mRNA_L-elsbetiae_contig7029.15828.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7029.15828.1
Unique NamemRNA_L-elsbetiae_contig7029.15828.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig7029.15828.1 vs. uniprot
Match: D7FIX0_ECTSI (Ankyrin Repeat Transient Receptor Potential Channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIX0_ECTSI)

HSP 1 Score: 85.1 bits (209), Expect = 4.000e-17
Identity = 44/69 (63.77%), Postives = 51/69 (73.91%), Query Frame = 1 
Query:   10 RFLVLEHGTLLVYASEDDWAEHQEPLDDVPLSADSTVEAVQEGGELLVKLRCPDHPPLSFSGSAVPASD 216
            RFLVL+H  LLVYAS+ DWA+HQEPLDDV LSA+S VE  +E    LVKLR P H PL F+ SAV  +D
Sbjct:   15 RFLVLDHAVLLVYASKSDWADHQEPLDDVVLSAESVVETTREREGALVKLRGPGHSPLCFTCSAVNVND 83
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7029.15828.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FIX0_ECTSI4.000e-1763.77Ankyrin Repeat Transient Receptor Potential Channe... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7029contigL-elsbetiae_contig7029:4694..5994 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score88.2
Seed ortholog evalue2.4e-15
Seed eggNOG ortholog2880.D7FIX0
Hectar predicted targeting categoryother localisation
EggNOG free text desc.temperature-gated cation channel activity
EggNOG OGsCOG0666@1,KOG0510@2759
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size307
Cds size306
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816780.0786886-CDS-L-elsbetiae_contig7029:4693..48371622816780.0786886-CDS-L-elsbetiae_contig7029:4693..4837Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7029 4694..4837 +
1691683807.4220667-CDS-L-elsbetiae_contig7029:4693..48371691683807.4220667-CDS-L-elsbetiae_contig7029:4693..4837Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7029 4694..4837 +
1622816780.0926347-CDS-L-elsbetiae_contig7029:5832..59941622816780.0926347-CDS-L-elsbetiae_contig7029:5832..5994Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7029 5833..5994 +
1691683807.432966-CDS-L-elsbetiae_contig7029:5832..59941691683807.432966-CDS-L-elsbetiae_contig7029:5832..5994Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7029 5833..5994 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7029.15828.1prot_L-elsbetiae_contig7029.15828.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7029 4694..5994 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7029.15828.1

