mRNA_L-elsbetiae_contig727.16137.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_L-elsbetiae_contig727.16137.1
Unique Name	mRNA_L-elsbetiae_contig727.16137.1
Type	mRNA
Organism	Laminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)

Homology

[Close]

BLAST of mRNA_L-elsbetiae_contig727.16137.1 vs. uniprot
Match: W5RG75_COSCS (Uncharacterized protein n=1 Tax=Costaria costata TaxID=2872 RepID=W5RG75_COSCS)

HSP 1 Score: 97.1 bits (240), Expect = 1.710e-24
Identity = 46/64 (71.88%), Postives = 58/64 (90.62%), Query Frame = 1

Query:    1 RKINKKKVFLWKEKTFALFNGSNLKASKAAKIQLSLENAKLYSVPLYLKPPKLSLGCPIVMVVY 192
            R + KK+ FL K++TFALFNGSNLKAS+ +KI+LSL+NAKLYSVPLYLKPPKL LGCP++M++Y
Sbjct:    7 RHLRKKRFFLPKKRTFALFNGSNLKASQISKIRLSLQNAKLYSVPLYLKPPKLGLGCPLIMIIY 70

[Close]

BLAST of mRNA_L-elsbetiae_contig727.16137.1 vs. uniprot
Match: A0A8F0K1E6_9PHAE (Uncharacterized protein n=1 Tax=Thalassiophyllum clathrus TaxID=112506 RepID=A0A8F0K1E6_9PHAE)

HSP 1 Score: 94.7 bits (234), Expect = 1.430e-23
Identity = 44/64 (68.75%), Postives = 57/64 (89.06%), Query Frame = 1

Query:    1 RKINKKKVFLWKEKTFALFNGSNLKASKAAKIQLSLENAKLYSVPLYLKPPKLSLGCPIVMVVY 192
            R + KK+ FL K++TFALFNGSNLKAS+ +KI+LSL+NAKLY++PLYL PPKL LGCP++MV+Y
Sbjct:    7 RHLRKKRFFLPKQRTFALFNGSNLKASQVSKIRLSLQNAKLYAIPLYLNPPKLGLGCPLIMVIY 70

[Close]

BLAST of mRNA_L-elsbetiae_contig727.16137.1 vs. uniprot
Match: A0A8F0FCU5_9PHAE (Uncharacterized protein n=4 Tax=Alariaceae TaxID=2887 RepID=A0A8F0FCU5_9PHAE)

HSP 1 Score: 94.4 bits (233), Expect = 2.140e-23
Identity = 45/64 (70.31%), Postives = 56/64 (87.50%), Query Frame = 1

Query:    1 RKINKKKVFLWKEKTFALFNGSNLKASKAAKIQLSLENAKLYSVPLYLKPPKLSLGCPIVMVVY 192
            R + KK+ FL K++TFALFNGSNLKASK +KI+L L+NAKLYSVPLYL PPKL LGCP++M++Y
Sbjct:    7 RHLRKKRFFLPKQRTFALFNGSNLKASKISKIRLLLQNAKLYSVPLYLTPPKLGLGCPLIMIIY 70

[Close]

BLAST of mRNA_L-elsbetiae_contig727.16137.1 vs. uniprot
Match: A0A4D6E4R6_9PHAE (Uncharacterized protein n=1 Tax=Nereocystis luetkeana TaxID=117523 RepID=A0A4D6E4R6_9PHAE)

HSP 1 Score: 93.6 bits (231), Expect = 4.200e-23
Identity = 45/64 (70.31%), Postives = 56/64 (87.50%), Query Frame = 1

Query:    1 RKINKKKVFLWKEKTFALFNGSNLKASKAAKIQLSLENAKLYSVPLYLKPPKLSLGCPIVMVVY 192
            R + KK+ FL K+ TFALFNGSNLKAS+ +KI+L L+NAKLYSVPLYLKPPKL +GCPI+M++Y
Sbjct:    7 RHLRKKRFFLPKQGTFALFNGSNLKASQISKIRLLLQNAKLYSVPLYLKPPKLGIGCPIIMIIY 70

[Close]

BLAST of mRNA_L-elsbetiae_contig727.16137.1 vs. uniprot
Match: A0A8F0FD44_9PHAE (Uncharacterized protein n=4 Tax=Alariaceae TaxID=2887 RepID=A0A8F0FD44_9PHAE)

HSP 1 Score: 93.2 bits (230), Expect = 5.790e-23
Identity = 46/64 (71.88%), Postives = 56/64 (87.50%), Query Frame = 1

Query:    1 RKINKKKVFLWKEKTFALFNGSNLKASKAAKIQLSLENAKLYSVPLYLKPPKLSLGCPIVMVVY 192
            R + KK+ FL +++TFALFNGSNLKAS+ AKI+L L+NAKLYSVPLYL PPKL LGCP++MVVY
Sbjct:    7 RHLRKKRFFLPEQRTFALFNGSNLKASQIAKIRLLLQNAKLYSVPLYLTPPKLGLGCPLIMVVY 70

[Close]

