16281.1|Name=mRNA_L-elsbetiae_contig74.16281.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=3366bp|location=Sequence derived from alignment at L-elsbetiae_contig74:23934..27352- (Laminarionema elsbetiae ELsaHSoW15)
ATGGTGAATGCCATTAGCGAGAGGTGCGGCCACACTAGTTGCCACACGCA
GCCGACACACGGTGTGGAGGGTAGCAAGATGGCGGAGTTCTGGGGTCAGC
ACAAGAAGAAGGGCACGGTGAGCGTCATTGGCAAGAGGTGCGGCCACCCT
GGTTGCAACAAAAAGTATCGGACCTACGACGTGGAAGGCAGCAAGTCGCC
CAAGTTCTGCGCTGGGCATGCGGAGGAGGGCATCGTGGACATCAAGAACA
AGAGGTGCGGTCACCCTGGTTGCAACAAGCGGCCAAACTATGGCGTGGAA
GGTAGCAAGACGGCGGAATTCTGCGCTGGACACAAGAATGAGGGAATGGT
GAACGTCGTCAACAAGAGAAGATGTGGCCACGCTGGTTGCAACAAGTATC
GGATTTACGGCTTCGAAGGAAGCAAGACGGCGGAGTTCTGCGCTAAACAC
AAGCAAGAGGGCATGGTGAACGTCGTCGCCAAGGGGTGCAGCCACCCTAG
TTGCAACAAGTATCCATCATACGGCGTGGAAGGCAGCAAGGCGAGGGAGT
TCTGCGCTGAGCACAAGAAGGAGGGTATGGCGAACGTCGTCAACAAGAGT
TGTGGCCACGCTGGTTGCAACAAGTGGCCCTCATACGGTGTGGAAGGTAT
CAAGACGGCGGAGTTCTGCGCTAAACACAAGCAAGAGGGCATGGTTTACG
TCATCAAGAAGAGGTGCGGCCACCCTGGTTGCAGCAAGTATCCGTCATAC
GGCGTGGAAGGCAGCAAGGCGAGGGAGTTCTGCGCTGAGCACAAGAAGGA
GAGTATGGCGAACGTCGTCAACAAGAGGTGCGCTCACCCTAGTTGCAACA
AGTATCGGGGTTACGGCGTCGAAGGAAGCAAGACGGCGGAGTTCTGCGCT
AAACACAAGCAAGAGGGCATGGTGTACGTCATCAAGAAGAGGTGCTGCCA
CCCTGGTTGCAACAAGTATCCGTCATACGGCGTGGAAGGCAGCAAGACGG
CGGAGTTTTGCGCTGGGCATGCGAAAGAGGGCATGGTAGACGTCAAGAGC
AAGAGGTGCGGCCACCCTAGTTGCGACAAGCACCCGTCGTACGGCATGGA
AGGAAGCAAGACGCACGAGTTCTGCTCTGAACACAGGCGAGAGGGCATGG
TGAACGTTAAGAGGCAGAGGTGTAGCCACCCTTGCTGCAACAAGGCCCCG
ACGTACGGCATGCAAGGCGGCAAGACGAGGGAGTTCTGCGCTGAACATGC
AAAGGGCGGAATGGTGAACCGAAACTCGGGCCGGGTGTTTGCTGGAAAGA
GCAGAGACGGCGGCAACGTTACTGGACCAGGATGGTCAGCCACAAGCCGC
ACCAAAGGTGACCCTCAAGAGGGCAGAAAACGTCAGGATCGCGCACCTCT
GCGGACGCAAGCGGGGGGCTCCTCGGCCAGCAAGCACGCCAAGCGAGCCA
GGCAGATCTCCGAAGAAGAGCTGCCTGAGGCAACGAAAACTGCAGTCCTT
GAAGCGGCACGCGAAAGGCTATTTCATCAGGAAGGCTCGTCCTCGGGGCA
ATACCCTGCTGTGGTGAAGATGGAAGAAGGCGCGGTGCTGCCGGCCTTGG
