mRNA_L-elsbetiae_contig7138.15953.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7138.15953.1
Unique NamemRNA_L-elsbetiae_contig7138.15953.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig7138.15953.1 vs. uniprot
Match: A0A6H5L351_9PHAE (DNMT1-RFD domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L351_9PHAE)

HSP 1 Score: 268 bits (685), Expect = 2.800e-79
Identity = 130/144 (90.28%), Postives = 135/144 (93.75%), Query Frame = 1 
Query:  217 SFSMALFSGGLDGSESRGIPSAEYVGSSFRRGRKDGLLLYYVERAPRDYPFEFESKAAGAASLDWSLMRKQLKVDAFCMETFRWYGAKVAEVSEERKQVKVHFNGWKSKFDEWMDWESFRLAPCGSRSSAKREGGQGSAAAKKE 648
            SFSMA FSGGLDGSE RGIPSAE+VGS FR+GRKDGLLLYYVE+APRDYPFE ESKAAGAASLDWS+MRK LKVDAFCMETFRWYGAKVAEVSEERKQVKVHFNGWKSKFDEWMDWESFRLAPCGSRSSAKREG   S AA+KE
Sbjct:  119 SFSMATFSGGLDGSEGRGIPSAEFVGSCFRKGRKDGLLLYYVEKAPRDYPFEVESKAAGAASLDWSVMRKHLKVDAFCMETFRWYGAKVAEVSEERKQVKVHFNGWKSKFDEWMDWESFRLAPCGSRSSAKREGESASTAARKE 262
[Close]
BLAST of mRNA_L-elsbetiae_contig7138.15953.1 vs. uniprot
Match: D7G6R7_ECTSI (Bromo domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6R7_ECTSI)

HSP 1 Score: 263 bits (671), Expect = 2.160e-77
Identity = 127/141 (90.07%), Postives = 132/141 (93.62%), Query Frame = 1 
Query:  226 MALFSGGLDGSESRGIPSAEYVGSSFRRGRKDGLLLYYVERAPRDYPFEFESKAAGAASLDWSLMRKQLKVDAFCMETFRWYGAKVAEVSEERKQVKVHFNGWKSKFDEWMDWESFRLAPCGSRSSAKREGGQGSAAAKKE 648
            MA FSGGLDGSE RGIPSAE+VGS FR+GRKDGLLLYYVE+APRDYPFE ESKAAGAASLDWS+MRK LKVDAFCMETFRWYGAKVAEVSEERKQVKVHFNGWKSKFDEWMDWESFRLAPCGSRSSAKREG   S AA+KE
Sbjct:    1 MATFSGGLDGSEGRGIPSAEFVGSCFRKGRKDGLLLYYVEKAPRDYPFEVESKAAGAASLDWSVMRKHLKVDAFCMETFRWYGAKVAEVSEERKQVKVHFNGWKSKFDEWMDWESFRLAPCGSRSSAKREGESASTAARKE 141
[Close]
BLAST of mRNA_L-elsbetiae_contig7138.15953.1 vs. uniprot
Match: A0A835ZDW7_9STRA (Bromo domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDW7_9STRA)

HSP 1 Score: 92.0 bits (227), Expect = 7.170e-18
Identity = 47/120 (39.17%), Postives = 71/120 (59.17%), Query Frame = 1 
Query:  277 SAEYVGSSFRRGRKDGLLLYYVERAPRDYPFEFESKAAG----------AASLDWSLMRKQLKVDAFCMETFRWYGAKVAEVSEERKQVKVHFNGWKSKFDEWMDWESFRLAPCGSRSSA 606
            S+ +VGS  R  R++GL++YY E APR +  ++E    G          AA  D + +    K D FC+ TFRWYGA+V     + + V++H+N W +++DE +  +SFRLAP G+RS A
Sbjct:  323 SSLHVGSVLRAYRREGLIIYYNEEAPRAHDLQYEVAGTGDSASRAKEEMAAGFDRAKLTLGSKTDVFCVTTFRWYGARVV-AEPDAESVRIHYNKWAARYDEDIPRDSFRLAPYGTRSVA 441
[Close]
BLAST of mRNA_L-elsbetiae_contig7138.15953.1 vs. uniprot
Match: A0A369RXR0_9METZ (PHD finger protein 20-like protein 1 n=2 Tax=Trichoplax TaxID=10227 RepID=A0A369RXR0_9METZ)