BLAST of mRNA_L-elsbetiae_contig727.16137.1 vs. uniprot
Match: A0A8F0FC73_9PHAE (Uncharacterized protein n=1 Tax=Chorda asiatica TaxID=1281577 RepID=A0A8F0FC73_9PHAE)

HSP 1 Score: 92.8 bits (229), Expect = 8.210e-23
Identity = 45/64 (70.31%), Postives = 55/64 (85.94%), Query Frame = 1

Query:    1 RKINKKKVFLWKEKTFALFNGSNLKASKAAKIQLSLENAKLYSVPLYLKPPKLSLGCPIVMVVY 192
            R++ KK+ FL  ++TFALFNGSNLKASK AKI+LS++NAKLYSVPLYL PPKL  GCP +MV+Y
Sbjct:    7 RQLRKKRFFLPNQRTFALFNGSNLKASKVAKIRLSIQNAKLYSVPLYLMPPKLGTGCPNIMVIY 70

[Close]

BLAST of mRNA_L-elsbetiae_contig727.16137.1 vs. uniprot
Match: D0IPU2_SACAN (Uncharacterized protein ORF130 n=6 Tax=Laminariaceae TaxID=33636 RepID=D0IPU2_SACAN)

HSP 1 Score: 92.0 bits (227), Expect = 1.700e-22
Identity = 42/64 (65.62%), Postives = 57/64 (89.06%), Query Frame = 1

Query:    1 RKINKKKVFLWKEKTFALFNGSNLKASKAAKIQLSLENAKLYSVPLYLKPPKLSLGCPIVMVVY 192
            R + KK+ FL +++TFALFNGSNLK+S+ +KI++SL+NAKLYSVPLYL PPKL +GCPI+M++Y
Sbjct:    7 RHLRKKRFFLPEQRTFALFNGSNLKSSQISKIRISLQNAKLYSVPLYLNPPKLGIGCPIIMIIY 70

[Close]

BLAST of mRNA_L-elsbetiae_contig727.16137.1 vs. uniprot
Match: S4S3S2_LAMHY (Uncharacterized protein n=3 Tax=Laminaria TaxID=33637 RepID=S4S3S2_LAMHY)

HSP 1 Score: 91.7 bits (226), Expect = 2.340e-22
Identity = 43/64 (67.19%), Postives = 55/64 (85.94%), Query Frame = 1

Query:    1 RKINKKKVFLWKEKTFALFNGSNLKASKAAKIQLSLENAKLYSVPLYLKPPKLSLGCPIVMVVY 192
            R + KK+ FL K++TFALFNGSNLK S+ +KI+L L+NAKLYSVPLYL PPKL LGCP++M++Y
Sbjct:    7 RHLRKKRFFLPKQRTFALFNGSNLKTSQISKIRLLLQNAKLYSVPLYLNPPKLGLGCPLIMIIY 70

[Close]

BLAST of mRNA_L-elsbetiae_contig727.16137.1 vs. uniprot
Match: F8UWL7_9PHAE (Uncharacterized protein ORF130 n=19 Tax=Saccharina TaxID=309357 RepID=F8UWL7_9PHAE)

HSP 1 Score: 91.7 bits (226), Expect = 2.410e-22
Identity = 43/64 (67.19%), Postives = 57/64 (89.06%), Query Frame = 1

Query:    1 RKINKKKVFLWKEKTFALFNGSNLKASKAAKIQLSLENAKLYSVPLYLKPPKLSLGCPIVMVVY 192
            R + KK+ FL +++TFALFNGSNLK+S+ +KI++SL+NAKLYSVPLYL PPKL +GCPIVM++Y
Sbjct:    7 RHLRKKRFFLPEQRTFALFNGSNLKSSQISKIRVSLKNAKLYSVPLYLNPPKLGIGCPIVMIIY 70

[Close]

BLAST of mRNA_L-elsbetiae_contig727.16137.1 vs. uniprot
Match: A0A516ICI3_9PHAE (Uncharacterized protein n=3 Tax=Lessonia TaxID=105411 RepID=A0A516ICI3_9PHAE)

HSP 1 Score: 90.1 bits (222), Expect = 9.480e-22
Identity = 43/64 (67.19%), Postives = 56/64 (87.50%), Query Frame = 1

Query:    1 RKINKKKVFLWKEKTFALFNGSNLKASKAAKIQLSLENAKLYSVPLYLKPPKLSLGCPIVMVVY 192
            R + KK+ FL ++ TFALFNGSNLKA++ +KI+L L+NAKLYSVPLYLKPPKL LGCP+++V+Y
Sbjct:    7 RHLRKKRFFLAEQYTFALFNGSNLKATQISKIRLLLQNAKLYSVPLYLKPPKLGLGCPLIIVIY 70

The following BLAST results are available for this feature:

