mRNA_L-elsbetiae_contig7221.16073.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_L-elsbetiae_contig7221.16073.1
Unique Name	mRNA_L-elsbetiae_contig7221.16073.1
Type	mRNA
Organism	Laminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)

Homology

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BLAST of mRNA_L-elsbetiae_contig7221.16073.1 vs. uniprot
Match: A0A6H5KAF5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAF5_9PHAE)

HSP 1 Score: 189 bits (481), Expect = 8.410e-59
Identity = 93/115 (80.87%), Postives = 102/115 (88.70%), Query Frame = 1

Query:    1 SLRFDVVTMCSTETTTFTKGYGKHAGRAGPVVLLTDDGERRVSEENLGRFPSGVDLGPNGREVRWFSDREMLRLHGFPEGFNFPKGLAQRQRCALIGNSVNVEVVALLLERLIFQ 345
            SLRFDVVT+ ST+TTTFTKGY KHAGRAGPVVLLTDDGERRVS E LGRFPSG+DL   G+EVRWFSDREMLRLHGFPE F+FP  L  RQRCAL+GNSVNVEVVALLLE ++F+
Sbjct:  100 SLRFDVVTLQSTKTTTFTKGYRKHAGRAGPVVLLTDDGERRVSGEKLGRFPSGLDLKTEGKEVRWFSDREMLRLHGFPEAFDFPTSLTLRQRCALVGNSVNVEVVALLLEFMLFE 214

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BLAST of mRNA_L-elsbetiae_contig7221.16073.1 vs. uniprot
Match: D7G6U6_ECTSI (Cytosine-C5 specific DNA methyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6U6_ECTSI)

HSP 1 Score: 195 bits (495), Expect = 8.470e-59
Identity = 95/115 (82.61%), Postives = 103/115 (89.57%), Query Frame = 1

Query:    1 SLRFDVVTMCSTETTTFTKGYGKHAGRAGPVVLLTDDGERRVSEENLGRFPSGVDLGPNGREVRWFSDREMLRLHGFPEGFNFPKGLAQRQRCALIGNSVNVEVVALLLERLIFQ 345
            SLRFDVVT+ STETTTFTKGY KHAGRAGPVVLLTDDGERRVS E LGRFPSG+DLGP G+EVRWFSD EMLRLHGFPE F+FP  L  RQRCAL+GNSVNVEVVALLLE ++F+
Sbjct:  277 SLRFDVVTLQSTETTTFTKGYRKHAGRAGPVVLLTDDGERRVSGEKLGRFPSGLDLGPEGKEVRWFSDGEMLRLHGFPEAFDFPTALTPRQRCALVGNSVNVEVVALLLEFMLFE 391

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BLAST of mRNA_L-elsbetiae_contig7221.16073.1 vs. uniprot
Match: D7G6U4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6U4_ECTSI)

HSP 1 Score: 135 bits (340), Expect = 2.740e-39
Identity = 62/70 (88.57%), Postives = 65/70 (92.86%), Query Frame = 1

Query:   40 TTTFTKGYGKHAGRAGPVVLLTDDGERRVSEENLGRFPSGVDLGPNGREVRWFSDREMLRLHGFPEGFNF 249
            TTTFTKGY KHAGRAGPVVLLTDDGERRVSEE LG FPSG+DLGP G+EVRWFSDREMLRLHGFPE F+F
Sbjct:   11 TTTFTKGYRKHAGRAGPVVLLTDDGERRVSEEELGPFPSGLDLGPEGKEVRWFSDREMLRLHGFPEAFDF 80

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BLAST of mRNA_L-elsbetiae_contig7221.16073.1 vs. uniprot
Match: A0A835YUF4_9STRA (S-adenosyl-L-methionine-dependent methyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUF4_9STRA)

HSP 1 Score: 92.8 bits (229), Expect = 3.290e-21
Identity = 55/111 (49.55%), Postives = 71/111 (63.96%), Query Frame = 1

Query:   13 DVVTMCSTETTTFTKGYGKHAGRAGPVVLLTDDGERRVSEENLGRFPSGVDLGPNGREVRWFSDREMLRLHGFPEGFNFPKGLAQRQRCALIGNSVNVEVVALLLERLIFQ 345
            DV T  ST T TFTKGYG+  G+AGP +LL++DG   V+ E  GR       G  G+++R+F+ REMLR+ GFPE F F  G + R    LIGNS+NV VV+ LL  L+ Q
Sbjct:   91 DVATAASTATITFTKGYGRQIGKAGPYLLLSEDG---VTVEWGGRARFSFVEG--GQKLRYFTPREMLRVAGFPESFVFSPGTSNRAAYKLIGNSINVTVVSRLLSWLLAQ 196

