mRNA_L-elsbetiae_contig7187.16023.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7187.16023.1
Unique NamemRNA_L-elsbetiae_contig7187.16023.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7187.16023.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7187contigL-elsbetiae_contig7187:2389..7105 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons5
Model size1018
Cds size1017
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7187.16023.1prot_L-elsbetiae_contig7187.16023.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7187 2390..7105 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816799.0699546-CDS-L-elsbetiae_contig7187:2389..24701622816799.0699546-CDS-L-elsbetiae_contig7187:2389..2470Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7187 2390..2470 -
1691683822.0838242-CDS-L-elsbetiae_contig7187:2389..24701691683822.0838242-CDS-L-elsbetiae_contig7187:2389..2470Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7187 2390..2470 -
1622816799.0821593-CDS-L-elsbetiae_contig7187:3299..37331622816799.0821593-CDS-L-elsbetiae_contig7187:3299..3733Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7187 3300..3733 -
1691683822.0977345-CDS-L-elsbetiae_contig7187:3299..37331691683822.0977345-CDS-L-elsbetiae_contig7187:3299..3733Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7187 3300..3733 -
1622816799.0934057-CDS-L-elsbetiae_contig7187:4627..48131622816799.0934057-CDS-L-elsbetiae_contig7187:4627..4813Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7187 4628..4813 -
1691683822.1101367-CDS-L-elsbetiae_contig7187:4627..48131691683822.1101367-CDS-L-elsbetiae_contig7187:4627..4813Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7187 4628..4813 -
1622816799.106908-CDS-L-elsbetiae_contig7187:6402..65461622816799.106908-CDS-L-elsbetiae_contig7187:6402..6546Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7187 6403..6546 -
1691683822.1217177-CDS-L-elsbetiae_contig7187:6402..65461691683822.1217177-CDS-L-elsbetiae_contig7187:6402..6546Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7187 6403..6546 -
