mRNA_L-elsbetiae_contig7042.15844.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7042.15844.1
Unique NamemRNA_L-elsbetiae_contig7042.15844.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7042.15844.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7042contigL-elsbetiae_contig7042:3309..3750 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size444
Cds size303
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816781.9613914-UTR-L-elsbetiae_contig7042:3308..34471622816781.9613914-UTR-L-elsbetiae_contig7042:3308..3447Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7042 3309..3447 +
1691683808.9441264-UTR-L-elsbetiae_contig7042:3308..34471691683808.9441264-UTR-L-elsbetiae_contig7042:3308..3447Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7042 3309..3447 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816781.9727068-CDS-L-elsbetiae_contig7042:3447..37501622816781.9727068-CDS-L-elsbetiae_contig7042:3447..3750Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7042 3448..3750 +
1691683808.9560735-CDS-L-elsbetiae_contig7042:3447..37501691683808.9560735-CDS-L-elsbetiae_contig7042:3447..3750Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7042 3448..3750 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7042.15844.1prot_L-elsbetiae_contig7042.15844.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7042 3448..3750 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7042.15844.1

>prot_L-elsbetiae_contig7042.15844.1 ID=prot_L-elsbetiae_contig7042.15844.1|Name=mRNA_L-elsbetiae_contig7042.15844.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=101bp
MSEMRRTGGTGGRTKAGPGNGHHEAMGGRCLFSRKNSTTRKTKLARGLSD
ARLFACFLGARFRLRREGGGQMLYPSANTRECFMGTRSHYLTIPDKTVPS
L
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mRNA from alignment at L-elsbetiae_contig7042:3309..3750+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7042.15844.1 ID=mRNA_L-elsbetiae_contig7042.15844.1|Name=mRNA_L-elsbetiae_contig7042.15844.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=442bp|location=Sequence derived from alignment at L-elsbetiae_contig7042:3309..3750+ (Laminarionema elsbetiae ELsaHSoW15)
GGTCTTCACGCATACACACACGCCAACGCACAGACGCACACGCACACGCA
CACGCACACGCACGGAACAAAACGGGGGGAGAGGGGAGAACAGTCCCAGA
CGATGATGGGCTTTTATTGCGTTGAGAGGCTGCGTACCAATGAGTGAAAT
GAGAAGAACGGGGGGCACAGGCGGTCGAACAAAAGCCGGTCCAGGAAATG
GACACCACGAAGCGATGGGGGGCCGCTGTCTCTTCTCGCGCAAGAACTCG
ACGACAAGAAAAACAAAACTCGCACGAGGTTTGTCAGACGCCCGGCTTTT
TGCCTGTTTTCTGGGGGCCCGGTTCCGGCTCCGCAGGGAGGGGGGTGGTC
AGATGCTTTATCCATCCGCTAACACTCGGGAGTGTTTCATGGGGACCCGT
TCCCACTATCTCACCATCCCCGACAAGACGGTGCCCTCCCTC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7042:3309..3750+

>mRNA_L-elsbetiae_contig7042.15844.1 ID=mRNA_L-elsbetiae_contig7042.15844.1|Name=mRNA_L-elsbetiae_contig7042.15844.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=606bp|location=Sequence derived from alignment at L-elsbetiae_contig7042:3309..3750+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAGTGAAATGAGAAGAACGGGGGGCACAGGCGGTCGAACAAAAGCCGG
TCCAGGAAATGGACACCACGAAGCGATGGGGGGCCGCTGTCTCTTCTCGC
GCAAGAACTCGACGACAAGAAAAACAAAACTCGCACGAGGTTTGTCAGAC
GCCCGGCTTTTTGCCTGTTTTCTGGGGGCCCGGTTCCGGCTCCGCAGGGA
GGGGGGTGGTCAGATGCTTTATCCATCCGCTAACACTCGGGAGTGTTTCA
TGGGGACCCGTTCCCACTATCTCACCATCCCCGACAAGACGGTGCCCTCC
CTCATGAGTGAAATGAGAAGAACGGGGGGCACAGGCGGTCGAACAAAAGC
CGGTCCAGGAAATGGACACCACGAAGCGATGGGGGGCCGCTGTCTCTTCT
CGCGCAAGAACTCGACGACAAGAAAAACAAAACTCGCACGAGGTTTGTCA
GACGCCCGGCTTTTTGCCTGTTTTCTGGGGGCCCGGTTCCGGCTCCGCAG
GGAGGGGGGTGGTCAGATGCTTTATCCATCCGCTAACACTCGGGAGTGTT
TCATGGGGACCCGTTCCCACTATCTCACCATCCCCGACAAGACGGTGCCC
TCCCTC
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