mRNA_L-elsbetiae_contig7156.15980.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7156.15980.1
Unique NamemRNA_L-elsbetiae_contig7156.15980.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig7156.15980.1 vs. uniprot
Match: D8LLD9_ECTSI (Putative PKG-Ib n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLD9_ECTSI)

HSP 1 Score: 336 bits (862), Expect = 3.330e-102
Identity = 217/392 (55.36%), Postives = 229/392 (58.42%), Query Frame = 1 
Query:    1 LSVGDWSFQIWKVGLRKPVFSSPMAANYLTTGRWSPTRPGMLFLGKVDGSMDVWDFTDSSFTPSVTLMSSPSRITSMEFLKPKGVGGAAKLKQQLLTVGDAAGNLHVYDVPQNLWRPLANERAIMSHFLEREIK-------------------------------------------------------------------------------------------------------------------------------------RVEHVTARLDVRTAEAEAMEAEELQNALNQPPDGAXXXXXXXXXXPADT------GTXXXSSNENGDKSKVA--DTSEELTEEEKTHLAELEEKFIEELGLTDVDLPDRYLATKKLAEGGEPALM 753
            LSVGDWSFQIWKVGLRKPVFSSPMAANYLTTGRWSPTRPGMLFLGKVDGSMDVWDFTDSSFTPSVTLMSSPSRITSMEFLKPKGVGGAAKLKQQLLTVGDAAGNLHVYDVPQNLWRPLANERAIMS+FLEREIK                                                                                                                                     RVEHV+ RL++RTAEAEAMEAEE+QNALNQPPDGA XXXXXXXXX          G    ++   GDK++ A     EELTE EK HLAELEEKFIE+LGLTD DLP+RYLATK+LAE  EPALM
Sbjct:  769 LSVGDWSFQIWKVGLRKPVFSSPMAANYLTTGRWSPTRPGMLFLGKVDGSMDVWDFTDSSFTPSVTLMSSPSRITSMEFLKPKGVGGAAKLKQQLLTVGDAAGNLHVYDVPQNLWRPLANERAIMSYFLEREIKVFTANLSIEASENDLFNEKQPLWRCDILFWLFLLGVAGWHHFRDSCFLSPTNRALKHMYINPIGTLVFYLSNHLSPCPTRYIQPAMKPLGEARLSQYWRPTQPTSINPTSITLKPNATLRFFSCSVSLHTMTKRVEHVSERLEIRTAEAEAMEAEEMQNALNQPPDGAAXXXXXXXXXXXXXXXXXXXGGAVGTATTKGDKNRAAADPALEELTEAEKAHLAELEEKFIEDLGLTDADLPERYLATKRLAEADEPALM 1160
[Close]
BLAST of mRNA_L-elsbetiae_contig7156.15980.1 vs. uniprot
Match: A0A6H5JTY6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTY6_9PHAE)

HSP 1 Score: 277 bits (709), Expect = 9.620e-81
Identity = 163/295 (55.25%), Postives = 168/295 (56.95%), Query Frame = 1 
Query:    1 LSVGDWSFQIWKVGLRKPVFSSPMAANYLTTGRWSPTRPGMLFLGKVDGSMDVWDFTDSSFTPSVTLMSSPSRITSMEFLKPKGVGGAAKLKQQLLTVGDAAGNLHVYDVPQNLWRPLANERAIMSHFLEREIK------------------------------------------------------------------------------------------------------------------------------RVEHVTARLDVRTAEAEAMEAEELQNALNQPPDGA 507
            LSVGDWSFQIWKVGLRKPVFSSPMAANYLTTGRWSPTRPGMLFLGKVDGSMDVWDFTDSSFTPSVTLMSSPSRITSMEFLKPKGVGGAAKLKQQLLTVGDAAGNLHVYDVPQNLWRPLANERAIMS+FLEREIK                                                                                                                              RVEHV+ RL++RTAEAEAMEAEE+QNALNQPPDGA
