mRNA_L-elsbetiae_contig7254.16119.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7254.16119.1
Unique NamemRNA_L-elsbetiae_contig7254.16119.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig7254.16119.1 vs. uniprot
Match: A0A6H5L7E0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7E0_9PHAE)

HSP 1 Score: 105 bits (261), Expect = 5.780e-21
Identity = 58/86 (67.44%), Postives = 65/86 (75.58%), Query Frame = 3 
Query:  810 DRGGVGGGAPVTAARWAEIGGMVASAVKMGITEGPDP---SDNXXXXXXAAGTLRTGSLSPQGHKISLEAMLRLEVEPASGRFESS 1058
            + G V  G PVTAARWAE+ GMV SA+KMGITEGPD    S++      AAG+LRTGSL+PQGHKISL AMLRLEVEPASG F  S
Sbjct: 1120 ENGEVWAGVPVTAARWAEVRGMVTSAIKMGITEGPDSTSHSNDSGTSLRAAGSLRTGSLNPQGHKISLGAMLRLEVEPASGTFRIS 1205
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7254.16119.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L7E0_9PHAE5.780e-2167.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7254contigL-elsbetiae_contig7254:2531..4488 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons2
Model size1066
Cds size633
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7254.16119.1prot_L-elsbetiae_contig7254.16119.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7254 2688..3320 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816808.413449-UTR-L-elsbetiae_contig7254:2530..26871622816808.413449-UTR-L-elsbetiae_contig7254:2530..2687Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7254 2531..2687 +
1691683829.2094288-UTR-L-elsbetiae_contig7254:2530..26871691683829.2094288-UTR-L-elsbetiae_contig7254:2530..2687Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7254 2531..2687 +
1622816808.4390798-UTR-L-elsbetiae_contig7254:3320..34271622816808.4390798-UTR-L-elsbetiae_contig7254:3320..3427Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7254 3321..3427 +
1691683829.2397404-UTR-L-elsbetiae_contig7254:3320..34271691683829.2397404-UTR-L-elsbetiae_contig7254:3320..3427Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7254 3321..3427 +
1622816808.4516954-UTR-L-elsbetiae_contig7254:4319..44881622816808.4516954-UTR-L-elsbetiae_contig7254:4319..4488Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7254 4320..4488 +
1691683829.2544417-UTR-L-elsbetiae_contig7254:4319..44881691683829.2544417-UTR-L-elsbetiae_contig7254:4319..4488Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7254 4320..4488 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816808.4253676-CDS-L-elsbetiae_contig7254:2687..33201622816808.4253676-CDS-L-elsbetiae_contig7254:2687..3320Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7254 2688..3320 +
