mRNA_L-elsbetiae_contig7020.15824.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7020.15824.1
Unique NamemRNA_L-elsbetiae_contig7020.15824.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig7020.15824.1 vs. uniprot
Match: D8LS34_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS34_ECTSI)

HSP 1 Score: 439 bits (1130), Expect = 1.040e-154
Identity = 215/222 (96.85%), Postives = 220/222 (99.10%), Query Frame = 1 
Query:    1 LYYDRGNHFEFSSVVRELDTAGALVGNRQYRFDFNLAEKPYESYSGLNVRVRYFVRVTISTRGKNVTREMDFVVQNIQQEPDALDSLKMEVGIEDCLHIEFEYDKSAYHLQDVVIGKIYFLLVRIKIKHMEMAIIRRETAGTGSNQYNESETITKYEVMDGAPAKGECVPLRVFLKPYSLTPTYRATNKFTVKYFLNLVLVDEEDRRYFKQQEVTLWRKYVA 666
            LYYDRGNH+EFSSVVRELDTAGALVGNRQYRFDFNLAEKPYESYSGLNVR+RYFVRVTISTRGKNVT+EMDFVVQNIQQEP+ALDSLKMEVGIEDCLHIEFEYDKSAYHLQDVVIGKIYFLLVRIKIKHMEMAIIRRETAGTGSNQYNESETI KYEVMDGAPAKGECVPLRVFLKPY+LTPTYR TNKFTVKYFLNLVLVDEEDRRYFKQQEVTLWRKYVA
Sbjct:   77 LYYDRGNHYEFSSVVRELDTAGALVGNRQYRFDFNLAEKPYESYSGLNVRLRYFVRVTISTRGKNVTKEMDFVVQNIQQEPEALDSLKMEVGIEDCLHIEFEYDKSAYHLQDVVIGKIYFLLVRIKIKHMEMAIIRRETAGTGSNQYNESETIIKYEVMDGAPAKGECVPLRVFLKPYALTPTYRGTNKFTVKYFLNLVLVDEEDRRYFKQQEVTLWRKYVA 298
[Close]
BLAST of mRNA_L-elsbetiae_contig7020.15824.1 vs. uniprot
Match: A0A836CB39_9STRA (Vacuolar protein sorting-associated protein 26-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CB39_9STRA)

HSP 1 Score: 345 bits (885), Expect = 2.120e-117
Identity = 164/224 (73.21%), Postives = 196/224 (87.50%), Query Frame = 1 
Query:    1 LYYDRGNHFEFSSVVRELDTAGALVGNRQYRFDFNLAEKPYESYSGLNVRVRYFVRVTISTRGKNVTREMDFVVQNIQ-QEPDALDSLKMEVGIEDCLHIEFEYDKSAYHLQDVVIGKIYFLLVRIKIKHMEMAIIRRETAGTGSNQYNESETITKYEVMDGAPAKGECVPLRVFLKPYSLTPTYRA-TNKFTVKYFLNLVLVDEEDRRYFKQQEVTLWRKYVA 666
            LYYDRGNH++FSS+VRELDTA +LVGNRQ+ FDF+  +KPYESYSGLNVR+RYFVRVTI+     +T++ +F VQN++ +EP    SLKMEVGIE+CLHIEFEYDKS YHL+DV+IGKIYFLLVRIKIKHME+A++RRE AG+G+  YNESET+ KYEVMDGAP KGECVPLR+FLKPY LTPTY++  NKF+V+Y+LNLVLVDEEDRRYFKQQEV LWR+ V 
Sbjct:   76 LYYDRGNHYKFSSLVRELDTANSLVGNRQFLFDFSNVDKPYESYSGLNVRLRYFVRVTITRNYGTITKDFEFAVQNVEPEEPVMNPSLKMEVGIEECLHIEFEYDKSKYHLRDVIIGKIYFLLVRIKIKHMELAVVRREAAGSGATVYNESETVVKYEVMDGAPVKGECVPLRLFLKPYDLTPTYKSINNKFSVRYYLNLVLVDEEDRRYFKQQEVVLWRRDVG 299
[Close]
BLAST of mRNA_L-elsbetiae_contig7020.15824.1 vs. uniprot
Match: A0A7S2UYV3_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UYV3_9STRA)