1622816799.1181164-CDS-L-elsbetiae_contig7187:6933..71051622816799.1181164-CDS-L-elsbetiae_contig7187:6933..7105Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7187 6934..7105 -
1691683822.1328323-CDS-L-elsbetiae_contig7187:6933..71051691683822.1328323-CDS-L-elsbetiae_contig7187:6933..7105Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7187 6934..7105 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7187.16023.1

>prot_L-elsbetiae_contig7187.16023.1 ID=prot_L-elsbetiae_contig7187.16023.1|Name=mRNA_L-elsbetiae_contig7187.16023.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=339bp
VAETVEEPVEVEAAPEPSASGEEATEPVVVADVETTEADAVEEEPTTAAV
GESGDDVALVDEATGNVVEEAQAEAAEDGERAMPEVAANAVVAAADPADD
ETAAAAPAETVASAEAAEEGGEEPVDEPASEPVVAAPVEEEVESVEEEPT
VTAVEEDIANTDADAGAAPAQEGAQAEGTETPAVESAEDPAAEPVDGAAA
EPTAGEEEATEPAVAAAAVEEAADAAEGDVADAAAPAPKQGGGGGFGILK
KWLKNAKKPVSLKKLKGKRSKIPAALSSSKPAAGEEGAPEDEEEEEGEEG
SEDVSTEEAEPEVRSGGSAAPVAASRWPWLIRAILIEPW
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mRNA from alignment at L-elsbetiae_contig7187:2389..7105-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7187.16023.1 ID=mRNA_L-elsbetiae_contig7187.16023.1|Name=mRNA_L-elsbetiae_contig7187.16023.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4717bp|location=Sequence derived from alignment at L-elsbetiae_contig7187:2389..7105- (Laminarionema elsbetiae ELsaHSoW15)
GTCGCAGAGACTGTCGAAGAGCCTGTCGAAGTTGAGGCTGCGCCTGAACC
TTCCGCAAGCGGAGAAGAAGCGACGGAGCCCGTCGTTGTCGCTGATGTGG
AAACTACTGAAGCGGATGCCGTGGAGGAAGAGCCGACGACCGCCGCTGTC
GGGGAAAGCGGCGATGATGTTGGTGAGTCTGTCACCAGCACGTTCAGTTG
GTCTGACTTTTGGAATAGGCTGTGGCGGCGGGGTAGGGATGCTTGACCAG
TTTTTTGGAATCGGTGCCGCGTCTGTGAGTGATTGGCGCTTGGGCGGACG
CTCTCAACGACCATGCCGGCTTGATGTGAAGATAATGTGGGATATCGCTC
TTGTTGCAGCCTTCCACACCTGTTGTGTTGAGTGTGCGCTGTATAGGTTG
CTGCCGCTTTCATTCCGGCAAGAGTCGCTGCTGTGCTGTTGTCGTTATTT
AGTGGAATCCACAATGTAGTGCACATCAACACATACAAATGAGACCAAGC
CGTTTTACCCAGTCTTGCGCGTGTGTTGGTCCAACTCCCGCTCTTTGCCG
CCTTGGCAGCTCTGGTGGATGAAGCGACCGGGAACGTTGTCGAAGAGGCT
CAAGCCGAGGCGGCGGAGGACGGTGAGCGCGCCATGCCCGAGGTCGCTGC
AAATGCTGTTGTCGCCGCTGCCGACCCAGCTGACGACGAGACTGCTGCAG
CCGGTGAGTGCTCGAAAGCGACATCTGTCGTTCGCGGGCAATATCCGGCA
AAAGAAACGCTGACACAAAATCTTGTTTTGCTTGGGTCTTTCGACCGCAG
TTGAAATTGCTCGGTACGGTTGACACAGTTTTATGCTGACTGACCCCCAA