1691683829.222847-CDS-L-elsbetiae_contig7254:2687..33201691683829.222847-CDS-L-elsbetiae_contig7254:2687..3320Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7254 2688..3320 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7254.16119.1

>prot_L-elsbetiae_contig7254.16119.1 ID=prot_L-elsbetiae_contig7254.16119.1|Name=mRNA_L-elsbetiae_contig7254.16119.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=211bp
MRRSLSCRRVSGICLQNFVPPVTDGRPEKRAAARERAATALPPRLKGEEP
RAVLRRLACTLEFPLSSSSPRHCCSYLPARPLYCHCCCLTAPPPLYCCCC
YLPPHRFSLAAVVASPPRRSLATVVIYLTAPPPLFSSRHRPRLTGHGKPR
HAMHNTGTAVTGTATINIDTLTNCRLCIPPPPISRSWKLRRCLHAIRSWT
RRTSRADGRC*
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mRNA from alignment at L-elsbetiae_contig7254:2531..4488+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7254.16119.1 ID=mRNA_L-elsbetiae_contig7254.16119.1|Name=mRNA_L-elsbetiae_contig7254.16119.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1958bp|location=Sequence derived from alignment at L-elsbetiae_contig7254:2531..4488+ (Laminarionema elsbetiae ELsaHSoW15)
GCTGTTTTTTCAGTTGTAAATTTAGGAGTAATTCTGCTGCCTTCGTCTGT
TTGCTTTGGTCTTGCATAACCCCCTGCCGGTGTGCTCTCATGAGCTCGCT
CCGAAGGGGGGTCTTGTACATCGAGTTATTTGTTTTGTGTCGAGGTTCTT
TGTCCGGATGAGGCGTTCTCTCTCGTGTCGACGGGTTTCGGGTATATGCC
TTCAGAATTTTGTGCCGCCGGTGACTGATGGCCGACCGGAAAAGCGAGCA
GCGGCCCGGGAGAGGGCCGCGACCGCCCTCCCCCCGCGCCTTAAGGGGGA
AGAGCCGCGTGCAGTGCTGCGACGACTTGCTTGTACTCTCGAGTTTCCTC
TGTCCTCTTCATCACCCCGCCACTGCTGCTCTTACCTCCCCGCCCGCCCG
CTCTATTGCCACTGTTGTTGCCTCACCGCCCCGCCCCCGCTCTATTGCTG
CTGTTGTTATCTACCTCCCCACCGCTTCTCTCTTGCCGCTGTTGTTGCCT
CACCGCCCCGCCGCTCCCTTGCCACTGTTGTTATTTACCTCACCGCCCCG
CCCCCGCTCTTTTCCTCTCGGCACCGGCCGCGACTGACCGGACACGGAAA
ACCACGCCACGCCATGCACAACACGGGTACGGCTGTGACCGGAACGGCGA
CGATAAACATCGACACCTTGACAAACTGCCGGCTATGTATCCCCCCCCCC
CCCATCAGCCGTTCGTGGAAGCTCCGGCGCTGCCTACACGCGATACGCAG
CTGGACGCGGAGGACTTCGCGCGCCGATGGGAGATGCTAGGGAACGCATC
GAAAGAGGAGACCGGGGAGGTGTGGGCGGGGGAGCGCCGGTAACGGCCGC
ACGGTGGGCCGAGATCGGCGGCATGGTGGCATCGGCGGTCAAGATGGGTG
AGTGTTTTTTCAAGACGGGTCTCAGTCCGAAGGAGGGAGGGCGAAGCGGG
CGGGCGTTTGGAGATCCATGTTGTATGTATGTATGTACTTACGTTTGTTT
AACTTTTTCTTGGGCGGCGTCGAGTGTGCCTGCCCCCCCTAAGTGTTTTT
TGTGACCACGGGCCCCAGGGGGCCCCGTGGATGCCTTTTGACTATGTAGG
TACATAGAGGGCTAATGTGGGAAACACCAACAACAGCAACAGCAACAACT
TACTGCGTACATAGTGGGGGCACACACACACACACACACCGTGGTGCTGG
TTCGCTTCTTCGTCATTGCGGGGGTGGGTAGGGATGGAGGGGGGGAGAGG