>prot_L-elsbetiae_contig7029.15828.1 ID=prot_L-elsbetiae_contig7029.15828.1|Name=mRNA_L-elsbetiae_contig7029.15828.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=102bp
MFSRFLVLEHGTLLVYASEDDWAEHQEPLDDVPLSADSTVEAVQEGGELL
VKLRCPDHPPLSFSGSAVPASDDAGTGAGDDDESKSVDHDSAGPDSGAWK
KA
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mRNA from alignment at L-elsbetiae_contig7029:4694..5994+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7029.15828.1 ID=mRNA_L-elsbetiae_contig7029.15828.1|Name=mRNA_L-elsbetiae_contig7029.15828.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1301bp|location=Sequence derived from alignment at L-elsbetiae_contig7029:4694..5994+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTTCTCAAGATTCCTGGTGCTGGAGCACGGCACTCTTCTGGTGTACGC
GAGCGAGGACGACTGGGCGGAGCACCAAGAGCCGCTGGACGACGTCCCGC
TCTCCGCGGACTCTACGGTGGAGGCCGTGCAGGAAGGAGGAGAGGTTAGT
TTCGGTCGTCCCGCGTGCAGGGCACTCTTTAAAATAAAGCAAAGAATCAA
AGATGGAACCTAACCCATACTAGAGCAAAGACTCGATATGGGGTTCAGAC
GGTATTATTCCATACAGAGACGTAATATTTGGCGAAGCGAGCAGAAAAAA
CAACCTAAATATCAGAAGAATTCAACGTCTCCCCTGCAAGGATTTAGATT
TGCGAGGTCGGCCAACAATTTGTGTGTATGTTTTTATCGGCATCATCGCG
CCTCTGGCGGCTGCAGCTGCAGCAGACCGCGCAAGAAGGATGAGAGACTC
GTTGCTTCCGTGCAGAGCACTTCCGTGCAGATCACTTCCGTACGGTACCT
GTGTATTTTTTCACCGGCATCGCGCCTCGGGCGGCTGCAGCAGGTGAAAA
TACCGCATTTTTTTAAGTCGAAGGGGCCAATATCCCTTACATTGGACTAT
TAGTCTACACGCCTGTAGGAAGGCAACCCCTGAGATGATCGGGGGAGGGG
GGGGGGGCATGTTTTGTCGCCGGAATGGCTTGACTCTGAGGTAGAGCGAC
TTGACTCCCGCCCCGAGAGTTATGTGAGAGTTGTGTGTGGTTTAGAAGCA
TGTATCTTTGTTGTGCTCAGGTTTGGGTGCAGAAGCGGCCGACTTAGGAG
AGATGCCGGAAAGTTTTTTGCGGCTGTGTAGCCTTGTGTCGCCCACGGAG
GTATTCGATCTGCTCAGAGTAGCAGTGTGGATAAGCTCGAAGTGTGTAGC
ATGCGCACGTGCGCCTTGTAACTCTGCCACTACCGCCGCCGCCACCGTTG
CCGCCGCCGCTGCTTTTGCTGCCGCTGATGCTACCGCTGCTGCTACCGCT
GCTGCTACCGCTGCCGCTCCCGATGCTACTCCCGCTGCTGCTGCTGCCGC
CGCTGCCGCCGCTGCTGCTGCTGCTGGCACTACCGCCGCCGCCGCCGCTA
CCGCTGCTGCTGCCGCTGCCGCTACCGCTGCCGCCTCAGTTGCTGGTGAA
GCTCCGCTGCCCGGATCACCCGCCGCTGTCCTTCAGCGGATCTGCCGTCC
CGGCCTCCGACGATGCCGGCACCGGCGCCGGCGACGACGACGAAAGCAAA
TCCGTCGACCACGACAGCGCGGGGCCCGACAGCGGGGCCTGGAAGAAAGC
C
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7029:4694..5994+

>mRNA_L-elsbetiae_contig7029.15828.1 ID=mRNA_L-elsbetiae_contig7029.15828.1|Name=mRNA_L-elsbetiae_contig7029.15828.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=612bp|location=Sequence derived from alignment at L-elsbetiae_contig7029:4694..5994+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTTCTCAAGATTCCTGGTGCTGGAGCACGGCACTCTTCTGGTGTACGC
GAGCGAGGACGACTGGGCGGAGCACCAAGAGCCGCTGGACGACGTCCCGC
TCTCCGCGGACTCTACGGTGGAGGCCGTGCAGGAAGGAGGAGAGATGTTC
TCAAGATTCCTGGTGCTGGAGCACGGCACTCTTCTGGTGTACGCGAGCGA
GGACGACTGGGCGGAGCACCAAGAGCCGCTGGACGACGTCCCGCTCTCCG
CGGACTCTACGGTGGAGGCCGTGCAGGAAGGAGGAGAGTTGCTGGTGAAG
CTCCGCTGCCCGGATCACCCGCCGCTGTCCTTCAGCGGATCTGCCGTCCC
GGCCTCCGACGATGCCGGCACCGGCGCCGGCGACGACGACGAAAGCAAAT
CCGTCGACCACGACAGCGCGGGGCCCGACAGCGGGGCCTGGAAGAAAGCC
TTGCTGGTGAAGCTCCGCTGCCCGGATCACCCGCCGCTGTCCTTCAGCGG
ATCTGCCGTCCCGGCCTCCGACGATGCCGGCACCGGCGCCGGCGACGACG
ACGAAAGCAAATCCGTCGACCACGACAGCGCGGGGCCCGACAGCGGGGCC
TGGAAGAAAGCC
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