TTGCGGCACGAGAAGTAGCGAGACTCGAAAAAGGACCCAGCCAAACGAAA
AGTTTCCGTGTCGATACGTTGGTCGTCGAATCGCGCCGAAAGCTCCTCTC
AGGCACACCACGACGTTTTCAAGAAGGAGCGGCAAGTAGCGGCGGTGCAT
TTCATGCCGCAGCTTCCCACAACGTCCAAAAAACAAGTGCCGACGGAGAA
AACTCTCACTACATCCCAGATCAGCTCTTGCCCTGGACCATATATCCATG
CTGTCACCTCCACAAATGTATCTCATCTGGGTGGGCGGGGGTTGGCTGTG
GGCGCCTTCAGTCGGCGGCAAATCACGTCGCCGGGGACATGAGTACAGAG
TATGTACGTTACTTGTTCGTTTCCCCGCTGAAAAAAGAACACACGACACA
CTCATCGTGACTCCACTGCCCACGCCCACCCGGATGAGACACGTTTGTTT
ATGGCGGTGACCTTAGCAGCCATAAAGGTGTCACATGAATAAATGGTCTA
GCGGGCGAGAGCTGGACTGCGATATGCCTTTCGCCAGACACCCTGCACAA
ACGTTTTTTCCCACACGACTGACTCCGGGCTCCTGCCATCCATACACAAG
ACACAAGCAGGCTGGTACGTTGACGCGAATGCTTTAGGGTTATTCGGAGC
AGTTTACAAAGTCGTCACGTTCAATATTGAGGGCGGTCAATGCTGGTGGC
GAGAGTCTACAGGAGAAAGGATCTCGCAGCCTCATCTAAAGATTTTGGCT
TGCTGCCAGATGATCAAAGCTTTGCCAAACAATTGCTCGAAAGCCAAACA
TTTTGCCGGAAATCAAATCTCGGGGCAAGTTTTTTTTTTAAGACTTTCTC
CCATAAGCAGACGAAATACAAATCTTGCTCTTGCTTAAAGCTCAAAGATT
TTTGTGAAATATTACGCTTTCATAAACACGGGTGTAAGATGATACATTAA
GATGCTTCATTAGGATTCTACACCAATATGATACACCAGACACGCCATTG
GGTTTGGCCCAGTCGCTTAACTCGTTCATGTCCCCGACCCATAGACTCCG
GGGGGGGGGGGTAAATCCCAGTGGGTTCCTTTTTCCTCTCCAGGCTACTT
CCGCGGCCAGTGGTACTAAACGGCGATGTACGGACGTGAAAAGCGTACAT
GTATTGCCCCGTTATTTTCTTCCCCGTCGTACATATGAGTTTTGCATCCT
ATCGCTCGCCTTTACTTTGAGCTCTTTGAGCCCTTTACCCCATGCTCAGC
TCATCGAAAGTGTTGGGAAGGCCACTGAGACGCCACGACGAGATCAGGTT
TTAAGAAGGCGTCGGGTTTCCGATATTTGTTGCGGGTGGATGTGTCTCTC
CCTGACCGAACTGCTTTCTACCTGGTGCCGATTTATCTTGCCGTCCTCCT
TGACAACATTTACCCCCCCTTTCCAACACAACCGTCTTGCAGCTCCCGCG
GAGACGGTCGCGTCGGCGGAGGCTGCCGAAGAAGGTGGCGAAGAGCCTGT
CGACGAGCCGGCCAGTGAGCCTGTAGTCGCCGCTCCTGTGGAAGAAGAGG
TGGAAAGTGTCGAGGAGGAGCCGACGGTCACCGCCGTTGAGGAAGACATC
GCTAACACTGATGCTGATGCTGGTGCTGGTGAGTGGATCGCGGACGATTG
GCGTTTGGCTGCGGGATTAGCTCCGCGTAAATGTGGGTTTCCGACGTTAC
CCCCAAACTGGCGAGAAAATTGCGGATGCTGAAGAGTGAACCGTCTGGAG
AGTGTAGATAAGTAGCAGTGGCTGTCAAATGCTGGGGGGCTTTTGCGTGT
TGACCAGGCATTCGTGCGTGCTGGTGCGAGCGGTGGTGCAGGTGTTGTGT
GCTTTCGGTTTTCCTGAGAGTGACCGCAAGAGAAGGTCTTGTTTCGAAGC
GTGGCGCTTTTTGCGGCAAGCCCCAGGGTTGACCCCCGCGTTTTGGTCCT
TTGAAACTAGTCGCCCTTCTTTGCCCGCCCGCCTGCGGTGCGGACACGCG
CGGAGTGCAGATCAATCGTGACTTCGTGGTACTTCTCCTGTCCCGCCCAA
AACCCACACCCCTATCGTTTTCATAGGTACATGCATCATAATCGTCGAAC
