mRNA_L-elsbetiae_contig7399.16277.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7399.16277.1
Unique NamemRNA_L-elsbetiae_contig7399.16277.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig7399.16277.1 vs. uniprot
Match: A0A6H5JL95_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL95_9PHAE)

HSP 1 Score: 200 bits (509), Expect = 6.190e-62
Identity = 105/139 (75.54%), Postives = 118/139 (84.89%), Query Frame = 1
Query:    1 YNSLLESRPLATKAVTSGAIAFAGDLTCQMLAIQVATREEEQTPERTDENDHDRDHLLHGLGTSDVASEIDWGRTVRFTFVGATVLAPALHVWYGFLIRTLPGTAPATVVKRVALDQLLFAPVFLGVFLSTVMLLDGKA 417
            YNSLLESRPLATKAVTSGAIAFAGD++CQ+LA++VA REEE +  +   +DH++       G + VASEIDWGRT+RFTFVGA V+APALH WYGFLIR LPGTAPATVVKRVALDQLLFAPVFL VFLSTVMLLDG A
Sbjct:   73 YNSLLESRPLATKAVTSGAIAFAGDVSCQLLALEVAKREEEHSSAQH-VDDHEQHEPFGDGGATSVASEIDWGRTLRFTFVGAAVVAPALHAWYGFLIRRLPGTAPATVVKRVALDQLLFAPVFLAVFLSTVMLLDGNA 210          
BLAST of mRNA_L-elsbetiae_contig7399.16277.1 vs. uniprot
Match: D8LTH2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTH2_ECTSI)

HSP 1 Score: 193 bits (490), Expect = 5.450e-60
Identity = 106/141 (75.18%), Postives = 119/141 (84.40%), Query Frame = 1
Query:    1 YNSLLESRPLATKAVTSGAIAFAGDLTCQMLAIQVATREEEQTPER-TDENDHDRDHLLHGLGTS-DVASEIDWGRTVRFTFVGATVLAPALHVWYGFLIRTLPGTAPATVVKRVALDQLLFAPVFLGVFLSTVMLLDGKA 417
            YNSLLESRPLATKAVTSGAIAFAGD++CQ+LA++VA REEE++  +  DE +H   H   G G +  VASEIDWGRT+RFTFVGA V+APALH WYGFLI+ LPGTAPATVVKRVALDQLLFAP FL VFLSTVMLLDG A
Sbjct:    2 YNSLLESRPLATKAVTSGAIAFAGDVSCQLLALEVAKREEEKSSAQDVDELEH---HEPFGDGGARSVASEIDWGRTLRFTFVGAAVVAPALHAWYGFLIQRLPGTAPATVVKRVALDQLLFAPGFLAVFLSTVMLLDGNA 139          
BLAST of mRNA_L-elsbetiae_contig7399.16277.1 vs. uniprot
Match: L1JK07_GUITC (Uncharacterized protein n=2 Tax=Guillardia theta TaxID=55529 RepID=L1JK07_GUITC)

HSP 1 Score: 102 bits (255), Expect = 1.100e-24
Identity = 64/143 (44.76%), Postives = 84/143 (58.74%), Query Frame = 1
Query:    1 YNSLLESRPLA---TKAVTSGAIAFAGDLTCQMLAIQVATREEEQTPER-TDENDHDRDHLLHGLGTSDVASEIDWGRTVRFTFVGATVLAPALHVWYGFLIRTLPGTAPATVVKRVALDQLLFAPVFLGVFLSTVMLLDGKA 417
            Y +LL+S+ +    TKAVTS AIAFAGD+ CQ +        E QT ++ T E  H     ++   +    + IDW R   FT +G  ++AP LH WYGFL R +PGT  A   KRV LDQ  FAP F+ VF+S+V  LDGK+
Sbjct:    6 YQALLQSKGIVGIGTKAVTSAAIAFAGDVFCQTVL-------ERQTAQQWTGELSH-----MNKTESKMQVTTIDWKRLSNFTLLGGVLVAPTLHYWYGFLGRAVPGTNFAAAFKRVFLDQAFFAPSFIAVFISSVNALDGKS 136          
BLAST of mRNA_L-elsbetiae_contig7399.16277.1 vs. uniprot
Match: W2Q4U2_PHYPN (Uncharacterized protein n=8 Tax=Phytophthora TaxID=4783 RepID=W2Q4U2_PHYPN)