HSP 1 Score: 315 bits (808), Expect = 1.150e-105
Identity = 149/226 (65.93%), Postives = 191/226 (84.51%), Query Frame = 1 
Query:    1 LYYDRGNHFEFSSVVRELDTAGALVG-NRQYRFDFNLAEKPYESYSGLNVRVRYFVRVTIS-TRGKNVTREMDFVVQNIQQEPDAL-DSLKMEVGIEDCLHIEFEYDKSAYHLQDVVIGKIYFLLVRIKIKHMEMAIIRRETAGTGSNQYNESETITKYEVMDGAPAKGECVPLRVFLKPYSLTPTYR-ATNKFTVKYFLNLVLVDEEDRRYFKQQEVTLWRKYVA 666
            ++YDRGN ++F+S+VREL+ AG + G +R Y FDF+  +KPYESYSG+NVR+RYFVRVTI+ + G N+ +E +F+VQ    E  A+ ++LKMEVGIEDCLHIEFEYDK+ YHL DV++GK++FLLVRIKIKHME+AIIRRE  GTGSNQYNE+ET+TK+E+MDGAP KGEC+P+R+FL  Y+LTPTYR   N+F+V+Y+LNLVLVDEEDRRYFKQQEV  WR+ + 
Sbjct:   76 MFYDRGNSYDFTSIVRELEAAGVMEGGSRNYTFDFSTVDKPYESYSGINVRLRYFVRVTITRSYGSNIIKEEEFLVQTPSTEETAMTNTLKMEVGIEDCLHIEFEYDKNRYHLADVILGKVFFLLVRIKIKHMEVAIIRREACGTGSNQYNETETLTKFEIMDGAPVKGECIPVRLFLSQYNLTPTYRNVNNRFSVRYYLNLVLVDEEDRRYFKQQEVIFWRQELG 301
[Close]
BLAST of mRNA_L-elsbetiae_contig7020.15824.1 vs. uniprot
Match: UPI0001CBA3F0 (vacuolar protein sorting-associated protein 26B-like n=1 Tax=Saccoglossus kowalevskii TaxID=10224 RepID=UPI0001CBA3F0)

HSP 1 Score: 313 bits (802), Expect = 1.590e-104
Identity = 149/220 (67.73%), Postives = 182/220 (82.73%), Query Frame = 1 
Query:    1 LYYDRGNHFEFSSVVRELDTAGALVGNRQYRFDFNLAEKPYESYSGLNVRVRYFVRVTISTRGKNVTREMDFVVQNIQQEPDALDSLKMEVGIEDCLHIEFEYDKSAYHLQDVVIGKIYFLLVRIKIKHMEMAIIRRETAGTGSNQYNESETITKYEVMDGAPAKGECVPLRVFLKPYSLTPTYRATNK-FTVKYFLNLVLVDEEDRRYFKQQEVTLWRK 657
            LYYDRGNH EF+S+V+EL   G L  +  Y FDF   EKPYESY+G NVR+RYF+RVTI+ R  +VTREMD +V  + Q P+  +S+KMEVGIEDCLHIEFEY+KS YHL+DV++GKIYFLLVRIKIKHME+AII+RET G+G N +NE+ETI KYE+MDGAP +GE +P+R+FL  Y LTPT R  NK F+V+Y+LNLVLVDEE+RRYFKQQE+TLWRK
Sbjct:   73 LYYDRGNHHEFTSLVKELARPGELTQSTTYDFDFVQVEKPYESYTGANVRLRYFLRVTIAKRLTDVTREMDIIVHTLSQYPEMNNSIKMEVGIEDCLHIEFEYNKSKYHLKDVIVGKIYFLLVRIKIKHMELAIIKRETTGSGPNTFNENETIAKYEIMDGAPVRGESIPIRLFLAGYDLTPTMRDINKKFSVRYYLNLVLVDEEERRYFKQQEITLWRK 292
[Close]
BLAST of mRNA_L-elsbetiae_contig7020.15824.1 vs. uniprot
Match: A0A6S8R4Z0_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A6S8R4Z0_9STRA)

HSP 1 Score: 311 bits (796), Expect = 6.460e-104
Identity = 148/221 (66.97%), Postives = 188/221 (85.07%), Query Frame = 1 
Query:    1 LYYDRGNHFEFSSVVRELDTAGALVGNRQYRFDFNLAEKPYESYSGLNVRVRYFVRVTISTRG--KNVTREMDFVVQNIQQEPDALDSLKMEVGIEDCLHIEFEYDKSAYHLQDVVIGKIYFLLVRIKIKHMEMAIIRRETAGTGSNQYNESETITKYEVMDGAPAKGECVPLRVFLKPYSLTPTYRA-TNKFTVKYFLNLVLVDEEDRRYFKQQEVTLWR 654
            L++DRG +++F+ V+RELD  G L+G ++Y FD + AEKPYESY+GLNVR+RYFVRVT+ TRG   ++ +E +F+VQ  Q  P+    +KMEVGIE+CLHIEFEYDKS YHL DVV+GK+YFLLVRIKIKHME+A+IRRE AG G NQ+NESETITKYEVMDGAP +GECVP+R+FL+ ++LTPTYR   NKF+V+Y+LNLVLVD+E+RRYFKQQE+TL+R
Sbjct:   74 LFHDRGTYYDFTCVLRELDVPGVLMGQQRYAFDLSHAEKPYESYNGLNVRLRYFVRVTV-TRGYASSLIKEQEFIVQVSQPAPETNTPVKMEVGIEECLHIEFEYDKSKYHLADVVVGKVYFLLVRIKIKHMELAVIRREAAGAGPNQHNESETITKYEVMDGAPVRGECVPIRLFLRNFNLTPTYRGINNKFSVRYYLNLVLVDQEERRYFKQQEITLYR 293
[Close]
BLAST of mRNA_L-elsbetiae_contig7020.15824.1 vs. uniprot
Match: UPI00188555CB (vacuolar protein sorting-associated protein 26B-like n=1 Tax=Pollicipes pollicipes TaxID=41117 RepID=UPI00188555CB)

