mRNA_L-elsbetiae_contig7050.15852.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7050.15852.1
Unique NamemRNA_L-elsbetiae_contig7050.15852.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig7050.15852.1 vs. uniprot
Match: D7FZ51_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZ51_ECTSI)

HSP 1 Score: 116 bits (290), Expect = 1.480e-24
Identity = 180/502 (35.86%), Postives = 210/502 (41.83%), Query Frame = 1 
Query:    1 PDNWDEDTRFDGPEHWGMDQRWKSLFPKSGVRA-------DGSSDSSGGRSNTDSEESDSDGAIRAKDTVDISKDDXXXXXXGHDDGFSPRSSEGDSHDATSLRIG-VARTKIPETAPVPADRERQRRISPSNRPSKSTIVMNRSKGRTA-----------EAQATSRRWRHGTKDTEPASSSRSGTPLRMSRDAYSYLSSEGEEEFDESEANITGHERNSSLTTATATTTPRRRIERKDGGRVTGESPPSAEYRGSSGSKEKIRGRTERDTCAEAGRA-ALPLACDDSSDGSVGSPSGGVGDDDIESSGSESEDGGALNYASSAAXXSGNEGYHAGGQDASGGGKRGIKGSKRRSVSSPSPSHTSGRGKEKRPTQQKGGVLREGGRRGKERESRXXXXXXXXXXXXXXXXXXXXXXXXXXXXHAGGGAGKSKKVRKIVPAKGDEHGWISKDSGGXXXXXXXXXXARGRSNPVSSFQGPQASARKNQERSLTQSKINFPVVL 1446
            PDNW EDTRFDGPEHWG+++RWKSLFPK+G +        D S D  GGRS             RAK T + + D       G DD  +     GD H A   +    AR  +PETAP   D E + RI    RP+  T   + S   T+           E     RRWR   + TEPASSSR+G+  R S    S         FDESEANITGHERN+S            R                                  R  C+      A P   D        SPS    +++IESSGSES  GG  N     +   G+EG    G+  S                                   KG V+R            XXXXXXXX                     A      SKK RK+V A+G+EHGWI+K  GG XXXXXX    R   NPV SFQG Q S RKN ERSLTQSKINFPVVL
Sbjct:    7 PDNWQEDTRFDGPEHWGIEKRWKSLFPKTGFKTKSVGGIVDTSRDKDGGRS-------------RAKGTRNATVD---MTAEGGDDTVTCSLQSGDDHFANFNQPSRAARRTVPETAPE--DPEEEMRIPSYRRPNAKTTATSGSSINTSSIGKAPLYEDEEPTTGQRRWRIQPRSTEPASSSRAGSRARDSVLLPSSSEXXXXXXFDESEANITGHERNNS------------RXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXR--CSPGXXXXAFPYGDD--------SPSRQRREEEIESSGSESC-GGLSN-----SDFDGSEGE---GRKPSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGKGRVVR---------XXXXXXXXXXXHSRMGNNTSSSPIPGSAQGARARSAPSGSKKARKVVRAQGNEHGWIAK-GGGSXXXXXXGGRVR---NPVLSFQGSQISMRKNNERSLTQSKINFPVVL 446
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7050.15852.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FZ51_ECTSI1.480e-2435.86Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7050contigL-elsbetiae_contig7050:470..3698 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-02_006300.1