HSP 1 Score: 102 bits (255), Expect = 2.150e-24
Identity = 59/139 (42.45%), Postives = 80/139 (57.55%), Query Frame = 1
Query:    1 YNSLLESRPLATKAVTSGAIAFAGDLTCQMLAIQVATREEEQTPERTDENDHDRDHLLHGLGTSDVASEIDWGRTVRFTFVGATVLAPALHVWYGFLIRTLPGTAPATVVKRVALDQLLFAPVFLGVFLSTVMLLDGKA 417
            Y SLLE+ PL+TK VT GAIA  GD+ CQ++                             L + D  +++D  R   FTF+G  +++PALHVWYGFL   LPG + A V KR+ALDQL FAP FL + LS+V++L+G +
Sbjct:   45 YASLLETHPLSTKIVTGGAIAGLGDVGCQLV-----------------------------LESEDGDAKLDLKRAAIFTFLGGFLISPALHVWYGFLGSRLPGVSTAAVAKRLALDQLGFAPTFLPIILSSVLMLEGHS 154          
BLAST of mRNA_L-elsbetiae_contig7399.16277.1 vs. uniprot
Match: A0A484DWD7_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484DWD7_BRELC)

HSP 1 Score: 101 bits (252), Expect = 6.140e-24
Identity = 60/139 (43.17%), Postives = 77/139 (55.40%), Query Frame = 1
Query:    1 YNSLLESRPLATKAVTSGAIAFAGDLTCQMLAIQVATREEEQTPERTDENDHDRDHLLHGLGTSDVASEIDWGRTVRFTFVGATVLAPALHVWYGFLIRTLPGTAPATVVKRVALDQLLFAPVFLGVFLSTVMLLDGKA 417
            Y SLL + PL+TK VT G IA  GD+ CQ+L             ER D                   ++ D  RT  FTF+G   ++P LHVWYGFL   LPG + AT+ KR+ LDQ++FAPVFL +FLS+V  L+G A
Sbjct:   45 YASLLVTHPLSTKIVTGGTIAGLGDIGCQVLL----------EGERKD-------------------AKFDLKRTAIFTFLGGVAVSPILHVWYGFLGSRLPGISKATITKRLVLDQIIFAPVFLSIFLSSVQALEGHA 154          
BLAST of mRNA_L-elsbetiae_contig7399.16277.1 vs. uniprot
Match: D0MT87_PHYIT (Uncharacterized protein n=2 Tax=Phytophthora infestans TaxID=4787 RepID=D0MT87_PHYIT)

HSP 1 Score: 101 bits (252), Expect = 6.410e-24
Identity = 61/139 (43.88%), Postives = 79/139 (56.83%), Query Frame = 1
Query:    1 YNSLLESRPLATKAVTSGAIAFAGDLTCQMLAIQVATREEEQTPERTDENDHDRDHLLHGLGTSDVASEIDWGRTVRFTFVGATVLAPALHVWYGFLIRTLPGTAPATVVKRVALDQLLFAPVFLGVFLSTVMLLDGKA 417
            Y SLLE+ PL TK VT GAIA  GD+ CQ+                          +L G    D  +++D  RTV FTF+G  +++P LHVWYGFL   LPG + + V KR+ALDQL FAP FL + LS+V+ L+G A
Sbjct:   45 YASLLETHPLKTKIVTGGAIAGLGDVGCQL--------------------------VLEG---EDGDAKLDVKRTVIFTFLGGLLISPVLHVWYGFLGSRLPGVSTSAVAKRLALDQLGFAPTFLPIILSSVLTLEGHA 154          
BLAST of mRNA_L-elsbetiae_contig7399.16277.1 vs. uniprot
Match: A0A0P1ASJ6_PLAHL (Peroxisomal membrane mpv17 pmp22-like protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1ASJ6_PLAHL)