ATTAAATACGCTCGCTGATCGATTGCCGTTGTCAAGCAGTTCTATCCGAA
GAAAAACGGCATGCTCTACTTCATAGACCAACACATCAACATTAAACCAC
ATGCTGGTGGCGTGTCTTGCGAGGCAGCCTCGTGGTCTGCGATGGTGTCT
TTCTAGGCCCTCTTTGGCGTGTAGCACGTGCGGTATGCAGCTCGTCGTGT
TTAGACTCCAGCCGTCTTCCACCCCGCCGCGGGTCACGAAGCCAACTCAC
TGATCCGATGGCGTCATGAAAGTTCATCTCTTAACATTTGTTTTTTTGTT
TCTCTCTCTCTCTCGCTCTCTCTCTGCTGGCTCGCTCGCTCGCTTATGCC
TCTGTTTCGCACTTATTCCGCATTCACATTTTCATTCTTGTCTCTCATGC
CTTTGCCCGTACTTGTGCCCAGCCCCCGCACAGGAAGGCGCGCAGGCTGA
GGGCACCGAGACCCCCGCCGTCGAGTCGGCTGAGGACCCTGCCGCTGAGC
CTGTTGATGGTGCTGCTGCTGAGCCTACCGCAGGCGAGGAAGAAGCCACC
GAGCCCGCCGTTGCTGCGGCGGCGGTGGAAGAAGCAGCAGACGCTGCGGA
GGGAGACGTTGCTGATGCCGCAGCCCCAGCGCCCAAGCAGGGCGGCGGCG
GTGGGTTCGGGATCCTCAAGAAGTGGCTCAAGAACGCAAAGAAGCCGGTT
TCCTTGAAGAAGCTCAAAGGAAAACGCTCCAAGATCCCTGCCGCGCTTTC
TTCCTCCAAGCCCGCGGCCGGGGAAGAGGGGGCCCCGGAAGATGAGGAGG
AGGAGGAGGGGGAGGAGGGAAGCGAGGACGTTTCTACTGAAGAGGCCGAA
CCCGAGGTGATTCCCGGAGTTGTTACTGCCGCCGGGGGCGCCGCAGACGA
GCCTGTGACCCTTGACGGGGAGGGGGTGGCTGCGGTGGAATCTCACGACC
GTCGCATGAGCGAATAATTTTTCGTGCGGTTGCTGACTTAACTGAGCCTG
GTGTCCCATGAATACGGCACGGGGCGGTTTTGTGGTGGGCGCTAAGGAAT
GGCCACTGTTTTTTTTTGAGTTGGGAGTTTGATGATAGGGTTCAGCTTTG
GGGCCCGTTTGACTCGGAACTCTCTGGGGGCATTGGGTTCGTCTGGTCCT
AGGCACGTCATGGTTGGGTTAGGGCTAGGGTTACTCACGTCGCACCTTGT
TTCGCTTTTGCGGACCATGAAAGATACCAGCATGAAGGTATTCAAGATGG
ACAACCTAGTCGGGACGAATGGGGTGGTTGTTTTTGGAGTGGAATGCCTC
ACCGCTGATTGTCGATCCGTTTTCGCCTCTTCAAGGGAGCCATAACACGA
ACCAGAGTTGAACAACCCGCCGGCGTGTTCTTCTGTTTCGCTTTTATTTT
TTATTTTTTATTTTTTATTATGGTGGGGTGAGATATTGGTTTTGGAAAGT
TTGTTTGAAGGCGTACACGTTTTATGTATATACCGTTGCGAAGATCTCCG
CGCGCACACGTTCTCCGGTATTTTTTTCTTTTCTTTCCGCACCGTTCGTA
CCGCATCGACCTCCGAATCCCCACGGCAAAACCCGGCCAATTCAGGGTGC
GTATAGAGTAGGCGAGGGACAGAACCGACGCCCCGCTGCTGCCGCTGCGC
CATGCCGTGCCATCACATGCATGCCCTGTCCGCAGGTGCGTTCTGGCGGC
AGCGCAGCACCAGTGGCGGCGTCGAGGTGGCCGTGGTTGATTCGCGCAAT
TTTGATCGAACCTTGGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7187:2389..7105-

>mRNA_L-elsbetiae_contig7187.16023.1 ID=mRNA_L-elsbetiae_contig7187.16023.1|Name=mRNA_L-elsbetiae_contig7187.16023.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2034bp|location=Sequence derived from alignment at L-elsbetiae_contig7187:2389..7105- (Laminarionema elsbetiae ELsaHSoW15)