Exons2
Model size1452
Cds size1452
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816782.72076-CDS-L-elsbetiae_contig7050:469..9641622816782.72076-CDS-L-elsbetiae_contig7050:469..964Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7050 470..964 +
1691683809.6031046-CDS-L-elsbetiae_contig7050:469..9641691683809.6031046-CDS-L-elsbetiae_contig7050:469..964Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7050 470..964 +
1622816782.7312827-CDS-L-elsbetiae_contig7050:2741..36981622816782.7312827-CDS-L-elsbetiae_contig7050:2741..3698Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7050 2742..3698 +
1691683809.6130567-CDS-L-elsbetiae_contig7050:2741..36981691683809.6130567-CDS-L-elsbetiae_contig7050:2741..3698Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7050 2742..3698 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7050.15852.1prot_L-elsbetiae_contig7050.15852.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7050 470..3698 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7050.15852.1

>prot_L-elsbetiae_contig7050.15852.1 ID=prot_L-elsbetiae_contig7050.15852.1|Name=mRNA_L-elsbetiae_contig7050.15852.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=484bp
PDNWDEDTRFDGPEHWGMDQRWKSLFPKSGVRADGSSDSSGGRSNTDSEE
SDSDGAIRAKDTVDISKDDDDDDEDGHDDGFSPRSSEGDSHDATSLRIGV
ARTKIPETAPVPADRERQRRISPSNRPSKSTIVMNRSKGRTAEAQATSRR
WRHGTKDTEPASSSRSGTPLRMSRDAYSYLSSEGEEEFDESEANITGHER
NSSLTTATATTTPRRRIERKDGGRVTGESPPSAEYRGSSGSKEKIRGRTE
RDTCAEAGRAALPLACDDSSDGSVGSPSGGVGDDDIESSGSESEDGGALN
YASSAAGGSGNEGYHAGGQDASGGGKRGIKGSKRRSVSSPSPSHTSGRGK
EKRPTQQKGGVLREGGRRGKERESRHSSSKQKSKGSKASSSSSTPSASGE
KGRHAGGGAGKSKKVRKIVPAKGDEHGWISKDSGGGGGSGGGGGGARGRS
NPVSSFQGPQASARKNQERSLTQSKINFPVVLD*
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mRNA from alignment at L-elsbetiae_contig7050:470..3698+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7050.15852.1 ID=mRNA_L-elsbetiae_contig7050.15852.1|Name=mRNA_L-elsbetiae_contig7050.15852.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3229bp|location=Sequence derived from alignment at L-elsbetiae_contig7050:470..3698+ (Laminarionema elsbetiae ELsaHSoW15)