GGGGAAGGGGGGGGGGGAGGCAGCGAGGAGGTTCCAGCAGAGGTCCGCTC
TGAGACGGACGCTTGCAGGGATATGATGGACCGAGAGAGCGAGCGAGCCA
TTTAACGAGAGAGAAAACGGAGGGAAACTGGTTACTTTCTTAAGAGAGAA
AGGGAAGGGCAATCAATACATGATGGTCCCGGTTACTGGTGTGTGTCACA
GACGAGTTGGTCTACCGGGGGCGTGCAAGTAGTGGCGGGTCTGTTATGCG
TTCTTTCAAGTTATACATACATACACTTAAAATATACTCCTACTAAGAAG
GGTCTACTATGTATTCTTCCAGGTTATACAACATATACTTGAAATATACC
CGACTAGTTCTGTTTCGTCCCCACTTTTCCCTCTCCTCTAAACCTGCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCGCGAGGACGTCGACGGGCG
CCCCCCCCACCAAAAAAAANNNNNNNNNNCCCCACCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCTCGACTCCACTCCAGGAATCACGGAA
GGCCCCGACCCCTCCGACAACAACAACAACAACAACAGCGCCGCGGGAAC
CCTCCGGACCGGGTCGCTCTCCCCGCAGGGCCACAAGATCTCTCTCGAGG
CGATGCTGCGCCTCGAGGTCGAGCCGGCGTCGGGAAGGTTCGAATCGTCG
TGCGAGCG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7254:2531..4488+

>mRNA_L-elsbetiae_contig7254.16119.1 ID=mRNA_L-elsbetiae_contig7254.16119.1|Name=mRNA_L-elsbetiae_contig7254.16119.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1266bp|location=Sequence derived from alignment at L-elsbetiae_contig7254:2531..4488+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAGGCGTTCTCTCTCGTGTCGACGGGTTTCGGGTATATGCCTTCAGAA
TTTTGTGCCGCCGGTGACTGATGGCCGACCGGAAAAGCGAGCAGCGGCCC
GGGAGAGGGCCGCGACCGCCCTCCCCCCGCGCCTTAAGGGGGAAGAGCCG
CGTGCAGTGCTGCGACGACTTGCTTGTACTCTCGAGTTTCCTCTGTCCTC
TTCATCACCCCGCCACTGCTGCTCTTACCTCCCCGCCCGCCCGCTCTATT
GCCACTGTTGTTGCCTCACCGCCCCGCCCCCGCTCTATTGCTGCTGTTGT
TATCTACCTCCCCACCGCTTCTCTCTTGCCGCTGTTGTTGCCTCACCGCC
CCGCCGCTCCCTTGCCACTGTTGTTATTTACCTCACCGCCCCGCCCCCGC
TCTTTTCCTCTCGGCACCGGCCGCGACTGACCGGACACGGAAAACCACGC
CACGCCATGCACAACACGGGTACGGCTGTGACCGGAACGGCGACGATAAA
CATCGACACCTTGACAAACTGCCGGCTATGTATCCCCCCCCCCCCCATCA
GCCGTTCGTGGAAGCTCCGGCGCTGCCTACACGCGATACGCAGCTGGACG
CGGAGGACTTCGCGCGCCGATGGGAGATGCTAGATGAGGCGTTCTCTCTC
GTGTCGACGGGTTTCGGGTATATGCCTTCAGAATTTTGTGCCGCCGGTGA
CTGATGGCCGACCGGAAAAGCGAGCAGCGGCCCGGGAGAGGGCCGCGACC
GCCCTCCCCCCGCGCCTTAAGGGGGAAGAGCCGCGTGCAGTGCTGCGACG
ACTTGCTTGTACTCTCGAGTTTCCTCTGTCCTCTTCATCACCCCGCCACT
GCTGCTCTTACCTCCCCGCCCGCCCGCTCTATTGCCACTGTTGTTGCCTC
ACCGCCCCGCCCCCGCTCTATTGCTGCTGTTGTTATCTACCTCCCCACCG
CTTCTCTCTTGCCGCTGTTGTTGCCTCACCGCCCCGCCGCTCCCTTGCCA
CTGTTGTTATTTACCTCACCGCCCCGCCCCCGCTCTTTTCCTCTCGGCAC
CGGCCGCGACTGACCGGACACGGAAAACCACGCCACGCCATGCACAACAC
GGGTACGGCTGTGACCGGAACGGCGACGATAAACATCGACACCTTGACAA
ACTGCCGGCTATGTATCCCCCCCCCCCCCATCAGCCGTTCGTGGAAGCTC
CGGCGCTGCCTACACGCGATACGCAGCTGGACGCGGAGGACTTCGCGCGC
CGATGGGAGATGCTAG
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