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BLAST of mRNA_L-elsbetiae_contig7221.16073.1 vs. uniprot
Match: A0A812KQL3_9DINO (Trdmt1 protein (Fragment) n=1 Tax=Symbiodinium necroappetens TaxID=1628268 RepID=A0A812KQL3_9DINO)

HSP 1 Score: 77.4 bits (189), Expect = 3.840e-15
Identity = 56/125 (44.80%), Postives = 72/125 (57.60%), Query Frame = 1

Query:    1 SLRFDVVTMCSTETTTFTKGYGK---HAGRAGPVVLLTD--DGERRVSEENLGR---FPSG--VDLGPNGREVRWFSDREMLRLHGFPEGFNFPKGLAQRQRCALIGNSVNVEVVALLLERLIFQ 345
            S R++VVT  ST ++TFT GY      A R GP++   D   G+   SEE   R    P G    L   G  VR+F+ RE+L++ GFP  F FP  +  RQR  LIG+SVNV+VVA LL  LIF+
Sbjct:   75 SQRWEVVTPASTSSSTFTAGYTTACFEAHRFGPLLAKDDAFPGDSDDSEEAWCRPVLLPGGRVKRLVMPGEPVRYFTPRELLQIAGFPCSFCFPSTITPRQRYKLIGDSVNVDVVAKLLHFLIFE 199

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BLAST of mRNA_L-elsbetiae_contig7221.16073.1 vs. uniprot
Match: U6LP13_9EIME (DNA methyltransferase 2, putative n=1 Tax=Eimeria brunetti TaxID=51314 RepID=U6LP13_9EIME)

HSP 1 Score: 77.8 bits (190), Expect = 2.270e-14
Identity = 37/56 (66.07%), Postives = 45/56 (80.36%), Query Frame = 1

Query:  178 GREVRWFSDREMLRLHGFPEGFNFPKGLAQRQRCALIGNSVNVEVVALLLERLIFQ 345
            G  VR+FS RE+LRLHGFPE F+FP  L  R+R AL+GNSVNV+VVALLL+ L+ Q
Sbjct:  512 GETVRFFSSRELLRLHGFPESFSFPPSLPFRKRAALVGNSVNVKVVALLLQHLLLQ 567

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BLAST of mRNA_L-elsbetiae_contig7221.16073.1 vs. uniprot
Match: A0A812Q545_SYMMI (TRDMT1 protein n=3 Tax=Symbiodinium TaxID=2949 RepID=A0A812Q545_SYMMI)

HSP 1 Score: 77.4 bits (189), Expect = 2.950e-14
Identity = 56/125 (44.80%), Postives = 72/125 (57.60%), Query Frame = 1

Query:    1 SLRFDVVTMCSTETTTFTKGYGK---HAGRAGPVVLLTD--DGERRVSEENLGR---FPSG--VDLGPNGREVRWFSDREMLRLHGFPEGFNFPKGLAQRQRCALIGNSVNVEVVALLLERLIFQ 345
            S R++VVT  ST ++TFT GY      A R GP++   D   G+   SEE   R    P G    L   G  VR+F+ RE+L++ GFP  F FP  +  RQR  LIG+SVNV+VVA LL  LIF+
Sbjct:  341 SQRWEVVTPASTSSSTFTAGYTTACFEAHRFGPLLAKDDAFPGDSDDSEEAWCRPVLLPGGRVKRLVMPGEPVRYFTPRELLQIAGFPCSFCFPSTITPRQRYKLIGDSVNVDVVAKLLHFLIFE 465

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BLAST of mRNA_L-elsbetiae_contig7221.16073.1 vs. uniprot
Match: A0A1Q9DHF6_SYMMI (Neurofilament heavy polypeptide n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A1Q9DHF6_SYMMI)

HSP 1 Score: 77.4 bits (189), Expect = 3.370e-14
Identity = 56/125 (44.80%), Postives = 72/125 (57.60%), Query Frame = 1

Query:    1 SLRFDVVTMCSTETTTFTKGYGK---HAGRAGPVVLLTD--DGERRVSEENLGR---FPSG--VDLGPNGREVRWFSDREMLRLHGFPEGFNFPKGLAQRQRCALIGNSVNVEVVALLLERLIFQ 345
            S R++VVT  ST ++TFT GY      A R GP++   D   G+   SEE   R    P G    L   G  VR+F+ RE+L++ GFP  F FP  +  RQR  LIG+SVNV+VVA LL  LIF+
Sbjct: 1886 SQRWEVVTPASTSSSTFTAGYTTACFEAHRFGPLLAKDDAFPGDSDDSEEAWCRPVLLPGGRVKRLVMPGEPVRYFTPRELLQIAGFPCSFCFPSTITPRQRYKLIGDSVNVDVVAKLLHFLIFE 2010