GTCGCAGAGACTGTCGAAGAGCCTGTCGAAGTTGAGGCTGCGCCTGAACC
TTCCGCAAGCGGAGAAGAAGCGACGGAGCCCGTCGTTGTCGCTGATGTGG
AAACTACTGAAGCGGATGCCGTGGAGGAAGAGCCGACGACCGCCGCTGTC
GGGGAAAGCGGCGATGATGTTGGTCGCAGAGACTGTCGAAGAGCCTGTCG
AAGTTGAGGCTGCGCCTGAACCTTCCGCAAGCGGAGAAGAAGCGACGGAG
CCCGTCGTTGTCGCTGATGTGGAAACTACTGAAGCGGATGCCGTGGAGGA
AGAGCCGACGACCGCCGCTGTCGGGGAAAGCGGCGATGATGTTGCTCTGG
TGGATGAAGCGACCGGGAACGTTGTCGAAGAGGCTCAAGCCGAGGCGGCG
GAGGACGGTGAGCGCGCCATGCCCGAGGTCGCTGCAAATGCTGTTGTCGC
CGCTGCCGACCCAGCTGACGACGAGACTGCTGCAGCCGCTCTGGTGGATG
AAGCGACCGGGAACGTTGTCGAAGAGGCTCAAGCCGAGGCGGCGGAGGAC
GGTGAGCGCGCCATGCCCGAGGTCGCTGCAAATGCTGTTGTCGCCGCTGC
CGACCCAGCTGACGACGAGACTGCTGCAGCCGCTCCCGCGGAGACGGTCG
CGTCGGCGGAGGCTGCCGAAGAAGGTGGCGAAGAGCCTGTCGACGAGCCG
GCCAGTGAGCCTGTAGTCGCCGCTCCTGTGGAAGAAGAGGTGGAAAGTGT
CGAGGAGGAGCCGACGGTCACCGCCGTTGAGGAAGACATCGCTAACACTG
ATGCTGATGCTGGTGCTGCTCCCGCGGAGACGGTCGCGTCGGCGGAGGCT
GCCGAAGAAGGTGGCGAAGAGCCTGTCGACGAGCCGGCCAGTGAGCCTGT
AGTCGCCGCTCCTGTGGAAGAAGAGGTGGAAAGTGTCGAGGAGGAGCCGA
CGGTCACCGCCGTTGAGGAAGACATCGCTAACACTGATGCTGATGCTGGT
GCTGCCCCCGCACAGGAAGGCGCGCAGGCTGAGGGCACCGAGACCCCCGC
CGTCGAGTCGGCTGAGGACCCTGCCGCTGAGCCTGTTGATGGTGCTGCTG
CTGAGCCTACCGCAGGCGAGGAAGAAGCCACCGAGCCCGCCGTTGCTGCG
GCGGCGGTGGAAGAAGCAGCAGACGCTGCGGAGGGAGACGTTGCTGATGC
CGCAGCCCCAGCGCCCAAGCAGGGCGGCGGCGGTGGGTTCGGGATCCTCA
AGAAGTGGCTCAAGAACGCAAAGAAGCCGGTTTCCTTGAAGAAGCTCAAA
GGAAAACGCTCCAAGATCCCTGCCGCGCTTTCTTCCTCCAAGCCCGCGGC
CGGGGAAGAGGGGGCCCCGGAAGATGAGGAGGAGGAGGAGGGGGAGGAGG
GAAGCGAGGACGTTTCTACTGAAGAGGCCGAACCCGAGCCCCCGCACAGG
AAGGCGCGCAGGCTGAGGGCACCGAGACCCCCGCCGTCGAGTCGGCTGAG
GACCCTGCCGCTGAGCCTGTTGATGGTGCTGCTGCTGAGCCTACCGCAGG
CGAGGAAGAAGCCACCGAGCCCGCCGTTGCTGCGGCGGCGGTGGAAGAAG
CAGCAGACGCTGCGGAGGGAGACGTTGCTGATGCCGCAGCCCCAGCGCCC
AAGCAGGGCGGCGGCGGTGGGTTCGGGATCCTCAAGAAGTGGCTCAAGAA
CGCAAAGAAGCCGGTTTCCTTGAAGAAGCTCAAAGGAAAACGCTCCAAGA
TCCCTGCCGCGCTTTCTTCCTCCAAGCCCGCGGCCGGGGAAGAGGGGGCC
CCGGAAGATGAGGAGGAGGAGGAGGGGGAGGAGGGAAGCGAGGACGTTTC
TACTGAAGAGGCCGAACCCGAGGTGCGTTCTGGCGGCAGCGCAGCACCAG
TGGCGGCGTCGAGGTGGCCGTGGTTGATTCGCGCAATTTTGATCGAACCT
TGGGTGCGTTCTGGCGGCAGCGCAGCACCAGTGGCGGCGTCGAGGTGGCC
GTGGTTGATTCGCGCAATTTTGATCGAACCTTGG
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