Sbjct:  775 LSVGDWSFQIWKVGLRKPVFSSPMAANYLTTGRWSPTRPGMLFLGKVDGSMDVWDFTDSSFTPSVTLMSSPSRITSMEFLKPKGVGGAAKLKQQLLTVGDAAGNLHVYDVPQNLWRPLANERAIMSYFLEREIKVFTANLSIKAKENDLFNEKPVISRCVDCFYSLWLAAPLQRQSFSVAHQTRAEAHAMDTLVFYFSNHLLPCPTRYIQPAMKPRGKARLSQYRRPTQPTSFKPTSITLEPNATLSFFSCSVSVHTLTKRVEHVSERLEIRTAEAEAMEAEEMQNALNQPPDGA 1069
[Close]
BLAST of mRNA_L-elsbetiae_contig7156.15980.1 vs. uniprot
Match: A0A7S2SK86_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SK86_9STRA)

HSP 1 Score: 186 bits (472), Expect = 1.560e-48
Identity = 121/254 (47.64%), Postives = 163/254 (64.17%), Query Frame = 1 
Query:    1 LSVGDWSFQIWKVGLRKPVFSSPMAANYLTTGRWSPTRPGMLFLGKVDGSMDVWDFTDSSFTPSVTLMSSPSRITSMEFLKPKGVGGAAKLKQQLLTVGDAAGNLHVYDVPQNLWRPLANERAIMSHFLEREIKRVEHVTARLDVRTAEAEAMEAEELQNALNQPPDGAXXXXXXXXXXPADTGTXXXSSNEN--GDKSKVADTSEELTEEEKTHLAELEEKFIEELGLTDVDLPDRYLATKKLAEGGEPALMA 756
            LSVGDWSFQ+W +G   P+FSSP A+  L++GRWSPTRPGMLF+GK+DGSMDVWD TDSS+ P++T   + +++T +EFL     G AA  K QLL VGD  GNLHV+D+P++LW+    ER +M++F++RE++RV++   R  +R+ EA   E    ++A   P  G XXXXXXXXXX       XXS NE    D++K                 ELE++FI+EL L D DLPD +L   K   GG  A++A
Sbjct:  680 LSVGDWSFQLWMLGREVPIFSSPAASTSLSSGRWSPTRPGMLFVGKLDGSMDVWDLTDSSYKPALTCTVASTQVTELEFLS----GSAASSKSQLLAVGDLLGNLHVFDIPRSLWKAHPEERQLMANFVQREVQRVDYGRERALLRSQEAGPAEDAGQEDAGLPPAPGXXXXXXXXXXX-------XXSENERLAADEAKYE---------------ELEKRFIQELALADADLPDHWL---KAHPGGTAAILA 904
[Close]
BLAST of mRNA_L-elsbetiae_contig7156.15980.1 vs. uniprot
Match: F0YDW1_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YDW1_AURAN)

HSP 1 Score: 184 bits (467), Expect = 4.480e-48
Identity = 86/151 (56.95%), Postives = 115/151 (76.16%), Query Frame = 1 
Query:    1 LSVGDWSFQIWKVGLRKPVFSSPMAANYLTTGRWSPTRPGMLFLGKVDGSMDVWDFTDSSFTPSVTLMSSPSRITSMEFLKPKGVGGAAKLKQQLLTVGDAAGNLHVYDVPQNLWRPLANERAIMSHFLEREIKRVEHVTARLDVRTAEAE 453
            LSVGDW+FQ+WK+   +P+FSSP A+  LTTG WSPTRPGML++ + DGS+DVWD TDSS+ P+  LM +P+RITS++FL P  +      KQQLL VGD AGNLHV+DVP+NLWRP  NE+A+M+ F+E E+ RV+++  R + R  +AE
Sbjct:  584 LSVGDWNFQLWKLDHPRPIFSSPQASVSLTTGCWSPTRPGMLYMARSDGSVDVWDLTDSSYRPAAQLMVAPTRITSIKFLNPTAIS-----KQQLLAVGDKAGNLHVFDVPRNLWRPSPNEKAMMASFVEGEVSRVDYIDKRAEFRKRQAE 729
[Close]
BLAST of mRNA_L-elsbetiae_contig7156.15980.1 vs. uniprot
Match: A0A7S2GCH0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2GCH0_9STRA)

HSP 1 Score: 182 bits (463), Expect = 1.230e-47
Identity = 84/150 (56.00%), Postives = 113/150 (75.33%), Query Frame = 1 
Query:    1 LSVGDWSFQIWKVGLRKPVFSSPMAANYLTTGRWSPTRPGMLFLGKVDGSMDVWDFTDSSFTPSVTLMSSPSRITSMEFLKPKGVGGAAKLKQQLLTVGDAAGNLHVYDVPQNLWRPLANERAIMSHFLEREIKRVEHVTARLDVRTAEA 450
            LSVGDW+FQ+WK+  + P+FSSP A+ YLT G+WSPTRPGMLF+ + DG +DVWD TDSS+TPSV L  S +RITSMEFL          L  QLL VGD+ GNLH++D+P+NLWR   NE+++M++F++RE+ RV++V  R ++R  EA