CCCGACAACTGGGACGAAGACACGCGGTTCGATGGGCCGGAGCACTGGGG
GATGGACCAACGCTGGAAGAGCCTGTTCCCCAAGAGCGGTGTCAGGGCAG
ACGGCAGCAGTGACAGCAGCGGCGGTAGAAGTAACACCGATTCAGAGGAG
AGCGATAGCGATGGAGCAATTCGCGCAAAGGACACGGTGGACATCAGCAA
GGACGACGACGACGATGACGAGGACGGACACGATGATGGGTTTAGTCCGC
GGAGCAGCGAGGGCGATAGCCACGATGCAACCAGCTTGCGCATCGGCGTA
GCTCGGACGAAAATCCCGGAGACGGCGCCAGTGCCAGCGGACAGAGAGCG
GCAACGGCGGATTTCCCCTTCGAATAGGCCGTCGAAGAGCACAATAGTCA
TGAACCGCAGCAAGGGGCGAACGGCCGAGGCGCAGGCGACCTCGAGGAGG
TGGCGTCACGGGACCAAAGACACCGAGCCGGCGTCCAGCTCTAGAGTGGG
CCAGAGGGGTGAGTGGAGGTGTACTACCGACGTTGAATGGGTACATCTTC
AGCGTGTTGTTCACGGGATGGCGGATTCAGGAGGTACCGTAATCATGCGA
GTGATGGCACCCATCGGAGTTATCGCACCCATCGGAGTAATGACACTGGG
GTGCGATAAAAATCAAGCAGAGATTTGATTTAATTCGATTTTCGCACCCC
CGTCGGAGTTATCGCACCCCTGCTGGCGACACATAGCCCCCACGCCTGCG
CCCTCTGACATAGCACAAAAGAGTGTGTGTGCGCAACAGAGATCTCGGCG
GGAGATTGTTTTTGTATTTCGCATTTATCGGGATTTCGCCGCATTTTTAT
TTCGCCGCATTTTTTTGTACGAGGTATGTGTTGCTCAAGAACTGCATGAT
ACCCAGGACTCCACGCCTTGTTGTCCAATATCGTACCCATGTGTGTGTGC
GTGTGTTGCTTACCCTGTACCGCAGAACTGCTGTATGATACCCAGGATTC
CACGCCGTACTGTTCAAAATCGCACGCATCGGAGTTATCGCACCGGTGTG
TTCCCGTTCACAGCATTCTAGCGCCATAAGCCGCTGTAATATCATTCAGC
ATCGCACCCATCGGAGTTATCGCACCGGGGGATGCGTTGAAAAAGCTAAA
ACGCTATGATTTAATTTGATTATCGCACCCCCATCGGAGTTAATTAAGAA
CGATCGCACCCCGGTGCCATCACTCGCATGATTACGGTATGCTACGAACG
ATAGATATTGATGTGTGTTGTGGTTAGCTCTACACGTTTCAATTCGCCCG
GTACTGTTGTTGTTGTTGTCTTCACATTAAAAACCGTTCCGATCTCTCTA
CCCACTAAGTACCTCCATGGGTTCGTACTAATCCAACACTGACGCGGTCG
ATTCCCGTGGTCATAGGATAACTTGCCCTAAAAAGGGTATACTGAAAATG
AAAAAAATGTAATAAAAGTATGTACTTTACACACATAGTGCGTTCTGGTA
TTGTCAGTATCTACAAGGCAACCTAGCAGTCGCCACTCAAAACGCCAACA
ATCGTTCTGTATCAGGAAACAGATTTCGCTTTTATCTGGCAGTATCTACC
GTCCGTGCAAGGTAGGAGATACATACCGGAGATACCGAGAGAGGCATCAA
GTGCGAAAAGGCAATCTGAAAAATATTGCATAGACTAGTCTATACCTGCA
CAACCTGACGTATGCACGACACTACCACTGCCGCATTTCTTGACAGGATT
GGTCGGTCATCCCATCTTGCCATGTTGCCCCTGGTCGATTCGATAGCGAC
ACGCACCCATGCCTTTGATATGCTTGAGACGAAGTTAGTTTCTACAGCCG
TAGTGTTGCCTTTCCTTGGTTTGGTTGGGAAACCCTGCCGATATCGAAAG
CTGCAAAAACTGCACTGCTGCTATGTACCTGATATCGTGTGTGACCAACG
CGGCACCACCCATGTATGCCATCAACTCGTTGGTGCTATGCCTTTTCGCG
CTGACCGAAGACGTGCTACGGCCACTGGTCAGCTCAGTTTCCTCTGGTTG
CAGGGCAACTTTTTTCTCTCCGCTGCTTGCTCGAGTTCCAAGCGCCAAAG
TCGCCACCCCCGTCGCGCACTCCACTTGCGCGTTCTCTCCCACCCCTCCC
TCTGACACACCGCCACACGCTGCGTTTCCCTCTTTGCTCTTGCTTTTTGC