GAACCGTGGAAGCTGTGAGATGGTGAATGCCATTAGCGAGAGGTGCGGCC
ACACTAGTTGCCACACGCAGCCGACACACGGTGTGGAGGGTAGCAAGATG
GCGGAGTTCTGGGGTCAGCACAAGAAGAAGGGCACGGTGAGCGTCATTGG
CAAGAGGTGCGGCCACCCTGGTTGCAACAAAAAGTATCGGACCTACGACG
TGGAAGGCAGCAAGTCGCCCAAGTTCTGCGCTGGGCATGCGGAGGAGGGC
ATCGTGGACATCAAGAACAAGAGGTGCGGTCACCCTGGTTGCAACAAGCG
GCCAAACTATGGCGTGGAAGGTAGCAAGACGGCGGAATTCTGCGCTGGAC
ACAAGAATGAGGGAATGGTGAACGTCGTCAACAAGAGAAGATGTGGCCAC
GCTGGTTGCAACAAGTATCGGATTTACGGCTTCGAAGGAAGCAAGACGGC
GGAGTTCTGCGCTAAACACAAGCAAGAGGGCATGGTGAACGTCGTCGCCA
AGGGGTGCAGCCACCCTAGTTGCAACAAGTATCCATCATACGGCGTGGAA
GGCAGCAAGGCGAGGGAGTTCTGCGCTGAGCACAAGAAGGAGGGTATGGC
GAACGTCGTCAACAAGAGTTGTGGCCACGCTGGTTGCAACAAGTGGCCCT
CATACGGTGTGGAAGGTATCAAGACGGCGGAGTTCTGCGCTAAACACAAG
CAAGAGGGCATGGTTTACGTCATCAAGAAGAGGTGCGGCCACCCTGGTTG
CAGCAAGTATCCGTCATACGGCGTGGAAGGCAGCAAGGCGAGGGAGTTCT
GCGCTGAGCACAAGAAGGAGAGTATGGCGAACGTCGTCAACAAGAGGTGC
GCTCACCCTAGTTGCAACAAGTATCGGGGTTACGGCGTCGAAGGAAGCAA
GACGGCGGAGTTCTGCGCTAAACACAAGCAAGAGGGCATGGTGTACGTCA
TCAAGAAGAGGTGCTGCCACCCTGGTTGCAACAAGTATCCGTCATACGGC
GTGGAAGGCAGCAAGACGGCGGAGTTTTGCGCTGGGCATGCGAAAGAGGG
CATGGTAGACGTCAAGAGCAAGAGGTGCGGCCACCCTAGTTGCGACAAGC
ACCCGTCGTACGGCATGGAAGGAAGCAAGACGCACGAGTTCTGCTCTGAA
CACAGGCGAGAGGGCATGGTGAACGTTAAGAGGCAGAGGTGTAGCCACCC
TTGCTGCAACAAGGCCCCGACGTACGGCATGCAAGGCGGCAAGACGAGGG
AGTTCTGCGCTGAACATGCAAAGGGCGGAATGGTGAACCGAAACTCGGGC
CGGGTGTTTGCTGGAAAGAGCAGAGACGGCGGCAACGTTACTGGACCAGG
ATGGTCAGCCACAAGCCGCACCAAAGGTGACCCTCAAGAGGGCAGAAAAC
GTCAGGATCGCGCACCTCTGCGGACGCAAGCGGGGGGCTCCTCGGCCAGC
AAGCACGCCAAGCGAGCCAGGCAGATCTCCGAAGAAGAGCTGCCTGAGGC
AACGAAAACTGCAGTCCTTGAAGCGGCACGCGAAAGGCTATTTCATCAGG
AAGGCTCGTCCTCGGGGCAATACCCTGCTGTGGTGAAGATGGAAGAAGGC
GCGGTGCTGCCGGCCTTGGGAACCGTGGAAGCTGTGAGGCGAACCACAGG
CGGGAACAAGAGGAGGCACCGTGCCGGAGCAGCAGCGGAAAGCTCTTCGT
AGGCGAACCACAGGCGGGAACAAGAGGAGGCACCGTGCCGGAGCAGCAGC
GGAAAGCTCTTCGTAG
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