Sbjct:  589 LSVGDWNFQLWKLDHKVPIFSSPAASTYLTAGKWSPTRPGMLFIARTDGGVDVWDLTDSSYTPSVALAVSATRITSMEFLPSP----MKSLTSQLLAVGDSNGNLHIFDMPRNLWRAQPNEKSLMANFIDREVNRVDYVAKRSEIRREEA 734
[Close]
BLAST of mRNA_L-elsbetiae_contig7156.15980.1 vs. uniprot
Match: A0A6U4HRU9_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4HRU9_9STRA)

HSP 1 Score: 171 bits (434), Expect = 3.190e-45
Identity = 77/136 (56.62%), Postives = 105/136 (77.21%), Query Frame = 1 
Query:    1 LSVGDWSFQIWKVGLRKPVFSSPMAANYLTTGRWSPTRPGMLFLGKVDGSMDVWDFTDSSFTPSVTLMSSPSRITSMEFLKPKGVGGAAKLKQQLLTVGDAAGNLHVYDVPQNLWRPLANERAIMSHFLEREIKRV 408
            LSVGDWSFQ+WK+G++KP+FSSP++  YLT GRWSP+RP +LF+ ++DGS+DVWDFTD+S+  S  L +SP+RITS+EFL     G      +QLL VGD+ GNLHV+D+P+ L RP+ +E+ IM  FLE+E  +V
Sbjct:  266 LSVGDWSFQLWKLGVQKPIFSSPISDAYLTNGRWSPSRPAVLFISRIDGSIDVWDFTDTSYRHSQRLNASPNRITSIEFLSADAAGRKENSGRQLLAVGDSGGNLHVFDIPRPLGRPIPSEKIIMGSFLEKETSKV 401
[Close]
BLAST of mRNA_L-elsbetiae_contig7156.15980.1 vs. uniprot
Match: A0A7S3NKH4_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NKH4_9STRA)

HSP 1 Score: 164 bits (416), Expect = 5.840e-41
Identity = 80/159 (50.31%), Postives = 115/159 (72.33%), Query Frame = 1 
Query:    1 LSVGDWSFQIWKVG--LRKPVFSSPMAANYLTTGRWSPTRPGMLFLGKVDGSMDVWDFTDSSFTPSVTLMSSPSRITSMEFLKPKGVGGAAKLKQQLLTVGDAAGNLHVYDVPQNLWRPLANERAIMSHFLEREIKRVEHVTARLDVRTAEAEAMEAEE 471
            +S+GD++FQ+WK+   L +PV+SSP + + LT G WSPTRPG++F  + DG++DVWD  DSS  PS  LM +P+R+T+++FLKP+       +KQQLL VGD AGNLHV+DVP++LWRP  NE++ ++ FL+ EI RV++V  R   R  E EA  A++
Sbjct:  787 MSIGDYNFQLWKLDACLLQPVYSSPQSTSPLTAGCWSPTRPGVIFTARADGTLDVWDIPDSSRRPSHQLMVAPTRVTALKFLKPQA--NTTVIKQQLLAVGDKAGNLHVFDVPRSLWRPTQNEKSAIASFLDGEIDRVKYVQQRTQARRKEREARAAKD 943
[Close]
BLAST of mRNA_L-elsbetiae_contig7156.15980.1 vs. uniprot
Match: A0A812S0A3_SYMMI (DNAI3 protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812S0A3_SYMMI)

HSP 1 Score: 149 bits (376), Expect = 7.410e-36
Identity = 67/140 (47.86%), Postives = 97/140 (69.29%), Query Frame = 1 
Query:    1 LSVGDWSFQIWKVGLRKPVFSSPMAANYLTTGRWSPTRPGMLFLGKVDGSMDVWDFTDSSFTPSVTLMSSPSRITSMEFLKPKG-VGGAAKLKQQLLTVGDAAGNLHVYDVPQNLWRPLANERAIMSHFLEREIKRVEHV 417
            LSVGDW F IWK+G  +P+F SP + +++T   WSP RP +L +   DGS+  WDFTDSS+ PS+ L ++ +RITSMEFL     +      +QQLL VGD  G LH++++P+N+ RP+ NE +IM  FL+RE+KR+ ++
Sbjct:  520 LSVGDWKFHIWKIGEDRPLFISPTSPSHMTAAAWSPNRPAVLVVACADGSLMAWDFTDSSYRPSIELKATHTRITSMEFLNSTNTISSTMVSRQQLLAVGDEGGTLHIFEMPRNITRPVPNEESIMRRFLDRELKRLNYI 659
[Close]
BLAST of mRNA_L-elsbetiae_contig7156.15980.1 vs. uniprot
Match: A0A388LI42_CHABU (Uncharacterized protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388LI42_CHABU)

HSP 1 Score: 136 bits (342), Expect = 4.560e-33
Identity = 69/149 (46.31%), Postives = 93/149 (62.42%), Query Frame = 1 