HSP 1 Score: 57.8 bits (138), Expect = 3.450e-6
Identity = 23/49 (46.94%), Postives = 34/49 (69.39%), Query Frame = 1 
Query:  463 RWYGAKVAEVSEERKQVKVHFNGWKSKFDEWMDWESFRLAPCGSRSSAK 609
            +WY +K+ +V E+ ++V +HF GW S+FDEW+D +S RL P    SS K
Sbjct:   29 KWYPSKIKDVDEKNQEVLIHFEGWSSRFDEWIDLKSSRLRPTVRTSSRK 77
[Close]
BLAST of mRNA_L-elsbetiae_contig7138.15953.1 vs. uniprot
Match: UPI0014554CC3 (uncharacterized protein LOC117300705 isoform X1 n=3 Tax=Asterias rubens TaxID=7604 RepID=UPI0014554CC3)

HSP 1 Score: 57.0 bits (136), Expect = 6.840e-6
Identity = 25/51 (49.02%), Postives = 35/51 (68.63%), Query Frame = 1 
Query:  463 RWYGAKVAEVSEERKQVKVHFNGWKSKFDEWMDWESFRLAPCGSRSSAKRE 615
            +WY AK+  + E  K V +HF GW S+FDEW+ +ES RL P  +R SA++E
Sbjct:  566 KWYTAKIVNLDEVDKTVLIHFEGWNSRFDEWLGFESDRLRPL-ARVSARKE 615
[Close]
BLAST of mRNA_L-elsbetiae_contig7138.15953.1 vs. uniprot
Match: A0A1S3J5Y0_LINUN (PHD finger protein 20-like protein 1 isoform X1 n=6 Tax=Lingula unguis TaxID=7574 RepID=A0A1S3J5Y0_LINUN)

HSP 1 Score: 56.2 bits (134), Expect = 1.200e-5
Identity = 21/49 (42.86%), Postives = 32/49 (65.31%), Query Frame = 1 
Query:  463 RWYGAKVAEVSEERKQVKVHFNGWKSKFDEWMDWESFRLAPCGSRSSAK 609
            +WY AK+ E+ ++ ++V +HF GW S+FDEW++  S RL P    S  K
Sbjct:  101 KWYPAKIVEIDQKEEEVLIHFEGWNSRFDEWLEMTSERLRPITRHSERK 149
[Close]
BLAST of mRNA_L-elsbetiae_contig7138.15953.1 vs. uniprot
Match: A0A6S7JAI5_PARCT (PHD finger 20 1 (Fragment) n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7JAI5_PARCT)

HSP 1 Score: 52.4 bits (124), Expect = 1.250e-5
Identity = 20/69 (28.99%), Postives = 42/69 (60.87%), Query Frame = 1 
Query:  373 FESKAAGAASLDWSLMRKQLKVDAFCMETFRWYGAKVAEVSEERKQVKVHFNGWKSKFDEWMDWESFRL 579
            + SK +    L++ +  +   +D  C     WY +K+A+V  ++K++ +HF GW S++DEW+ ++S ++
Sbjct:   12 YSSKDSSPNKLEFVVGNRLEAMDYMC----NWYVSKIAKVDHKKKKILIHFEGWNSRYDEWVSFDSKKI 76
[Close]
BLAST of mRNA_L-elsbetiae_contig7138.15953.1 vs. uniprot
Match: T1IXS7_STRMM (C2H2-type domain-containing protein n=1 Tax=Strigamia maritima TaxID=126957 RepID=T1IXS7_STRMM)

HSP 1 Score: 55.5 bits (132), Expect = 2.180e-5
Identity = 22/50 (44.00%), Postives = 34/50 (68.00%), Query Frame = 1 
Query:  466 WYGAKVAEVSEERKQVKVHFNGWKSKFDEWMDWESFRLAPCGSRSSAKRE 615
            WY +K+  +    K+V +HF GW S+FDEW+  +S RL P  +R+SA++E
Sbjct:  328 WYASKIVNLDWNEKEVLIHFEGWSSRFDEWVSMDSHRLRPI-TRTSARKE 376
[Close]
BLAST of mRNA_L-elsbetiae_contig7138.15953.1 vs. uniprot
Match: A0A8B7YCU8_ACAPL (uncharacterized protein LOC110979526 isoform X1 n=4 Tax=Acanthaster planci TaxID=133434 RepID=A0A8B7YCU8_ACAPL)

HSP 1 Score: 55.1 bits (131), Expect = 3.050e-5
Identity = 24/51 (47.06%), Postives = 35/51 (68.63%), Query Frame = 1 
Query:  463 RWYGAKVAEVSEERKQVKVHFNGWKSKFDEWMDWESFRLAPCGSRSSAKRE 615
            +WY A++  V E    V +HF GW S+FDEW++++S RL P  +R SA+RE
Sbjct:  564 KWYLARIVNVDETDNTVLIHFAGWNSRFDEWLEFDSDRLRPL-ARVSARRE 613
[Close]
BLAST of mRNA_L-elsbetiae_contig7138.15953.1 vs. uniprot
Match: UPI0018D77871 (uncharacterized protein LOC119724650 isoform X1 n=3 Tax=Patiria miniata TaxID=46514 RepID=UPI0018D77871)

