mRNA_L-elsbetiae_contig717.16002.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig717.16002.1 vs. uniprot
Match: D8LDJ1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDJ1_ECTSI) HSP 1 Score: 227 bits (579), Expect = 8.100e-61 Identity = 201/442 (45.48%), Postives = 256/442 (57.92%), Query Frame = 1 Query: 8209 RCRHEAAMVLQKNRRRAVSRRAFLLLWGASIKVQSNHRRWRARRTLEQRRLSVRVLQRAAKHFVFNRLRTRAATVLQESYRLHMRKKRCRRQRKAVLEAAGAIQQLVRAWVARRAVSRRREERRMDRAAATLQRAMWGHLHRXXXXXXXXXXXXTLWKFMGGLSVKLSRMREKRRQSSAAEIIQSAFRMRRSRLRLRAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKREESAACTXXXXXXXXXXXXXXXXXXXXXXXXAAARIRRWLLRQRRKRTHDIWCERNRS--ALVVQRTWRKSRSSGNANAQRGPASTTVAPSKALPT---------LNRANLQLALDALANGVASCGGRSPSDARQLHEELALREGDPVFETLLCQRLSGLQTALTASCEFAN------KLTEDSTMQRRNGEEALL-QSLRVLEAGLLR 9480 RCR EAA LQK RRR RRA++LL AS+KV++N+RRWRA+R QRRL+V +LQ AA+ FVFN R RAA +LQ +YR +R K CR++RK +L+AA +Q+ RAWVARR V +RR+ RR +RAAATLQ AMW HL R TLWKFMGGLSV LS +R KRR+S+AA IQ+ R S ++ RA XXXXXXXXX +++E XXXXXXXXXXXXXX A +I+ +LL+QRRK CER R ALV+QR WR +A Q P +T+ +L T ++RAN+QLA++ALA G+ G P A L + LAL + DPV E L Q LS L+ AL S + ++T++S G +A L SL LE GLLR Sbjct: 5 RCRREAATTLQKYRRRLALRRAYVLLRSASVKVEANYRRWRAQRNCFQRRLAVGILQEAARRFVFNTRRRRAANLLQSAYRSSVRVKHCRKERKKILDAANVLQRSARAWVARRVVGQRRKVRRQNRAAATLQYAMWRHLLRRKKHRQHVAAALTLWKFMGGLSVTLSAIR-KRRKSAAATRIQAVARQYISLVKTRAILDMHRKEXXXXXXXXXACRGRRCRIHLSTLLLEQDEC----HXXXXXXXXXXXXXXRVKTIQHRACAVKIQIFLLQQRRKARFASRCEREREQGALVLQRAWRWRIIGQDAKTQDEPTTTSEQRRSSLATSPRPEPLRAVDRANVQLAVEALAKGMRRRGVLDPIIADNLSDTLALGQDDPVLEVALRQGLSNLEQALARSTGTVSTNTGLKRMTDESVAVLWGGMDASLPHSLEELEQGLLR 441
BLAST of mRNA_L-elsbetiae_contig717.16002.1 vs. uniprot
Match: A0A6H5L2G6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2G6_9PHAE) HSP 1 Score: 201 bits (511), Expect = 7.780e-52 Identity = 177/439 (40.32%), Postives = 229/439 (52.16%), Query Frame = 1 Query: 8212 CRHEAAMVLQKNRRRAVSRRAFLLLWGASIKVQSNHRRWRARRTLEQRRLSVRVLQRAAKHFVFNRLRTRAATVLQESYRLHMRKKRCRRQRKAVLEAAGAIQQLVRAWVARRAVSRRREERRMDRAAATLQRAMWGHLHRXXXXXXXXXXXXTLWKFMGGLSVKLSRMREKRRQSSAAEIIQSAFRMRRSRLRLRAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKREESAACTXXXXXXXXXXXXXXXXXXXXXXXXAAARIRRWLLRQRRKRTHDIWCERNRSALVVQRTWRKSRSSGNANAQRGPASTT--------VAPSKALP-TLNRANLQLALDALANGVASCGGRSPSDARQLHEELALREGDPVFETLLCQRLSGLQTALTASCEFAN------KLTEDSTMQRRNGEE-ALLQSLRVLEAGLLR 9480 CR EAA LQK RRR RRA++LL AS+KV +N+RRWR +R QRRL+V +LQ+A++ FVFN R RAA +LQ +YR R K R++RK +L+AA +Q+ RAWVARR V RRE +R +RAAA LQ AMW HL R TLWKFMGGLSV LSR+R KRR+S AA IQ+ R S ++ R + XXXXXXXX A A + LL RRK + R + ALV+QR WR+ +A Q P +T+ +P P TL+RAN+QLA+++LA G+ G P A L + LAL + DPV E L Q LS L+ AL S + ++ +S R G++ AL SL+ LE GLLR Sbjct: 10 CRREAATTLQKYRRRLTLRRAYVLLRSASVKVGANYRRWRTQRDCFQRRLAVGILQKASRRFVFNTRRRRAANLLQSAYRSSARVKHGRKERKKILDAANVLQRSARAWVARRVVGWRREVQRRNRAAAALQHAMWRHLWRRKKHRQHVAAALTLWKFMGGLSVTLSRIR-KRRKSVAATRIQAVARQYISLVKTREILDMHRKERAAATRIQAACRGRRYRKHLTTLQVEXXXXXXXXXXXXXXXXHISRVKTIKRR-----ACALKIQTLLHPRRKARYTS--RREQGALVLQRAWRRKIIGQDAKTQDEPTTTSEQRRSSSATSPRPEPPRTLDRANVQLAVESLAKGMRRRGVLDPIIAENLSDTLALGQDDPVLEVALRQGLSNLEQALLWSTRTISTNTGLKQMAAESVAVVRGGKDVALPHSLKELEQGLLR 440 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig717.16002.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig717.16002.1 >prot_L-elsbetiae_contig717.16002.1 ID=prot_L-elsbetiae_contig717.16002.1|Name=mRNA_L-elsbetiae_contig717.16002.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=2954bp MSGRAAALPSFDGAHHAGSESWQSETAEEHARAQPRSLDLVAATVPLIPSback to top mRNA from alignment at L-elsbetiae_contig717:233..18742- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig717.16002.1 ID=mRNA_L-elsbetiae_contig717.16002.1|Name=mRNA_L-elsbetiae_contig717.16002.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=18510bp|location=Sequence derived from alignment at L-elsbetiae_contig717:233..18742- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig717:233..18742- >mRNA_L-elsbetiae_contig717.16002.1 ID=mRNA_L-elsbetiae_contig717.16002.1|Name=mRNA_L-elsbetiae_contig717.16002.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=17724bp|location=Sequence derived from alignment at L-elsbetiae_contig717:233..18742- (Laminarionema elsbetiae ELsaHSoW15)back to top |