Query:    1 LSVGDWSFQIWKVGLRKPVFSSPMAANYLTTGRWSPTRPGMLFLGKVDGSMDVWDFTDSSFTPSVTLMSSPSRITSMEFLKPKGVGGAAKLKQQLLTVGDAAGNLHVYDVPQNLWRPLANERAIMSHFLEREIKRVEHVTARLDVRTAE 447
            LSVGDW+F IWK G+ KP+F+S  A  + T G WSPTR G++++  +DG++ VWD  D S  PS+    S  +ITSM+F    G         QLL VGDA G LH+ ++P+NL RP+  E+  M +F EREI RV +V  R  +R AE
Sbjct:  114 LSVGDWTFNIWKTGIYKPIFTSRYAETFTTCGCWSPTRAGVVYIALMDGTIQVWDLLDRSHEPSMGANVSSVQITSMDFCLQSG--------PQLLAVGDAQGVLHIMELPRNLRRPIYKEKQYMRNFFEREIDRVNYVAIRAGIRAAE 254
[Close]
BLAST of mRNA_L-elsbetiae_contig7156.15980.1 vs. uniprot
Match: A0A7S4BAV2_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4BAV2_CHRCT)

HSP 1 Score: 139 bits (351), Expect = 1.750e-32
Identity = 70/156 (44.87%), Postives = 101/156 (64.74%), Query Frame = 1 
Query:    1 LSVGDWSFQIWKVGLRKPVFSSPMAANYLTTGRWSPTRPGMLFLGKVDGSMDVWDFTDSSFTPSVTLMSSPSRITSMEFLKPKGVGGAAKLKQQLLTVGDAAGNLHVYDVPQNLWRPLANERAIMSHFLEREIKRVEHVTARLDVRTAEAEAMEAE 468
            L+VGDW F +W+V +  P+F+SP A+  L+ G WSP+RP ++ +GK+DGS+DVWD  D S  PS+T+  + + ITSM F         A  ++Q L VGD  G +HV +VP+NL R  +NE++I +HF ERE KRV +V  R  +R+ +A A   E
Sbjct:  608 LTVGDWHFHLWQVDVESPLFTSPFASCLLSCGVWSPSRPAVVVIGKIDGSIDVWDLLDRSHEPSMTVNITSAAITSMRF--------HAYQQKQFLAVGDDQGTVHVMEVPRNLRRAASNEKSITTHFFEREAKRVAYVARRASMRSEQATAESGE 755
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7156.15980.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LLD9_ECTSI3.330e-10255.36Putative PKG-Ib n=1 Tax=Ectocarpus siliculosus Tax... [more]
A0A6H5JTY6_9PHAE9.620e-8155.25Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S2SK86_9STRA1.560e-4847.64Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
F0YDW1_AURAN4.480e-4856.95Uncharacterized protein (Fragment) n=1 Tax=Aureoco... [more]
A0A7S2GCH0_9STRA1.230e-4756.00Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
A0A6U4HRU9_9STRA3.190e-4556.62Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7S3NKH4_9STRA5.840e-4150.31Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A812S0A3_SYMMI7.410e-3647.86DNAI3 protein n=1 Tax=Symbiodinium microadriaticum... [more]
A0A388LI42_CHABU4.560e-3346.31Uncharacterized protein n=1 Tax=Chara braunii TaxI... [more]
A0A7S4BAV2_CHRCT1.750e-3244.87Hypothetical protein n=1 Tax=Chrysotila carterae T... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7156contigL-elsbetiae_contig7156:268..4628 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score293.1
Seed ortholog evalue1.1e-76
Seed eggNOG ortholog2880.D8LLD9
Preferred nameWDR63
KEGG koko:K07376,ko:K17770
KEGG TC3.A.8.1
KEGG Pathwayko04022,ko04270,ko04540,ko04611,ko04713,ko04714,ko04730,ko04740,ko04923,ko04970,map04022,map04270,map04540,map04611,map04713,map04714,map04730,map04740,map04923,map04970