HSP 1 Score: 100 bits (249), Expect = 1.950e-23
Identity = 58/139 (41.73%), Postives = 77/139 (55.40%), Query Frame = 1
Query:    1 YNSLLESRPLATKAVTSGAIAFAGDLTCQMLAIQVATREEEQTPERTDENDHDRDHLLHGLGTSDVASEIDWGRTVRFTFVGATVLAPALHVWYGFLIRTLPGTAPATVVKRVALDQLLFAPVFLGVFLSTVMLLDGKA 417
            Y SLLE+ P++TK VT G IA  GD+ CQ+                              L + D  +++D  RT  FTF+G  V++P LHVWY FL   LPG + A + KR+ALDQL FAP FL +FLS+V+ L+G A
Sbjct:   45 YASLLETHPISTKIVTGGTIAGLGDVGCQLF-----------------------------LESDDGHAKLDIKRTAIFTFLGGVVISPILHVWYRFLGSRLPGVSTAAITKRLALDQLGFAPTFLPIFLSSVLTLEGHA 154          
BLAST of mRNA_L-elsbetiae_contig7399.16277.1 vs. uniprot
Match: A0A329SFZ2_9STRA (Uncharacterized protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A329SFZ2_9STRA)

HSP 1 Score: 99.4 bits (246), Expect = 4.110e-23
Identity = 60/139 (43.17%), Postives = 74/139 (53.24%), Query Frame = 1
Query:    1 YNSLLESRPLATKAVTSGAIAFAGDLTCQMLAIQVATREEEQTPERTDENDHDRDHLLHGLGTSDVASEIDWGRTVRFTFVGATVLAPALHVWYGFLIRTLPGTAPATVVKRVALDQLLFAPVFLGVFLSTVMLLDGKA 417
            Y SLLE+ PL TK VT GAIA  GD+ CQ++                             L   D  +  D  RT  FTF+G  +++P LHVWYGFL   LPG +   V KR+ALDQL FAP FL V LS+V+ L+G A
Sbjct:   38 YASLLETHPLRTKIVTGGAIAGLGDVGCQLV-----------------------------LEVEDDDARFDVKRTAIFTFLGGFLISPVLHVWYGFLGSRLPGVSTTAVAKRLALDQLGFAPTFLPVILSSVLALEGHA 147          
BLAST of mRNA_L-elsbetiae_contig7399.16277.1 vs. uniprot
Match: A0A662Y1B5_9STRA (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662Y1B5_9STRA)

HSP 1 Score: 99.4 bits (246), Expect = 5.320e-23
Identity = 56/137 (40.88%), Postives = 78/137 (56.93%), Query Frame = 1
Query:    1 YNSLLESRPLATKAVTSGAIAFAGDLTCQMLAIQVATREEEQTPERTDENDHDRDHLLHGLGTSDVASEIDWGRTVRFTFVGATVLAPALHVWYGFLIRTLPGTAPATVVKRVALDQLLFAPVFLGVFLSTVMLLDG 411
            Y +LLE+ PL+TK VT GAIA AGD++CQ+                 D+N                  + D  R   FTF+G  +++P LHVWYGFL + +PG +   +VKR+ALDQL+FAP FL VF S+++ L+G
Sbjct:   42 YATLLETHPLSTKIVTGGAIAGAGDVSCQLFI-------------EADDN-----------------GKFDVKRAAIFTFLGGALISPVLHVWYGFLGKLVPGVSSRAIVKRLALDQLVFAPTFLCVFFSSLLTLEG 148          
BLAST of mRNA_L-elsbetiae_contig7399.16277.1 vs. uniprot
Match: A0A6A3NKH9_9STRA (Uncharacterized protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A6A3NKH9_9STRA)