BLAST of mRNA_L-elsbetiae_contig727.16137.1 vs. uniprot

BLAST of mRNA_L-elsbetiae_contig727.16137.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
W5RG75_COSCS	1.710e-24	71.88	Uncharacterized protein n=1 Tax=Costaria costata T...	[more]
A0A8F0K1E6_9PHAE	1.430e-23	68.75	Uncharacterized protein n=1 Tax=Thalassiophyllum c...	[more]
A0A8F0FCU5_9PHAE	2.140e-23	70.31	Uncharacterized protein n=4 Tax=Alariaceae TaxID=2...	[more]
A0A4D6E4R6_9PHAE	4.200e-23	70.31	Uncharacterized protein n=1 Tax=Nereocystis luetke...	[more]
A0A8F0FD44_9PHAE	5.790e-23	71.88	Uncharacterized protein n=4 Tax=Alariaceae TaxID=2...	[more]
A0A8F0FC73_9PHAE	8.210e-23	70.31	Uncharacterized protein n=1 Tax=Chorda asiatica Ta...	[more]
D0IPU2_SACAN	1.700e-22	65.63	Uncharacterized protein ORF130 n=6 Tax=Laminariace...	[more]
S4S3S2_LAMHY	2.340e-22	67.19	Uncharacterized protein n=3 Tax=Laminaria TaxID=33...	[more]
F8UWL7_9PHAE	2.410e-22	67.19	Uncharacterized protein ORF130 n=19 Tax=Saccharina...	[more]
A0A516ICI3_9PHAE	9.480e-22	67.19	Uncharacterized protein n=3 Tax=Lessonia TaxID=105...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
L-elsbetiae_contig727	contig	L-elsbetiae_contig727:8560..8751 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW15	2021-02-24

Properties


Property Name	Value
Hectar predicted targeting category	other localisation
Exons	1
Model size	192
Cds size	192
Stop	0
Start	0

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622816810.0539787-CDS-L-elsbetiae_contig727:8559..8751	1622816810.0539787-CDS-L-elsbetiae_contig727:8559..8751	Laminarionema elsbetiae ELsaHSoW15	CDS	L-elsbetiae_contig727 8560..8751 +
1691683830.5788922-CDS-L-elsbetiae_contig727:8559..8751	1691683830.5788922-CDS-L-elsbetiae_contig727:8559..8751	Laminarionema elsbetiae ELsaHSoW15	CDS	L-elsbetiae_contig727 8560..8751 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_L-elsbetiae_contig727.16137.1	prot_L-elsbetiae_contig727.16137.1	Laminarionema elsbetiae ELsaHSoW15	polypeptide	L-elsbetiae_contig727 8560..8751 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at L-elsbetiae_contig727:8560..8751+
coding sequence from alignment at L-elsbetiae_contig727:8560..8751+

protein sequence of mRNA_L-elsbetiae_contig727.16137.1

>prot_L-elsbetiae_contig727.16137.1 ID=prot_L-elsbetiae_contig727.16137.1|Name=mRNA_L-elsbetiae_contig727.16137.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=64bp
RKINKKKVFLWKEKTFALFNGSNLKASKAAKIQLSLENAKLYSVPLYLKP
PKLSLGCPIVMVVY

mRNA from alignment at L-elsbetiae_contig727:8560..8751+

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_L-elsbetiae_contig727.16137.1 ID=mRNA_L-elsbetiae_contig727.16137.1|Name=mRNA_L-elsbetiae_contig727.16137.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=192bp|location=Sequence derived from alignment at L-elsbetiae_contig727:8560..8751+ (Laminarionema elsbetiae ELsaHSoW15)
AGAAAAATAAATAAAAAAAAGGTTTTTTTATGGAAAGAAAAAACTTTTGC
TCTCTTTAATGGTAGTAATTTAAAAGCTTCTAAAGCAGCAAAAATACAAT
TATCTTTAGAAAACGCCAAACTTTACTCTGTACCTTTATATTTAAAACCG
CCAAAATTAAGCCTAGGCTGTCCCATTGTTATGGTAGTTTAT

Coding sequence (CDS) from alignment at L-elsbetiae_contig727:8560..8751+

>mRNA_L-elsbetiae_contig727.16137.1 ID=mRNA_L-elsbetiae_contig727.16137.1|Name=mRNA_L-elsbetiae_contig727.16137.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=384bp|location=Sequence derived from alignment at L-elsbetiae_contig727:8560..8751+ (Laminarionema elsbetiae ELsaHSoW15)
AGAAAAATAAATAAAAAAAAGGTTTTTTTATGGAAAGAAAAAACTTTTGC
TCTCTTTAATGGTAGTAATTTAAAAGCTTCTAAAGCAGCAAAAATACAAT
TATCTTTAGAAAACGCCAAACTTTACTCTGTACCTTTATATTTAAAACCG
CCAAAATTAAGCCTAGGCTGTCCCATTGTTATGGTAGTTTATAGAAAAAT
AAATAAAAAAAAGGTTTTTTTATGGAAAGAAAAAACTTTTGCTCTCTTTA
ATGGTAGTAATTTAAAAGCTTCTAAAGCAGCAAAAATACAATTATCTTTA
GAAAACGCCAAACTTTACTCTGTACCTTTATATTTAAAACCGCCAAAATT
AAGCCTAGGCTGTCCCATTGTTATGGTAGTTTAT