KEGG ModuleM00694
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005856,GO:0005875,GO:0006928,GO:0007017,GO:0007018,GO:0008150,GO:0009987,GO:0015630,GO:0030286,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044422,GO:0044424,GO:0044430,GO:0044446,GO:0044464,GO:0045503,GO:0045504,GO:1902494
EggNOG free text desc.dynein heavy chain binding
EggNOG OGsKOG1587@1,KOG1587@2759
EC2.7.11.12
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01001,ko02000,ko03029
Exons6
Model size1163
Cds size690
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7156.15980.1prot_L-elsbetiae_contig7156.15980.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7156 1849..4224 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816794.8800616-UTR-L-elsbetiae_contig7156:267..3031622816794.8800616-UTR-L-elsbetiae_contig7156:267..303Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7156 268..303 +
1691683818.915124-UTR-L-elsbetiae_contig7156:267..3031691683818.915124-UTR-L-elsbetiae_contig7156:267..303Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7156 268..303 +
1622816794.8908768-UTR-L-elsbetiae_contig7156:1815..18481622816794.8908768-UTR-L-elsbetiae_contig7156:1815..1848Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7156 1816..1848 +
1691683818.9300663-UTR-L-elsbetiae_contig7156:1815..18481691683818.9300663-UTR-L-elsbetiae_contig7156:1815..1848Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7156 1816..1848 +
1622816794.9598405-UTR-L-elsbetiae_contig7156:4224..46281622816794.9598405-UTR-L-elsbetiae_contig7156:4224..4628Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7156 4225..4628 +
1691683818.988804-UTR-L-elsbetiae_contig7156:4224..46281691683818.988804-UTR-L-elsbetiae_contig7156:4224..4628Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7156 4225..4628 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816794.9012456-CDS-L-elsbetiae_contig7156:1848..20061622816794.9012456-CDS-L-elsbetiae_contig7156:1848..2006Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7156 1849..2006 +
1691683818.9404416-CDS-L-elsbetiae_contig7156:1848..20061691683818.9404416-CDS-L-elsbetiae_contig7156:1848..2006Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7156 1849..2006 +
1622816794.9114094-CDS-L-elsbetiae_contig7156:2423..25981622816794.9114094-CDS-L-elsbetiae_contig7156:2423..2598Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7156 2424..2598 +
1691683818.9506178-CDS-L-elsbetiae_contig7156:2423..25981691683818.9506178-CDS-L-elsbetiae_contig7156:2423..2598Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7156 2424..2598 +
1622816794.925285-CDS-L-elsbetiae_contig7156:2807..29851622816794.925285-CDS-L-elsbetiae_contig7156:2807..2985Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7156 2808..2985 +