HSP 1 Score: 99.0 bits (245), Expect = 5.910e-23
Identity = 62/138 (44.93%), Postives = 77/138 (55.80%), Query Frame = 1
Query:    1 YNSLLESRPLATKAVTSGAIAFAGDLTCQMLAIQVATREEEQTPERTDENDHDRDHLLHGLGTSDVASEIDWGRTVRFTFVGATVLAPALHVWYGFLIRTLPGTAPATVVKRVALDQLLFAPVFLGVFLSTVMLLDGK 414
            Y SLLE+ PL+TK  T GAIA  GD+ CQ+    V   +E+  P            LL            D  R   FTF+G  +++P LHVWYGFL   LPG + A V KR+ALDQL FAP FL VFLS+V+ L+G 
Sbjct:   40 YTSLLETHPLSTKIATGGAIAGLGDMGCQL----VLEEKEKHKP------------LL------------DVKRAAIFTFLGGFLISPVLHVWYGFLGSRLPGVSAAAVAKRLALDQLGFAPTFLPVFLSSVLTLEGN 149          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7399.16277.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JL95_9PHAE6.190e-6275.54Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LTH2_ECTSI5.450e-6075.18Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
L1JK07_GUITC1.100e-2444.76Uncharacterized protein n=2 Tax=Guillardia theta T... [more]
W2Q4U2_PHYPN2.150e-2442.45Uncharacterized protein n=8 Tax=Phytophthora TaxID... [more]
A0A484DWD7_BRELC6.140e-2443.17Uncharacterized protein n=1 Tax=Bremia lactucae Ta... [more]
D0MT87_PHYIT6.410e-2443.88Uncharacterized protein n=2 Tax=Phytophthora infes... [more]
A0A0P1ASJ6_PLAHL1.950e-2341.73Peroxisomal membrane mpv17 pmp22-like protein n=1 ... [more]
A0A329SFZ2_9STRA4.110e-2343.17Uncharacterized protein n=2 Tax=Phytophthora TaxID... [more]
A0A662Y1B5_9STRA5.320e-2340.88Uncharacterized protein n=2 Tax=Nothophytophthora ... [more]
A0A6A3NKH9_9STRA5.910e-2344.93Uncharacterized protein n=2 Tax=Phytophthora TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7399contigL-elsbetiae_contig7399:1587..2337 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score194.1
Seed ortholog evalue4.3e-47
Seed eggNOG ortholog2880.D8LTH2
KEGG koko:K01301,ko:K13347,ko:K13348
KEGG Pathwayko04146,map04146
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464
EggNOG free text desc.Belongs to the peroxisomal membrane protein PXMP2 4 family
EggNOG OGsKOG1944@1,KOG1944@2759
Ec32 ortholog descriptionMpv17/PMP22
Ec32 orthologEc-02_005610.1
EC3.4.17.21
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01002
Exons2
Model size417
Cds size417
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816823.9972095-CDS-L-elsbetiae_contig7399:1586..19421622816823.9972095-CDS-L-elsbetiae_contig7399:1586..1942Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7399 1587..1942 -
1691683841.0438194-CDS-L-elsbetiae_contig7399:1586..19421691683841.0438194-CDS-L-elsbetiae_contig7399:1586..1942Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7399 1587..1942 -
1622816824.0083275-CDS-L-elsbetiae_contig7399:2276..23371622816824.0083275-CDS-L-elsbetiae_contig7399:2276..2337Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7399 2277..2337 -
1691683841.0566628-CDS-L-elsbetiae_contig7399:2276..23371691683841.0566628-CDS-L-elsbetiae_contig7399:2276..2337Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7399 2277..2337 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7399.16277.1prot_L-elsbetiae_contig7399.16277.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7399 1587..2337 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7399.16277.1

