mRNA_L-elsbetiae_contig7397.16275.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7397.16275.1
Unique NamemRNA_L-elsbetiae_contig7397.16275.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7397.16275.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7397contigL-elsbetiae_contig7397:7676..9895 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size858
Cds size477
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7397.16275.1prot_L-elsbetiae_contig7397.16275.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7397 7916..9754 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816823.729825-UTR-L-elsbetiae_contig7397:7675..79151622816823.729825-UTR-L-elsbetiae_contig7397:7675..7915Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7397 7676..7915 +
1691683840.8823574-UTR-L-elsbetiae_contig7397:7675..79151691683840.8823574-UTR-L-elsbetiae_contig7397:7675..7915Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7397 7676..7915 +
1622816823.7593694-UTR-L-elsbetiae_contig7397:9754..98951622816823.7593694-UTR-L-elsbetiae_contig7397:9754..9895Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7397 9755..9895 +
1691683840.9135363-UTR-L-elsbetiae_contig7397:9754..98951691683840.9135363-UTR-L-elsbetiae_contig7397:9754..9895Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7397 9755..9895 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816823.7393131-CDS-L-elsbetiae_contig7397:7915..79871622816823.7393131-CDS-L-elsbetiae_contig7397:7915..7987Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7397 7916..7987 +
1691683840.895907-CDS-L-elsbetiae_contig7397:7915..79871691683840.895907-CDS-L-elsbetiae_contig7397:7915..7987Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7397 7916..7987 +
1622816823.7485425-CDS-L-elsbetiae_contig7397:9349..97541622816823.7485425-CDS-L-elsbetiae_contig7397:9349..9754Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7397 9350..9754 +
1691683840.9047396-CDS-L-elsbetiae_contig7397:9349..97541691683840.9047396-CDS-L-elsbetiae_contig7397:9349..9754Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7397 9350..9754 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7397.16275.1

>prot_L-elsbetiae_contig7397.16275.1 ID=prot_L-elsbetiae_contig7397.16275.1|Name=mRNA_L-elsbetiae_contig7397.16275.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=159bp
MVYLKRRWRTTGTCKGTRNESLNAITPIFASQRRPSGIVSVLRLRLKHLP
DEPISPISTVVLGACSLRHAESLYMFMEMLRALHSDFLGCPHNCYVVSGM
GMPSLPCGVNPPGVKSRQVRSHSVTLVLKRAAPRPIASRVGWKPRSCPTT
AVQLFPAE*
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mRNA from alignment at L-elsbetiae_contig7397:7676..9895+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7397.16275.1 ID=mRNA_L-elsbetiae_contig7397.16275.1|Name=mRNA_L-elsbetiae_contig7397.16275.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2220bp|location=Sequence derived from alignment at L-elsbetiae_contig7397:7676..9895+ (Laminarionema elsbetiae ELsaHSoW15)
AAAAAGAGAGAGCCAGTTTTTTGGGATCCCGGGAATCAGGCCGCCACCGC
AGGTATGCGACGACAAGCTGGTCACCCTGTCTTCGCTCTGCGATTTGTTG
GATTGATGCCTCGAGTTCTCACGGCCGGCCAAGAAACTCGTAGGCTCGGC
CGGATAGGGGCTACTCGATTCCAAAGAGCATGTACAGCGTAGACATGTAG
AGGCTTGCCGAAGAGCCTGGCGAGGAGCGGCAGCGGAGAGATGGTGTATT
TGAAACGACGATGGCGAACTACAGGGACTTGCAAAGGCACGAGGAATGAA
AGCCTCAACGCGGTAAGCACCTTCTTGTAGCTTGCATATATATCTTGCAC