1691683818.9610677-CDS-L-elsbetiae_contig7156:2807..29851691683818.9610677-CDS-L-elsbetiae_contig7156:2807..2985Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7156 2808..2985 +
1622816794.93744-CDS-L-elsbetiae_contig7156:3271..33361622816794.93744-CDS-L-elsbetiae_contig7156:3271..3336Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7156 3272..3336 +
1691683818.969595-CDS-L-elsbetiae_contig7156:3271..33361691683818.969595-CDS-L-elsbetiae_contig7156:3271..3336Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7156 3272..3336 +
1622816794.9479673-CDS-L-elsbetiae_contig7156:4110..42241622816794.9479673-CDS-L-elsbetiae_contig7156:4110..4224Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7156 4111..4224 +
1691683818.978484-CDS-L-elsbetiae_contig7156:4110..42241691683818.978484-CDS-L-elsbetiae_contig7156:4110..4224Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7156 4111..4224 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7156.15980.1

>prot_L-elsbetiae_contig7156.15980.1 ID=prot_L-elsbetiae_contig7156.15980.1|Name=mRNA_L-elsbetiae_contig7156.15980.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=230bp
MAANYLTTGRWSPTRPGMLFLGKVDGSMDVWDFTDSSFTPSVTLMSSPSR
ITSMEFLKPKGVGGAAKLKQQLLTVGDAAGNLHVYDVPQNLWRPLANERA
IMSHFLEREIKRVEHVTARLDVRTAEAEAMEAEELQNALNQPPDGAAAAA
AAGGGDPADTGTGGGSSNENGDKSKVADTSEELTEEEKTHLAELEEKFIE
ELGLTDVDLPDRYLATKKLAEGGEPALMA*
back to top

mRNA from alignment at L-elsbetiae_contig7156:268..4628+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7156.15980.1 ID=mRNA_L-elsbetiae_contig7156.15980.1|Name=mRNA_L-elsbetiae_contig7156.15980.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4361bp|location=Sequence derived from alignment at L-elsbetiae_contig7156:268..4628+ (Laminarionema elsbetiae ELsaHSoW15)
CTCAGCGTGGGCGATTGGAGCTTCCAAATTTGGAAGGTGAAAAAAGAAAA
CAAATGTAAATAAACTGTGGAGTGGGGGGGTTGGGTGGGTGGGTGATCGA
GCGGGTAGCTGCGGGGTAGTGCGTGGCATCCTTGCTCGCTCCTTTCGCAG
GCTTGGGGGACCAGAAGAAAGATACAGGTTTATGCTTGTTTTGAGTTCTC
TTTTGAACGGCGGCCGGCGGCCGGCGCCCGTTCTTGCTAGACGGGGACCG
GAACTTCCACTCGTCCGACGTCTCCCGCCTAAAAACGTATTTTTCCCGAT
CTGCGGAAACCCTGCATTCTGTCAAACTGCTGACAATTTACGCCAGCTAC
GCCAGCACGGCATTGCAGTACTTCGATGCGCTCTAGGGATCTTCTGTGCA
GATTGTGGTCAACTTCCCGCATGCGAAATGGCCAACGACCTCATCGTTGA
AGGCGGGGAGTTTGTCGGTACCATTACATCAGTAAATATGACCCACTTTA
AGTGCTACCGGGTCTGTTTTGGGGGTTGGTTGCACTACAGTCATCGTAAT
AGGAGTGGTAAGAGTGCTTGCCACACACCACCCGTACAGCGAGATGGCTG
CATTTTGTTTTGGTAGGCGAAATAAATCGGTCAGGACGAGCTAGGCTTAG
GCGGAGGTGAGGAGGTGCTGGAAAGAACACCGGCTGCTGTTGAGAAATAA
AGCCATGGCGCTTGGGCGAGTGCTGCTTCGCTCAGTGCGGACAGCGTGAA
ACCGAAAATGGCTGTGCAACGCGAAGAGCTATTTAGTGCGTCCAACACAG
CAACACTGCTGTCGAAACCGAATGCATATTTCGGAAGAGGGCCTTTGAAG