HSP 1 Score: 55.1 bits (131), Expect = 3.050e-5
Identity = 24/51 (47.06%), Postives = 35/51 (68.63%), Query Frame = 1 
Query:  463 RWYGAKVAEVSEERKQVKVHFNGWKSKFDEWMDWESFRLAPCGSRSSAKRE 615
            +WY A++  V E    V +HF GW S+FDEW++++S RL P  +R SA+RE
Sbjct:  570 KWYLARIVSVDETDSTVLIHFAGWNSRFDEWLEFDSDRLRPM-ARVSARRE 619
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7138.15953.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
A0A6H5L351_9PHAE2.800e-7990.28DNMT1-RFD domain-containing protein n=1 Tax=Ectoca... [more]
D7G6R7_ECTSI2.160e-7790.07Bromo domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A835ZDW7_9STRA7.170e-1839.17Bromo domain-containing protein n=1 Tax=Tribonema ... [more]
A0A369RXR0_9METZ3.450e-646.94PHD finger protein 20-like protein 1 n=2 Tax=Trich... [more]
UPI0014554CC36.840e-649.02uncharacterized protein LOC117300705 isoform X1 n=... [more]
A0A1S3J5Y0_LINUN1.200e-542.86PHD finger protein 20-like protein 1 isoform X1 n=... [more]
A0A6S7JAI5_PARCT1.250e-528.99PHD finger 20 1 (Fragment) n=1 Tax=Paramuricea cla... [more]
T1IXS7_STRMM2.180e-544.00C2H2-type domain-containing protein n=1 Tax=Striga... [more]
A0A8B7YCU8_ACAPL3.050e-547.06uncharacterized protein LOC110979526 isoform X1 n=... [more]
UPI0018D778713.050e-547.06uncharacterized protein LOC119724650 isoform X1 n=... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7138contigL-elsbetiae_contig7138:6012..6661 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score263.5
Seed ortholog evalue8.9e-68
Seed eggNOG ortholog2880.D7G6R7
KEGG koko:K03125
KEGG Pathwayko03022,map03022
Hectar predicted targeting categoryother localisation
EggNOG free text desc.negative regulation of protein autoubiquitination
EggNOG OGsCOG5179@1,KOG0008@2759
Ec32 ortholog descriptionBromodomain WHIM and ARF domain protein
Ec32 orthologEc-26_000390.1
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01001,ko03021,ko03036
Exons1
Model size650
Cds size648
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816792.448734-CDS-L-elsbetiae_contig7138:6011..66591622816792.448734-CDS-L-elsbetiae_contig7138:6011..6659Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7138 6012..6659 +
1691683817.0013373-CDS-L-elsbetiae_contig7138:6011..66591691683817.0013373-CDS-L-elsbetiae_contig7138:6011..6659Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7138 6012..6659 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7138.15953.1prot_L-elsbetiae_contig7138.15953.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7138 6012..6659 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7138.15953.1

>prot_L-elsbetiae_contig7138.15953.1 ID=prot_L-elsbetiae_contig7138.15953.1|Name=mRNA_L-elsbetiae_contig7138.15953.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=216bp
AGAGRGAAGNANADRVGRPTGGAMVVETAPVPSTVGKKRKSSAGNVVVGG
GGGGGGGADEGGPASKKPKPPPSFSMALFSGGLDGSESRGIPSAEYVGSS
FRRGRKDGLLLYYVERAPRDYPFEFESKAAGAASLDWSLMRKQLKVDAFC
METFRWYGAKVAEVSEERKQVKVHFNGWKSKFDEWMDWESFRLAPCGSRS
SAKREGGQGSAAAKKE
back to top

