mRNA_L-elsbetiae_contig72.16039.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig72.16039.1 vs. uniprot
Match: D7FTY6_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTY6_ECTSI) HSP 1 Score: 388 bits (996), Expect = 1.220e-126 Identity = 231/295 (78.31%), Postives = 262/295 (88.81%), Query Frame = 1 Query: 406 MASLHGVIETKDDAVQRLRRESDRLHREIKRLHVEGEEHKGQENAMIVAATQNSRLLKLLEQEELKREEVLSERDEALAQVTELKHRVRTSDERHAKRTSGLEVKLIKAIGENLTLREKCSGTDKRIQTLENELECCRKQALFDKETAQAALSTLRQSQYEALSQLQESRDELQRTKDQAETNGEELEVCRQQSAELEMRLQT--ADLGSVERALSQREAAADEDSSIAQARLSKELSLSESLHNKVASMSRTILRLVERHKELQAEVGKRKAEEARLKDQIDQAGQRELQLQQK 1284 M SLHGVIETKD+AVQ+ +RESDRL REIKRLHVE EE +GQENAMIVAATQNSRLLKLLEQEELKRE VL+ERDEALA+V+ELKHRVRTSDE+HAKRTSGLEVKLIKAIGENL L+EK S TD++I+TL ELE RKQA FDKETA+ ALSTLRQSQY +S+LQESRDELQR KDQAET G+EL VCRQQ+AELEMRL T +DL S+ER S+REAAADEDS +AQARL KE+SLSESLHNKVASMSRTILRLVERHK+L+A+V K +AEEARL DQI++A +RE++ QQK Sbjct: 1 MGSLHGVIETKDNAVQKHKRESDRLRREIKRLHVEREERQGQENAMIVAATQNSRLLKLLEQEELKRESVLTERDEALAEVSELKHRVRTSDEQHAKRTSGLEVKLIKAIGENLALKEKYSSTDEKIETLTKELESARKQAKFDKETAETALSTLRQSQYRVISELQESRDELQRYKDQAETKGDELAVCRQQNAELEMRLGTLQSDLNSMERTSSEREAAADEDSRLAQARLEKEISLSESLHNKVASMSRTILRLVERHKDLKAQVVKHEAEEARLGDQIEEARKREVRFQQK 295
BLAST of mRNA_L-elsbetiae_contig72.16039.1 vs. uniprot
Match: A0A835Z915_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z915_9STRA) HSP 1 Score: 104 bits (260), Expect = 2.190e-20 Identity = 68/165 (41.21%), Postives = 109/165 (66.06%), Query Frame = 1 Query: 277 TKEETLHLIKLRDEMISAKHQEVLLLSRQNQGLREGIDAVEKEMASLHGVIETKDDAVQRLRRESDRLHREIKRLHVEGEEHKGQENAMIVAATQNSRLLKLLEQEELKREEVLSERDEALAQVTELKHRVRTSDERHAKRTSGLEVKLIKAIGENLTLREKCSG 771 +K + L L+++RD M+ AK +EV L++ QN LR+ +A E EMA+L ++ K+ A+ R+ S+R R +KRL E E + G+E A+ ++A Q++RLLKLLEQEE+KRE +L E+D A+++V ELK RV + HA++ L+++L KA+ + E +G Sbjct: 35 SKVQLLRLLRVRDGMLEAKQKEVSLVAHQNGLLRDQTNAAEAEMAALQLTLKEKEQALSAERKVSERAGRAVKRLQNEMEHYLGREQAIHMSAAQSTRLLKLLEQEEIKREHLLREKDAAVSEVGELKARVAALTKTHAEQEVDLQLRLAKALRDLAATNEHHAG 199 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig72.16039.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig72.16039.1 >prot_L-elsbetiae_contig72.16039.1 ID=prot_L-elsbetiae_contig72.16039.1|Name=mRNA_L-elsbetiae_contig72.16039.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=435bp GSGDEEESIEGSVESMTDESASTLRAPDSDSSSIATRYSAAGRADSVASTback to top mRNA from alignment at L-elsbetiae_contig72:49760..54866- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig72.16039.1 ID=mRNA_L-elsbetiae_contig72.16039.1|Name=mRNA_L-elsbetiae_contig72.16039.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=5107bp|location=Sequence derived from alignment at L-elsbetiae_contig72:49760..54866- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig72:49760..54866- >mRNA_L-elsbetiae_contig72.16039.1 ID=mRNA_L-elsbetiae_contig72.16039.1|Name=mRNA_L-elsbetiae_contig72.16039.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2610bp|location=Sequence derived from alignment at L-elsbetiae_contig72:49760..54866- (Laminarionema elsbetiae ELsaHSoW15)back to top |