TCTGGCTCTCTGTCCTCTCGCTCGTTGCTCTTCTCATCGGCCGTGCGCCG
CGCAGTACGGCAACGCCCTGAGTCCGGCACCCCTCTGCGCATGTCTCGCG
ACGCGTACTCGTACTTGTCTTCCGAAGGCGAGGAGGAGTTTGACGAAAGC
GAGGCGAACATCACTGGCCACGAGCGAAACTCCTCCTTGACAACAGCAAC
AGCAACAACAACGCCCCGCCGCCGAATAGAGAGAAAGGACGGCGGCCGCG
TTACTGGCGAGTCGCCTCCAAGTGCAGAGTATCGTGGCAGCAGCGGCAGC
AAGGAGAAGATACGAGGACGGACGGAAAGGGATACATGTGCGGAGGCTGG
CCGGGCAGCGTTGCCACTCGCTTGCGATGACTCTTCCGACGGCTCTGTCG
GATCGCCCTCTGGGGGCGTGGGGGACGATGACATCGAGTCAAGCGGGTCG
GAATCCGAAGACGGTGGCGCTTTGAACTATGCCAGCAGTGCTGCCGGCGG
CAGCGGAAACGAAGGGTACCACGCAGGAGGCCAGGATGCCAGCGGCGGCG
GGAAACGCGGGATCAAAGGGTCCAAGCGGCGGTCGGTTTCCTCACCCTCG
CCGTCTCACACAAGCGGCAGGGGAAAGGAGAAGCGCCCAACCCAACAAAA
AGGAGGCGTTCTTCGCGAGGGAGGCCGGCGGGGTAAGGAGAGAGAATCAC
GCCATTCGTCATCCAAGCAGAAGAGCAAAGGTAGCAAGGCGTCGAGCTCG
AGCTCAACCCCGTCGGCCTCGGGGGAAAAGGGAAGGCACGCGGGAGGCGG
GGCGGGCAAGAGCAAGAAGGTGCGAAAAATTGTCCCCGCCAAGGGAGACG
AACACGGCTGGATTTCCAAGGATAGTGGCGGAGGCGGCGGCAGTGGTGGT
GGCGGTGGTGGTGCGCGGGGGAGGAGCAACCCCGTGTCTTCGTTCCAGGG
ACCGCAGGCCTCTGCTCGGAAAAACCAAGAGAGGAGCTTGACGCAATCCA
AGATTAACTTCCCTGTTGTGCTGGATTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7050:470..3698+

>mRNA_L-elsbetiae_contig7050.15852.1 ID=mRNA_L-elsbetiae_contig7050.15852.1|Name=mRNA_L-elsbetiae_contig7050.15852.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2904bp|location=Sequence derived from alignment at L-elsbetiae_contig7050:470..3698+ (Laminarionema elsbetiae ELsaHSoW15)
CCCGACAACTGGGACGAAGACACGCGGTTCGATGGGCCGGAGCACTGGGG
GATGGACCAACGCTGGAAGAGCCTGTTCCCCAAGAGCGGTGTCAGGGCAG
ACGGCAGCAGTGACAGCAGCGGCGGTAGAAGTAACACCGATTCAGAGGAG
AGCGATAGCGATGGAGCAATTCGCGCAAAGGACACGGTGGACATCAGCAA
GGACGACGACGACGATGACGAGGACGGACACGATGATGGGTTTAGTCCGC
GGAGCAGCGAGGGCGATAGCCACGATGCAACCAGCTTGCGCATCGGCGTA
GCTCGGACGAAAATCCCGGAGACGGCGCCAGTGCCAGCGGACAGAGAGCG
GCAACGGCGGATTTCCCCTTCGAATAGGCCGTCGAAGAGCACAATAGTCA
TGAACCGCAGCAAGGGGCGAACGGCCGAGGCGCAGGCGACCTCGAGGAGG
TGGCGTCACGGGACCAAAGACACCGAGCCGGCGTCCAGCTCTAGACCCGA
CAACTGGGACGAAGACACGCGGTTCGATGGGCCGGAGCACTGGGGGATGG
ACCAACGCTGGAAGAGCCTGTTCCCCAAGAGCGGTGTCAGGGCAGACGGC
AGCAGTGACAGCAGCGGCGGTAGAAGTAACACCGATTCAGAGGAGAGCGA
TAGCGATGGAGCAATTCGCGCAAAGGACACGGTGGACATCAGCAAGGACG
ACGACGACGATGACGAGGACGGACACGATGATGGGTTTAGTCCGCGGAGC
AGCGAGGGCGATAGCCACGATGCAACCAGCTTGCGCATCGGCGTAGCTCG