TTCGATGGTTTTTAGAGGTTTCGGTGGGACGGAGTGCTGCATCCCCTCGG
GTAACAATTTCGCTCCCTCCCCTCATACGTACCTTTTGACGAAACGGCTC
CTGCTCGTCGCTTCAGCCCCCGCACATTGTCCGCACATACGGTACACGAG
ACCGGCGGCCTGAGAGTGCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCGCGCCGCAAACGCGCAGGCGGCGTTG
TTCTTGTGGTGTGGTGTCNNNNNNNNNNCCCTCTCTGCGCTCGCGCCCCC
CCGCCTTTGTCCCACATTGGGGACACGAGACCGGCGGCCTTGGAATGGCC
CCCCCCCCCCCCGCTACTTTCGCTCCTATGCGAGCCCTTGCCCGCAGCAG
TGGAACAAAAGTTGAAGCTTTTGCTGTTTCGGAGTTTCGTCCATGGGTGT
GGCATTGCACCCCGTTGCCTCCCCAGCCACATGTGTGTCTTTCCATTTCC
GACTCTCCTGTCCCAACACCCCCTCCACCACATGTGCAACCTGATGCAAT
GTAGATGCCTGCACGTGTAAGTGTTGTTGCGGGAACGTTTTGAGGTTCGA
GCTCGTCGACTTGCGGCCTCATTCGCGCCCTTTCAAGCTCTCTCTCTCTC
TCTCCGCTTTTCTCCTCTTCGGTTCCGACTCGTTTTTTCGACATCGAGGT
GGGGCTCCGGAAACCGGTCTTCTCTTCGCCGATGGCGGCCAACTACCTCA
CCACGGGCCGGTGGTCCCCGACGCGGCCGGGGATGCTCTTCCTCGGAAAA
GTCGACGGCTCGATGGACGTGTGGGACTTCACCGACAGCAGCTTCACGCC
TTCGGTTACTCTCATGAGCAGCCCTTCAAGAATCACGAGGTGTGTGGTGC
CGCGCGGTGCGGTGTAGACGGCGACATTCGTACGTACCGCAACCCGTTTT
TCTCGCACGGTAGTGTCTTGGTTGCGTACCTCGATGGTCTAGTCTCTGCA
CTTCGGAGTTAGTACAATAGGCTGTTACTTTTGTAGAATCTGCAAAGCTT
GGCCGGGGTCAGAAAGAGAAGAAATCCACCGGACGCGCGCGAGAATAAGC
GGAGGTTGCGAAGTCTCCGAGCGCTCGAGGCTGGGCTTTTGCAGTTGCAA
AGCATATTTGTCGACAGTCGCCACGCACGGCCTCGTTTTGCGGTTGTTAA
TAGCGGCGCGAAAAGCAGCTCATCACACGTCACACACAGATATCCGCATA
CACAAACGTGCATGTAAGTCTGAACTATCGGTTTCGCTGCCGCTTCTCTA
CCTTAGCATGGAGTTCTTGAAGCCGAAGGGCGTGGGTGGAGCGGCCAAGC
TGAAACAGCAGCTACTCACCGTGGGAGACGCGGCGGGGAACCTCCACGTG
TACGACGTGCCCCAGAATCTGTGGCGGCCGTTGGCGAACGAGAGAGCCAT
CATGTCTCACTTCCTCGAGAGGGAGATAAAGGTATCTTGTTCACGAAAGC
CTTGCAAAGATGGCGGCGCTTTTTGTGAGGGGTGTGGTCTGTGGACACTC
CTTTTCAATTTCCCCCTGTCGGTAGGCGTAGCCGATCTGTCCTTGGCCGT
GGCCCCCAACCTCAACCCAGCGAGCCCTGATCCTTAGCCGAAAGCGCTGA
CCCTTACTCTCCGTGCCTATCATCTTCACTCGCGACGAAGCGCGTGGAGC
ACGTCACCGCACGGCTGGATGTCCGCACAGCCGAGGCCGAAGCGATGGAA
GCGGAGGAGCTTCAGAATGCCTTGAACCAGCCCCCCGATGGCGCCGCCGC
TGCTGCCGCTGCCGGGGGCGGAGACCCTGCTGATACAGGGACAGGGGGCG
GGTCATCGAATGAAAACGGTGCGTCAGAAAGTGCCACACAGACAACACAA
GCGGGATGGGGTCTCATGATCGGGAAATCGGACAGATCTCGAACCCCAGC
CACCGCTGCGCGTTGTTTTTTTTGCCTCGAATATCGGGTGGTCTTCACCC
AGCTAGCGTGGCGTGCGCCCTTGAAAACGTGCCAATATAATTCCTAGTAC
CTCCACCCGTACCTCTTCCGTATGCAACGATTCTCAATGCCCTCCAAAGC
CTTTGCTGTTATTGTCGTGAATGACTGCCGCTCGATGTCGTCGAATCGGC
ACAGGAGACAAGAGCAAAGTCGCGGATACCTCTGAAGAGCTCACGGAAGA
AGAAAAGACGCATCTAGCGGTAAGTTGGAAGCAGACTTCATTTGCTGCTC
TTATATTTACACTCTTTTTTACTATTTAGTAAAGATCAGTCCATGCGTAT
CTTCTGCTTGTGGATCACTGTATCCACGCCGAATCTGCTCCCGTTGGAAG
GCTCTGGTTGTCTGCACGTCCATGCATGGCAGAACAGCTCTATACTGCCT
CATTCTGAGCACGTTACGGACAGCGTTGCCCGCTAAAACACGCGAACATC
ACTTTAAATTTGTCAGTTGCTGTAGCCACCTCGCCTCCTCCGGGGGGTGG
TGAGGTAAGCACTTGGCGCTGCGTAGTGCCTGAGGGCAAAGCATTCCACT
GCCGAAGAGTGCACCGTCATGGAGGTGATGAAGCTGCCACCACCCGAGGG
GCGGGCGGTTCTGGGATGACAAAACTGTCCCGCTGCGCCTCGGTTTTCGT
