mRNA_L-elsbetiae_contig7234.16096.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7234.16096.1
Unique NamemRNA_L-elsbetiae_contig7234.16096.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7234.16096.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7234contigL-elsbetiae_contig7234:939..1804 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size276
Cds size162
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7234.16096.1prot_L-elsbetiae_contig7234.16096.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7234 939..1691 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816806.0241523-CDS-L-elsbetiae_contig7234:938..10981622816806.0241523-CDS-L-elsbetiae_contig7234:938..1098Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7234 939..1098 -
1691683827.2840602-CDS-L-elsbetiae_contig7234:938..10981691683827.2840602-CDS-L-elsbetiae_contig7234:938..1098Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7234 939..1098 -
1622816806.0351508-CDS-L-elsbetiae_contig7234:1689..16911622816806.0351508-CDS-L-elsbetiae_contig7234:1689..1691Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7234 1690..1691 -
1691683827.2939594-CDS-L-elsbetiae_contig7234:1689..16911691683827.2939594-CDS-L-elsbetiae_contig7234:1689..1691Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7234 1690..1691 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816806.0453315-UTR-L-elsbetiae_contig7234:1691..18041622816806.0453315-UTR-L-elsbetiae_contig7234:1691..1804Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7234 1692..1804 -
1691683827.3036268-UTR-L-elsbetiae_contig7234:1691..18041691683827.3036268-UTR-L-elsbetiae_contig7234:1691..1804Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7234 1692..1804 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7234.16096.1

>prot_L-elsbetiae_contig7234.16096.1 ID=prot_L-elsbetiae_contig7234.16096.1|Name=mRNA_L-elsbetiae_contig7234.16096.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=54bp
MPAETIGPEHLRNSLRLSALAGATACNACGAVAITRKSCGIGTASCGSLG
GLGG
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mRNA from alignment at L-elsbetiae_contig7234:939..1804-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7234.16096.1 ID=mRNA_L-elsbetiae_contig7234.16096.1|Name=mRNA_L-elsbetiae_contig7234.16096.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=866bp|location=Sequence derived from alignment at L-elsbetiae_contig7234:939..1804- (Laminarionema elsbetiae ELsaHSoW15)
CAGAGACGGAGAGAGGAAGCCGGTCAGGTGCTGTACCAAACGAGGCTTGG
TAAGACGAACCACACGATTCTACTGCGCACGTTCGTCCGACGGCCGGGAT
CAACTACATATGTATGTACGTACGTACGTACGCGGTGTCTCGATGTGTTC
CTGTGTTCTCCGGTCTCCGGTTTTTATTTCACGGTAGGATTTTTTGGGGG
GCTCAACTAAGTTTGCCGTCTACGTTAGTGTTAAGAAGCTCATAGACCCC
TTGCGTATCAGAAGCGACGGTGCAGAGAGAGAGGAGAGCGAGAGGAACAT
AAACACGTTAACACGTGGGAAAACCGGAGGCCTGTGAATCCCGCCGCATT
TCGGAATCCCGCCGCATTTCGGAATCCCCGGACGCCGGACGCCCGGATCC
CTGACCCCGCCGTATAAGGCGCCTTCTCTTTGTCTCTTCAGCGACACCCC
AGTGGGCTGACGCCCCCTGTGCTTGGGTGCGTTGTGCGTGATTCTGTTTT
TCACAGTTATGGTTATTTAGTTCCGAAGCGTTTCAAAAATAATCGATGGA
GCTCCTATTCGGAACGGGATTGCCGGTGTGGGGTGTGGGGCGGGCTTTTC
TGCAGCTACAATACGTAACGTGTGTGATGATATTTCCGTTGTACATCGAA
GTCGCTTACTCTCGTGTGCCCGCCGCCGCTATTCTTTCTTCGCGGGTTTG
TCACAGGCCGGCTGAAACGATCGGTCCAGAGCACCTTCGGAACTCGTTAC
GGTTGTCTGCTCTAGCGGGAGCGACTGCGTGCAATGCCTGCGGAGCAGTT
GCTATCACTCGAAAGTCATGCGGGATCGGGACAGCTTCTTGTGGATCGCT
TGGCGGTTTGGGTGGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7234:939..1804-

>mRNA_L-elsbetiae_contig7234.16096.1 ID=mRNA_L-elsbetiae_contig7234.16096.1|Name=mRNA_L-elsbetiae_contig7234.16096.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=324bp|location=Sequence derived from alignment at L-elsbetiae_contig7234:939..1804- (Laminarionema elsbetiae ELsaHSoW15)
ATATGCCGGCTGAAACGATCGGTCCAGAGCACCTTCGGAACTCGTTACGG
TTGTCTGCTCTAGCGGGAGCGACTGCGTGCAATGCCTGCGGAGCAGTTGC
TATCACTCGAAAGTCATGCGGGATCGGGACAGCTTCTTGTGGATCGCTTG
GCGGTTTGGGTGGGGCCGGCTGAAACGATCGGTCCAGAGCACCTTCGGAA
CTCGTTACGGTTGTCTGCTCTAGCGGGAGCGACTGCGTGCAATGCCTGCG
GAGCAGTTGCTATCACTCGAAAGTCATGCGGGATCGGGACAGCTTCTTGT
GGATCGCTTGGCGGTTTGGGTGGG
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