GACGAAAATCCCGGAGACGGCGCCAGTGCCAGCGGACAGAGAGCGGCAAC
GGCGGATTTCCCCTTCGAATAGGCCGTCGAAGAGCACAATAGTCATGAAC
CGCAGCAAGGGGCGAACGGCCGAGGCGCAGGCGACCTCGAGGAGGTGGCG
TCACGGGACCAAAGACACCGAGCCGGCGTCCAGCTCTAGATCCGGCACCC
CTCTGCGCATGTCTCGCGACGCGTACTCGTACTTGTCTTCCGAAGGCGAG
GAGGAGTTTGACGAAAGCGAGGCGAACATCACTGGCCACGAGCGAAACTC
CTCCTTGACAACAGCAACAGCAACAACAACGCCCCGCCGCCGAATAGAGA
GAAAGGACGGCGGCCGCGTTACTGGCGAGTCGCCTCCAAGTGCAGAGTAT
CGTGGCAGCAGCGGCAGCAAGGAGAAGATACGAGGACGGACGGAAAGGGA
TACATGTGCGGAGGCTGGCCGGGCAGCGTTGCCACTCGCTTGCGATGACT
CTTCCGACGGCTCTGTCGGATCGCCCTCTGGGGGCGTGGGGGACGATGAC
ATCGAGTCAAGCGGGTCGGAATCCGAAGACGGTGGCGCTTTGAACTATGC
CAGCAGTGCTGCCGGCGGCAGCGGAAACGAAGGGTACCACGCAGGAGGCC
AGGATGCCAGCGGCGGCGGGAAACGCGGGATCAAAGGGTCCAAGCGGCGG
TCGGTTTCCTCACCCTCGCCGTCTCACACAAGCGGCAGGGGAAAGGAGAA
GCGCCCAACCCAACAAAAAGGAGGCGTTCTTCGCGAGGGAGGCCGGCGGG
GTAAGGAGAGAGAATCACGCCATTCGTCATCCAAGCAGAAGAGCAAAGGT
AGCAAGGCGTCGAGCTCGAGCTCAACCCCGTCGGCCTCGGGGGAAAAGGG
AAGGCACGCGGGAGGCGGGGCGGGCAAGAGCAAGAAGGTGCGAAAAATTG
TCCCCGCCAAGGGAGACGAACACGGCTGGATTTCCAAGGATAGTGGCGGA
GGCGGCGGCAGTGGTGGTGGCGGTGGTGGTGCGCGGGGGAGGAGCAACCC
CGTGTCTTCGTTCCAGGGACCGCAGGCCTCTGCTCGGAAAAACCAAGAGA
GGAGCTTGACGCAATCCAAGATTAACTTCCCTGTTGTGCTGGATTGATCC
GGCACCCCTCTGCGCATGTCTCGCGACGCGTACTCGTACTTGTCTTCCGA
AGGCGAGGAGGAGTTTGACGAAAGCGAGGCGAACATCACTGGCCACGAGC
GAAACTCCTCCTTGACAACAGCAACAGCAACAACAACGCCCCGCCGCCGA
ATAGAGAGAAAGGACGGCGGCCGCGTTACTGGCGAGTCGCCTCCAAGTGC
AGAGTATCGTGGCAGCAGCGGCAGCAAGGAGAAGATACGAGGACGGACGG
AAAGGGATACATGTGCGGAGGCTGGCCGGGCAGCGTTGCCACTCGCTTGC
GATGACTCTTCCGACGGCTCTGTCGGATCGCCCTCTGGGGGCGTGGGGGA
CGATGACATCGAGTCAAGCGGGTCGGAATCCGAAGACGGTGGCGCTTTGA
ACTATGCCAGCAGTGCTGCCGGCGGCAGCGGAAACGAAGGGTACCACGCA
GGAGGCCAGGATGCCAGCGGCGGCGGGAAACGCGGGATCAAAGGGTCCAA
GCGGCGGTCGGTTTCCTCACCCTCGCCGTCTCACACAAGCGGCAGGGGAA
AGGAGAAGCGCCCAACCCAACAAAAAGGAGGCGTTCTTCGCGAGGGAGGC
CGGCGGGGTAAGGAGAGAGAATCACGCCATTCGTCATCCAAGCAGAAGAG
CAAAGGTAGCAAGGCGTCGAGCTCGAGCTCAACCCCGTCGGCCTCGGGGG
AAAAGGGAAGGCACGCGGGAGGCGGGGCGGGCAAGAGCAAGAAGGTGCGA
AAAATTGTCCCCGCCAAGGGAGACGAACACGGCTGGATTTCCAAGGATAG
TGGCGGAGGCGGCGGCAGTGGTGGTGGCGGTGGTGGTGCGCGGGGGAGGA
GCAACCCCGTGTCTTCGTTCCAGGGACCGCAGGCCTCTGCTCGGAAAAAC
CAAGAGAGGAGCTTGACGCAATCCAAGATTAACTTCCCTGTTGTGCTGGA
TTGA
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