TGACCCGACCCATTTCGAAAAGAAGATATACGACGCCATCCTCTAGATAG
TCTTCTTGGTCGTTGTAGCACCCGCAGCGGGGTGTACTATGATCCTCGTT
CGGTGGAGTTGCCGAGGTCACCTATCTACCTAAATACATAGGATTACGAG
GCCAGGTTTATGTAGTACCAGCTGGGAAAACCCTTCGTATATTAGATAAG
CTGTCAAGAAGAGTGCGATGTGTTATCCGAAAAGGTGGCGAAGGTCGACC
CTTACTATTGGCGTCGCCACCCCTATCTACTACCAGAGCCCCGTTGCGAC
CCTCTCACCCGCTCCCACCCGCTCTCCGGCCCCCAACACCCAGGAGTTGG
AGGAAAAATTCATCGAGGAGCTTGGATTAACGGACGTCGACCTCCCCGAT
CGCTACCTGGCCACAAAAAAGCTCGCCGAGGGGGGCGAACCGGCTCTGAT
GGCCTGATTCATACCCGCTATCATTGTAAATCCAAAGTAACTCGCGGGTG
TGTTCGTTCGGGGGAAAGGCCTCCTTCGTATCTACCCTCAGGGGCCCGGG
AAGAGAAGCGTGTTTATAGCCAATGCAGCCGATTTTTTTTCTCACTGGCT
TCACCGGCCCTTGGAAGTATTTACTGTATTGCTTCGGCGTTGTTCATAGA
CCTTCCTCTCCTAGCGAGAGCCGGGGTGGTAACTTTAGTGGTGTCAGATT
TTGGGGATACTTAGCGGGGGAGGGTCTTCAAATGTAAATATCGTAGCAAA
ACAACTCCCTACTGCTGCTGTGATCCGAGCTGCAGGGATGATACGCTGTG
TTATCCTTTGCGGTGTTGTTTTCCCTCTCCTGGAGCTCCATACACAGCGA
CTGGATAAAGC
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig7156:268..4628+

>mRNA_L-elsbetiae_contig7156.15980.1 ID=mRNA_L-elsbetiae_contig7156.15980.1|Name=mRNA_L-elsbetiae_contig7156.15980.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1380bp|location=Sequence derived from alignment at L-elsbetiae_contig7156:268..4628+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGCGGCCAACTACCTCACCACGGGCCGGTGGTCCCCGACGCGGCCGGG
GATGCTCTTCCTCGGAAAAGTCGACGGCTCGATGGACGTGTGGGACTTCA
CCGACAGCAGCTTCACGCCTTCGGTTACTCTCATGAGCAGCCCTTCAAGA
ATCACGAGATGGCGGCCAACTACCTCACCACGGGCCGGTGGTCCCCGACG
CGGCCGGGGATGCTCTTCCTCGGAAAAGTCGACGGCTCGATGGACGTGTG
GGACTTCACCGACAGCAGCTTCACGCCTTCGGTTACTCTCATGAGCAGCC
CTTCAAGAATCACGAGCATGGAGTTCTTGAAGCCGAAGGGCGTGGGTGGA
GCGGCCAAGCTGAAACAGCAGCTACTCACCGTGGGAGACGCGGCGGGGAA
CCTCCACGTGTACGACGTGCCCCAGAATCTGTGGCGGCCGTTGGCGAACG
AGAGAGCCATCATGTCTCACTTCCTCGAGAGGGAGATAAAGCATGGAGTT
CTTGAAGCCGAAGGGCGTGGGTGGAGCGGCCAAGCTGAAACAGCAGCTAC
TCACCGTGGGAGACGCGGCGGGGAACCTCCACGTGTACGACGTGCCCCAG
AATCTGTGGCGGCCGTTGGCGAACGAGAGAGCCATCATGTCTCACTTCCT
CGAGAGGGAGATAAAGCGCGTGGAGCACGTCACCGCACGGCTGGATGTCC
GCACAGCCGAGGCCGAAGCGATGGAAGCGGAGGAGCTTCAGAATGCCTTG
AACCAGCCCCCCGATGGCGCCGCCGCTGCTGCCGCTGCCGGGGGCGGAGA
CCCTGCTGATACAGGGACAGGGGGCGGGTCATCGAATGAAAACGCGCGTG
GAGCACGTCACCGCACGGCTGGATGTCCGCACAGCCGAGGCCGAAGCGAT
GGAAGCGGAGGAGCTTCAGAATGCCTTGAACCAGCCCCCCGATGGCGCCG
CCGCTGCTGCCGCTGCCGGGGGCGGAGACCCTGCTGATACAGGGACAGGG
GGCGGGTCATCGAATGAAAACGGAGACAAGAGCAAAGTCGCGGATACCTC
TGAAGAGCTCACGGAAGAAGAAAAGACGCATCTAGCGGAGACAAGAGCAA
AGTCGCGGATACCTCTGAAGAGCTCACGGAAGAAGAAAAGACGCATCTAG
CGGAGTTGGAGGAAAAATTCATCGAGGAGCTTGGATTAACGGACGTCGAC
CTCCCCGATCGCTACCTGGCCACAAAAAAGCTCGCCGAGGGGGGCGAACC
GGCTCTGATGGCCTGAGAGTTGGAGGAAAAATTCATCGAGGAGCTTGGAT
TAACGGACGTCGACCTCCCCGATCGCTACCTGGCCACAAAAAAGCTCGCC
GAGGGGGGCGAACCGGCTCTGATGGCCTGA
back to top