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BLAST of mRNA_L-elsbetiae_contig7221.16073.1 vs. uniprot
Match: U6M7M6_EIMMA (DNA methyltransferase 2, putative n=1 Tax=Eimeria maxima TaxID=5804 RepID=U6M7M6_EIMMA)

HSP 1 Score: 75.9 bits (185), Expect = 1.070e-13
Identity = 37/56 (66.07%), Postives = 44/56 (78.57%), Query Frame = 1

Query:  178 GREVRWFSDREMLRLHGFPEGFNFPKGLAQRQRCALIGNSVNVEVVALLLERLIFQ 345
            G  +R+FS RE+LRLHGFPE F FP  L  R+R AL+GNSVNV+VVALLLE L+ Q
Sbjct:  493 GETIRFFSSRELLRLHGFPESFAFPSSLPFRKRAALVGNSVNVKVVALLLEYLLQQ 548

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BLAST of mRNA_L-elsbetiae_contig7221.16073.1 vs. uniprot
Match: U6GUM7_EIMAC (DNA methyltransferase 2, putative n=1 Tax=Eimeria acervulina TaxID=5801 RepID=U6GUM7_EIMAC)

HSP 1 Score: 75.9 bits (185), Expect = 1.070e-13
Identity = 36/56 (64.29%), Postives = 45/56 (80.36%), Query Frame = 1

Query:  178 GREVRWFSDREMLRLHGFPEGFNFPKGLAQRQRCALIGNSVNVEVVALLLERLIFQ 345
            G  +R+FS RE+LRLHGFPE F FP  L+ R+R AL+GNSVNV+VVALLL+ L+ Q
Sbjct:  500 GETIRFFSSRELLRLHGFPESFAFPPSLSFRKRAALVGNSVNVKVVALLLQHLLQQ 555

The following BLAST results are available for this feature:

BLAST of mRNA_L-elsbetiae_contig7221.16073.1 vs. uniprot

BLAST of mRNA_L-elsbetiae_contig7221.16073.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5KAF5_9PHAE	8.410e-59	80.87	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
D7G6U6_ECTSI	8.470e-59	82.61	Cytosine-C5 specific DNA methyltransferase n=1 Tax...	[more]
D7G6U4_ECTSI	2.740e-39	88.57	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
A0A835YUF4_9STRA	3.290e-21	49.55	S-adenosyl-L-methionine-dependent methyltransferas...	[more]
A0A812KQL3_9DINO	3.840e-15	44.80	Trdmt1 protein (Fragment) n=1 Tax=Symbiodinium nec...	[more]
U6LP13_9EIME	2.270e-14	66.07	DNA methyltransferase 2, putative n=1 Tax=Eimeria ...	[more]
A0A812Q545_SYMMI	2.950e-14	44.80	TRDMT1 protein n=3 Tax=Symbiodinium TaxID=2949 Rep...	[more]
A0A1Q9DHF6_SYMMI	3.370e-14	44.80	Neurofilament heavy polypeptide n=1 Tax=Symbiodini...	[more]
U6M7M6_EIMMA	1.070e-13	66.07	DNA methyltransferase 2, putative n=1 Tax=Eimeria ...	[more]
U6GUM7_EIMAC	1.070e-13	64.29	DNA methyltransferase 2, putative n=1 Tax=Eimeria ...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
L-elsbetiae_contig7221	contig	L-elsbetiae_contig7221:560..904 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW15	2021-02-24

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Seed ortholog score	185.3
Seed ortholog evalue	1.5e-44
Seed eggNOG ortholog	2880.D7G6U6
KEGG rclass	RC00003,RC00332
KEGG ko	ko:K00558,ko:K15336
KEGG Reaction	R04858
KEGG Pathway	ko00270,ko01100,ko05206,map00270,map01100,map05206
KEGG Module	M00035
Hectar predicted targeting category	other localisation
EggNOG free text desc.	tRNA methyltransferase activity
EggNOG OGs	COG0270@1,KOG0919@2759
Ec32 ortholog description	tRNA (cytosine-5-)-methyltransferase
Ec32 ortholog	Ec-01_012190.1
EC	2.1.1.204,2.1.1.37
COG Functional cat.	L
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
BRITE	ko00000,ko00001,ko00002,ko01000,ko02048,ko03016,ko03032,ko03036
Exons	1
Model size	345
Cds size	321
Stop	0
Start	1