mRNA from alignment at L-elsbetiae_contig7138:6012..6661+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7138.15953.1 ID=mRNA_L-elsbetiae_contig7138.15953.1|Name=mRNA_L-elsbetiae_contig7138.15953.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=650bp|location=Sequence derived from alignment at L-elsbetiae_contig7138:6012..6661+ (Laminarionema elsbetiae ELsaHSoW15)
GCTGGTGCTGGCAGAGGGGCGGCGGGAAATGCTAATGCTGATAGGGTTGG
ACGCCCAACCGGAGGAGCAATGGTGGTGGAGACGGCACCAGTGCCTAGTA
CCGTGGGCAAAAAGCGCAAGTCTTCGGCCGGCAATGTCGTCGTCGGCGGC
GGCGGTGGCGGCGGCGGCGGCGCGGACGAGGGTGGACCGGCCTCGAAGAA
GCCGAAGCCACCGCCGAGTTTCTCGATGGCGCTTTTTTCGGGGGGGCTGG
ACGGGTCGGAGTCGAGAGGCATCCCGTCGGCGGAGTACGTGGGGTCCAGC
TTCCGGAGAGGGAGGAAGGACGGGCTGTTGCTGTACTACGTCGAGAGGGC
CCCAAGGGACTACCCGTTCGAGTTCGAGTCGAAGGCGGCGGGCGCGGCGA
GCCTTGACTGGTCGTTGATGAGGAAGCAGCTCAAGGTGGACGCCTTCTGC
ATGGAGACGTTCCGGTGGTACGGGGCGAAGGTTGCCGAGGTGAGCGAGGA
GCGGAAGCAGGTGAAGGTGCACTTCAATGGCTGGAAGTCCAAGTTCGACG
AGTGGATGGACTGGGAGTCGTTCCGCCTTGCTCCGTGCGGGTCTCGCTCG
TCGGCCAAGCGAGAGGGGGGGCAGGGGTCGGCCGCCGCCAAGAAGGAGAG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig7138:6012..6661+

>mRNA_L-elsbetiae_contig7138.15953.1 ID=mRNA_L-elsbetiae_contig7138.15953.1|Name=mRNA_L-elsbetiae_contig7138.15953.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1296bp|location=Sequence derived from alignment at L-elsbetiae_contig7138:6012..6661+ (Laminarionema elsbetiae ELsaHSoW15)
GCTGGTGCTGGCAGAGGGGCGGCGGGAAATGCTAATGCTGATAGGGTTGG
ACGCCCAACCGGAGGAGCAATGGTGGTGGAGACGGCACCAGTGCCTAGTA
CCGTGGGCAAAAAGCGCAAGTCTTCGGCCGGCAATGTCGTCGTCGGCGGC
GGCGGTGGCGGCGGCGGCGGCGCGGACGAGGGTGGACCGGCCTCGAAGAA
GCCGAAGCCACCGCCGAGTTTCTCGATGGCGCTTTTTTCGGGGGGGCTGG
ACGGGTCGGAGTCGAGAGGCATCCCGTCGGCGGAGTACGTGGGGTCCAGC
TTCCGGAGAGGGAGGAAGGACGGGCTGTTGCTGTACTACGTCGAGAGGGC
CCCAAGGGACTACCCGTTCGAGTTCGAGTCGAAGGCGGCGGGCGCGGCGA
GCCTTGACTGGTCGTTGATGAGGAAGCAGCTCAAGGTGGACGCCTTCTGC
ATGGAGACGTTCCGGTGGTACGGGGCGAAGGTTGCCGAGGTGAGCGAGGA
GCGGAAGCAGGTGAAGGTGCACTTCAATGGCTGGAAGTCCAAGTTCGACG
AGTGGATGGACTGGGAGTCGTTCCGCCTTGCTCCGTGCGGGTCTCGCTCG
TCGGCCAAGCGAGAGGGGGGGCAGGGGTCGGCCGCCGCCAAGAAGGAGGC
TGGTGCTGGCAGAGGGGCGGCGGGAAATGCTAATGCTGATAGGGTTGGAC
GCCCAACCGGAGGAGCAATGGTGGTGGAGACGGCACCAGTGCCTAGTACC
GTGGGCAAAAAGCGCAAGTCTTCGGCCGGCAATGTCGTCGTCGGCGGCGG
CGGTGGCGGCGGCGGCGGCGCGGACGAGGGTGGACCGGCCTCGAAGAAGC
CGAAGCCACCGCCGAGTTTCTCGATGGCGCTTTTTTCGGGGGGGCTGGAC
GGGTCGGAGTCGAGAGGCATCCCGTCGGCGGAGTACGTGGGGTCCAGCTT
CCGGAGAGGGAGGAAGGACGGGCTGTTGCTGTACTACGTCGAGAGGGCCC
CAAGGGACTACCCGTTCGAGTTCGAGTCGAAGGCGGCGGGCGCGGCGAGC
CTTGACTGGTCGTTGATGAGGAAGCAGCTCAAGGTGGACGCCTTCTGCAT
GGAGACGTTCCGGTGGTACGGGGCGAAGGTTGCCGAGGTGAGCGAGGAGC
GGAAGCAGGTGAAGGTGCACTTCAATGGCTGGAAGTCCAAGTTCGACGAG
TGGATGGACTGGGAGTCGTTCCGCCTTGCTCCGTGCGGGTCTCGCTCGTC
GGCCAAGCGAGAGGGGGGGCAGGGGTCGGCCGCCGCCAAGAAGGAG
back to top