GGCTTGCATATCTCACGGTATCTACTGTTTCCACCTCTTCTCGCTCGTGG
TTGCGTAGGTGCGTAAGATAACATCCCCCCCCTAGGCCGTCTACATCGGC
ACACCTTTCAGCAATTGTCTACATGTACTCTCTCTTCATCTATCAGTAGC
AAGGGTATAGGAAGACCAATGCATCCTCACAAAGCTCGATTAGCTACATA
GTTTCCTGTGGACTATGGGGCATTGGCCCACCCTCTTTGTTTTCCGGTGG
TGCCGGCGTGCTTTGGGATGGCGAGTGGTCCACAGACAGGACTTGAGATC
CAGGGGCTCGGTGACGAGCACGATTTGATTTAAGTTTTTGTAATGTGCAT
TTTTTGGGTATGCTGAAACTGACAGCACCGGCCCTCCCAAAATCAACACT
TTCCAGTTCGGCCCTTAGCGTCCCGTAGCGATCTGAAGTGACCCACTCCA
ACGTCACAGAGTTAGTAGTTGCAGTTCTCTACAGAAAAATGCTCCGCTCC
GAAATTTTTAGGTAGCTGGTTTGGGGGCGGAAATGTTTCTCTCGGAGGTG
CTAAAAACTGTGATTTCACAGGACTGTGACAAACACCTCCACCTGACAGC
TCAGGAGATCAGATAGCTCGCCCTTCACGGGCATTTTTTATCCGTTAGAT
GGTCTTATCCACTAGACCACTCAGTCAAGCGCTTGACTGAGTGGTCTAGT
GGATATGTCCATCTAACGAACAAAAGATACACCCGAGTTCGAATCTCGCC
AGCAGGTGTCGCCTTTTTCGGATGAATGAGAAAAATAAGACAGGGCCTTC
TCCGGCAGGAAGGAGAAGAAGAGCGCAGTGCCTTCTCAAGAGAGGAGAAG
AGCACGCGTTGGATGGCACACTAGAGGGCGTATTCATAGTCGACCCCAAC
CACTAGTAAGCGCTGGCGAGGGGGTTAGATGTATGTCCCCAGAGAGAGTG
GAATCCCCGGAGATCCCTGCTGGCGAGTCCATTTGGACCGGAGTATATAT
TTTGTTCGTTAGATGGTCTTATCCACTAGACCACTCAGTCAAGCGGCTTA
CTGAGTGGTCTAGACTAGTGGTTTTAAGTCCATCTAACAACAACATTTAC
GAGCATACGAATAAGAACAGCGGCATCTTTCGTGTGCTTGTGGGGAAGTA
TCAAGGCCGGGTGCTGCGCGTTGTGCGCCTATTTCTCAATGCGATTTGTG
CGTTTGTGTGTTTTCTCATGTCTGGGTGCCATGCACATGTTATCGCCGTC
TTGCACATAAAACCCACTCTCGCATTGTAAGTATGATCGCACTTTTATCC
ACGTCTGTTTGTGTTCATTTCCAGATCACGCCCATCTTCGCCAGCCAACG
TCGTCCTTCAGGGATTGTCTCCGTGTTACGGCTACGGCTTAAACACCTAC
CGGATGAACCCATCTCACCCATCTCAACGGTTGTCCTTGGTGCATGCAGC
CTGAGGCATGCCGAGAGTCTGTATATGTTTATGGAGATGCTTCGTGCTCT
GCATTCTGATTTTCTCGGATGCCCGCACAATTGCTATGTAGTGAGCGGGA
TGGGGATGCCATCCCTCCCCTGCGGGGTGAACCCCCCCGGCGTGAAGTCT
CGGCAGGTCAGGAGCCATTCGGTGACGCTGGTGTTGAAGAGAGCGGCCCC
GAGGCCAATTGCGTCGAGGGTCGGTTGGAAACCCCGCTCATGCCCCACCA
CAGCAGTCCAGCTTTTTCCGGCCGAGTAAATAGAGGTAATTAATATTACA
GGAATCGGGATCTTTAGGACTGGGTCGCTGACAGCGCAGCGGGTTGATTC
GACCCTCTCTGTAAACAGCATGTTAACTTCGTGCCCTCATAGCGCGCGCC
CAGACGCACGGCGAGACTCG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7397:7676..9895+

>mRNA_L-elsbetiae_contig7397.16275.1 ID=mRNA_L-elsbetiae_contig7397.16275.1|Name=mRNA_L-elsbetiae_contig7397.16275.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=954bp|location=Sequence derived from alignment at L-elsbetiae_contig7397:7676..9895+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGTGTATTTGAAACGACGATGGCGAACTACAGGGACTTGCAAAGGCAC
GAGGAATGAAAGCCTCAACGCGATGGTGTATTTGAAACGACGATGGCGAA
CTACAGGGACTTGCAAAGGCACGAGGAATGAAAGCCTCAACGCGATCACG
CCCATCTTCGCCAGCCAACGTCGTCCTTCAGGGATTGTCTCCGTGTTACG
GCTACGGCTTAAACACCTACCGGATGAACCCATCTCACCCATCTCAACGG
TTGTCCTTGGTGCATGCAGCCTGAGGCATGCCGAGAGTCTGTATATGTTT
ATGGAGATGCTTCGTGCTCTGCATTCTGATTTTCTCGGATGCCCGCACAA
TTGCTATGTAGTGAGCGGGATGGGGATGCCATCCCTCCCCTGCGGGGTGA
ACCCCCCCGGCGTGAAGTCTCGGCAGGTCAGGAGCCATTCGGTGACGCTG
GTGTTGAAGAGAGCGGCCCCGAGGCCAATTGCGTCGAGGGTCGGTTGGAA
ACCCCGCTCATGCCCCACCACAGCAGTCCAGCTTTTTCCGGCCGAGTAAA
TCACGCCCATCTTCGCCAGCCAACGTCGTCCTTCAGGGATTGTCTCCGTG
TTACGGCTACGGCTTAAACACCTACCGGATGAACCCATCTCACCCATCTC
AACGGTTGTCCTTGGTGCATGCAGCCTGAGGCATGCCGAGAGTCTGTATA
TGTTTATGGAGATGCTTCGTGCTCTGCATTCTGATTTTCTCGGATGCCCG
CACAATTGCTATGTAGTGAGCGGGATGGGGATGCCATCCCTCCCCTGCGG
GGTGAACCCCCCCGGCGTGAAGTCTCGGCAGGTCAGGAGCCATTCGGTGA
CGCTGGTGTTGAAGAGAGCGGCCCCGAGGCCAATTGCGTCGAGGGTCGGT
TGGAAACCCCGCTCATGCCCCACCACAGCAGTCCAGCTTTTTCCGGCCGA
GTAA
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