>prot_L-elsbetiae_contig7399.16277.1 ID=prot_L-elsbetiae_contig7399.16277.1|Name=mRNA_L-elsbetiae_contig7399.16277.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=139bp
YNSLLESRPLATKAVTSGAIAFAGDLTCQMLAIQVATREEEQTPERTDEN
DHDRDHLLHGLGTSDVASEIDWGRTVRFTFVGATVLAPALHVWYGFLIRT
LPGTAPATVVKRVALDQLLFAPVFLGVFLSTVMLLDGKA
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mRNA from alignment at L-elsbetiae_contig7399:1587..2337-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7399.16277.1 ID=mRNA_L-elsbetiae_contig7399.16277.1|Name=mRNA_L-elsbetiae_contig7399.16277.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=751bp|location=Sequence derived from alignment at L-elsbetiae_contig7399:1587..2337- (Laminarionema elsbetiae ELsaHSoW15)
TACAACTCTCTGCTGGAATCTCGACCTCTTGCGACAAAAGCGGTTACCTC GGGAGCAATCGGTGAGATACACTGCCTTCTGCAGTCGAACGAACGGTGTC CGGTTTGGGAGGGTCAATAACGTCGGGCGCGAAGTCACTGGACGCGAAGT CACTGGGGGTGTTATGTCGACACGAAATATTTTCGCACACGTGTGTTTTC CCAAGCCACCTTTCCTGCGCCCCCGCCCTTTTGGATGCTCATCGTTCAGA TGGAGCAAGGTGAAATCACCGGTATGTCAAATTAGTAAAGAGTTACAGAC AACTTTTCTGTGAAACGAGAAAATGGCCGGGTGCTTACCCCCCCCGTGCC TACTTTTTGCCGCATTGTTTGCTCGTGCTTTTCACACCCACGCAGCTTTC GCCGGGGACTTGACCTGCCAGATGTTGGCGATACAGGTCGCGACGAGAGA AGAGGAGCAAACACCGGAGAGGACGGACGAGAATGATCACGACCGCGATC ACCTCTTGCACGGTTTAGGCACAAGCGATGTCGCGAGCGAGATCGATTGG GGCCGCACCGTACGTTTTACGTTTGTCGGGGCGACTGTTCTGGCCCCTGC GCTCCATGTCTGGTACGGGTTCCTGATTCGAACGCTTCCGGGCACCGCTC CGGCAACTGTCGTCAAGAGGGTGGCGCTTGATCAGCTGCTGTTTGCGCCG GTGTTTTTGGGCGTGTTTCTGTCGACGGTGATGCTGTTGGATGGCAAAGC G
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7399:1587..2337-

>mRNA_L-elsbetiae_contig7399.16277.1 ID=mRNA_L-elsbetiae_contig7399.16277.1|Name=mRNA_L-elsbetiae_contig7399.16277.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=834bp|location=Sequence derived from alignment at L-elsbetiae_contig7399:1587..2337- (Laminarionema elsbetiae ELsaHSoW15)
TACAACTCTCTGCTGGAATCTCGACCTCTTGCGACAAAAGCGGTTACCTC
GGGAGCAATCGTACAACTCTCTGCTGGAATCTCGACCTCTTGCGACAAAA
GCGGTTACCTCGGGAGCAATCGCTTTCGCCGGGGACTTGACCTGCCAGAT
GTTGGCGATACAGGTCGCGACGAGAGAAGAGGAGCAAACACCGGAGAGGA
CGGACGAGAATGATCACGACCGCGATCACCTCTTGCACGGTTTAGGCACA
AGCGATGTCGCGAGCGAGATCGATTGGGGCCGCACCGTACGTTTTACGTT
TGTCGGGGCGACTGTTCTGGCCCCTGCGCTCCATGTCTGGTACGGGTTCC
TGATTCGAACGCTTCCGGGCACCGCTCCGGCAACTGTCGTCAAGAGGGTG
GCGCTTGATCAGCTGCTGTTTGCGCCGGTGTTTTTGGGCGTGTTTCTGTC
GACGGTGATGCTGTTGGATGGCAAAGCGCTTTCGCCGGGGACTTGACCTG
CCAGATGTTGGCGATACAGGTCGCGACGAGAGAAGAGGAGCAAACACCGG
AGAGGACGGACGAGAATGATCACGACCGCGATCACCTCTTGCACGGTTTA
GGCACAAGCGATGTCGCGAGCGAGATCGATTGGGGCCGCACCGTACGTTT
TACGTTTGTCGGGGCGACTGTTCTGGCCCCTGCGCTCCATGTCTGGTACG
GGTTCCTGATTCGAACGCTTCCGGGCACCGCTCCGGCAACTGTCGTCAAG
AGGGTGGCGCTTGATCAGCTGCTGTTTGCGCCGGTGTTTTTGGGCGTGTT
TCTGTCGACGGTGATGCTGTTGGATGGCAAAGCG
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