Relationships

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622816804.1341298-UTR-L-elsbetiae_contig7221:559..583	1622816804.1341298-UTR-L-elsbetiae_contig7221:559..583	Laminarionema elsbetiae ELsaHSoW15	UTR	L-elsbetiae_contig7221 560..583 +
1691683825.9257889-UTR-L-elsbetiae_contig7221:559..583	1691683825.9257889-UTR-L-elsbetiae_contig7221:559..583	Laminarionema elsbetiae ELsaHSoW15	UTR	L-elsbetiae_contig7221 560..583 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622816804.1488154-CDS-L-elsbetiae_contig7221:583..904	1622816804.1488154-CDS-L-elsbetiae_contig7221:583..904	Laminarionema elsbetiae ELsaHSoW15	CDS	L-elsbetiae_contig7221 584..904 +
1691683825.938784-CDS-L-elsbetiae_contig7221:583..904	1691683825.938784-CDS-L-elsbetiae_contig7221:583..904	Laminarionema elsbetiae ELsaHSoW15	CDS	L-elsbetiae_contig7221 584..904 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_L-elsbetiae_contig7221.16073.1	prot_L-elsbetiae_contig7221.16073.1	Laminarionema elsbetiae ELsaHSoW15	polypeptide	L-elsbetiae_contig7221 584..904 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at L-elsbetiae_contig7221:560..904+
coding sequence from alignment at L-elsbetiae_contig7221:560..904+

protein sequence of mRNA_L-elsbetiae_contig7221.16073.1

>prot_L-elsbetiae_contig7221.16073.1 ID=prot_L-elsbetiae_contig7221.16073.1|Name=mRNA_L-elsbetiae_contig7221.16073.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=107bp
MCSTETTTFTKGYGKHAGRAGPVVLLTDDGERRVSEENLGRFPSGVDLGP
NGREVRWFSDREMLRLHGFPEGFNFPKGLAQRQRCALIGNSVNVEVVALL
LERLIFQ

mRNA from alignment at L-elsbetiae_contig7221:560..904+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_L-elsbetiae_contig7221.16073.1 ID=mRNA_L-elsbetiae_contig7221.16073.1|Name=mRNA_L-elsbetiae_contig7221.16073.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=345bp|location=Sequence derived from alignment at L-elsbetiae_contig7221:560..904+ (Laminarionema elsbetiae ELsaHSoW15)
TCCCTCCGGTTTGACGTGGTGACCATGTGCTCAACCGAGACCACGACCTT
CACCAAAGGCTACGGCAAGCACGCCGGACGCGCGGGGCCGGTGGTGCTGT
TGACAGACGATGGCGAACGGCGTGTGAGCGAGGAAAACCTCGGACGCTTC
CCATCCGGGGTGGACCTTGGGCCCAATGGGAGGGAGGTGCGGTGGTTCTC
GGACCGAGAGATGCTCCGCTTGCACGGCTTTCCCGAGGGATTCAACTTCC
CCAAGGGCTTGGCCCAGCGACAGCGATGTGCGCTGATCGGGAACAGCGTG
AACGTTGAGGTGGTGGCACTGCTGCTTGAGAGGCTGATTTTCCAA

Coding sequence (CDS) from alignment at L-elsbetiae_contig7221:560..904+

>mRNA_L-elsbetiae_contig7221.16073.1 ID=mRNA_L-elsbetiae_contig7221.16073.1|Name=mRNA_L-elsbetiae_contig7221.16073.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=642bp|location=Sequence derived from alignment at L-elsbetiae_contig7221:560..904+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTGCTCAACCGAGACCACGACCTTCACCAAAGGCTACGGCAAGCACGC
CGGACGCGCGGGGCCGGTGGTGCTGTTGACAGACGATGGCGAACGGCGTG
TGAGCGAGGAAAACCTCGGACGCTTCCCATCCGGGGTGGACCTTGGGCCC
AATGGGAGGGAGGTGCGGTGGTTCTCGGACCGAGAGATGCTCCGCTTGCA
CGGCTTTCCCGAGGGATTCAACTTCCCCAAGGGCTTGGCCCAGCGACAGC
GATGTGCGCTGATCGGGAACAGCGTGAACGTTGAGGTGGTGGCACTGCTG
CTTGAGAGGCTGATTTTCCAAATGTGCTCAACCGAGACCACGACCTTCAC
CAAAGGCTACGGCAAGCACGCCGGACGCGCGGGGCCGGTGGTGCTGTTGA
CAGACGATGGCGAACGGCGTGTGAGCGAGGAAAACCTCGGACGCTTCCCA
TCCGGGGTGGACCTTGGGCCCAATGGGAGGGAGGTGCGGTGGTTCTCGGA
CCGAGAGATGCTCCGCTTGCACGGCTTTCCCGAGGGATTCAACTTCCCCA
AGGGCTTGGCCCAGCGACAGCGATGTGCGCTGATCGGGAACAGCGTGAAC
GTTGAGGTGGTGGCACTGCTGCTTGAGAGGCTGATTTTCCAA