HSP 1 Score: 312 bits (799), Expect = 3.200e-103
Identity = 150/220 (68.18%), Postives = 178/220 (80.91%), Query Frame = 1 
Query:    1 LYYDRGNHFEFSSVVRELDTAGALVGNRQYRFDFNLAEKPYESYSGLNVRVRYFVRVTISTRGKNVTREMDFVVQNIQQEPDALDSLKMEVGIEDCLHIEFEYDKSAYHLQDVVIGKIYFLLVRIKIKHMEMAIIRRETAGTGSNQYNESETITKYEVMDGAPAKGECVPLRVFLKPYSLTPTYRATNK-FTVKYFLNLVLVDEEDRRYFKQQEVTLWRK 657
            +YYDRGNH EF S+V+EL   G L  N  Y FDFN  EKPYESY+G NVR+RYF+RVTI  R  ++ REMD  V  + Q PD   S+KMEVGIEDCLHIEFEY+KS YHL+DV++GKIYFLLVRIKIKHME+AI++RET G+G N +NE+ETI KYE+MDGAP +GE +P+RVFL  Y LTPT R  NK F+V+Y+LNLVLVDEEDRRYFKQQE+TLWRK
Sbjct:   76 MYYDRGNHHEFLSLVKELARPGELQQNVSYPFDFNQVEKPYESYTGSNVRLRYFLRVTIVRRLSDLVREMDIAVHTLSQYPDMNTSIKMEVGIEDCLHIEFEYNKSKYHLKDVIVGKIYFLLVRIKIKHMEVAIMKRETTGSGPNTFNENETIAKYEIMDGAPVRGESIPIRVFLAGYDLTPTMRDINKKFSVRYYLNLVLVDEEDRRYFKQQEITLWRK 295
[Close]
BLAST of mRNA_L-elsbetiae_contig7020.15824.1 vs. uniprot
Match: A0A0N7ZCR9_SCYOL (Uncharacterized protein n=4 Tax=Portunidae TaxID=6757 RepID=A0A0N7ZCR9_SCYOL)

HSP 1 Score: 313 bits (802), Expect = 6.460e-103
Identity = 149/220 (67.73%), Postives = 180/220 (81.82%), Query Frame = 1 
Query:    1 LYYDRGNHFEFSSVVRELDTAGALVGNRQYRFDFNLAEKPYESYSGLNVRVRYFVRVTISTRGKNVTREMDFVVQNIQQEPDALDSLKMEVGIEDCLHIEFEYDKSAYHLQDVVIGKIYFLLVRIKIKHMEMAIIRRETAGTGSNQYNESETITKYEVMDGAPAKGECVPLRVFLKPYSLTPTYRATNK-FTVKYFLNLVLVDEEDRRYFKQQEVTLWRK 657
            LYYDRGNH EF+S+V+EL   G L  N  + F+FN  EKPYESYSG NVR+RYF+RVTI  R  ++TREMD +V  +   P+  +S+KMEVGIEDCLHIEFEY+KS YHL+DV++GKIYFLLVRIKIKHME+AII+RET G+G N +NE+ETI KYE+MDGAP +GE +P+RVFL  Y LTPT R  NK F+V+Y LNLVLVDEE+RRYFKQQE+TLWRK
Sbjct:   53 LYYDRGNHHEFTSLVKELARPGELTHNTSFEFEFNQVEKPYESYSGTNVRLRYFLRVTIVRRLSDITREMDLLVHTLSSYPEMNNSIKMEVGIEDCLHIEFEYNKSKYHLKDVIVGKIYFLLVRIKIKHMEIAIIKRETTGSGPNTFNENETIAKYEIMDGAPVRGESIPIRVFLAGYDLTPTMRDINKKFSVRYHLNLVLVDEEERRYFKQQEITLWRK 272
[Close]
BLAST of mRNA_L-elsbetiae_contig7020.15824.1 vs. uniprot
Match: A0A6A4W6K8_AMPAM (Vacuolar protein sorting-associated protein 26B-like n=3 Tax=Amphibalanus amphitrite TaxID=1232801 RepID=A0A6A4W6K8_AMPAM)

HSP 1 Score: 314 bits (804), Expect = 1.040e-102
Identity = 151/220 (68.64%), Postives = 178/220 (80.91%), Query Frame = 1 
Query:    1 LYYDRGNHFEFSSVVRELDTAGALVGNRQYRFDFNLAEKPYESYSGLNVRVRYFVRVTISTRGKNVTREMDFVVQNIQQEPDALDSLKMEVGIEDCLHIEFEYDKSAYHLQDVVIGKIYFLLVRIKIKHMEMAIIRRETAGTGSNQYNESETITKYEVMDGAPAKGECVPLRVFLKPYSLTPTYRATNK-FTVKYFLNLVLVDEEDRRYFKQQEVTLWRK 657
            +YYDRGNH EF S+V+EL   G L  N  Y FDFN  EKPYESY+G NVR+RYF+RVTI  R  ++ REMD  V  + Q PD   S+KMEVGIEDCLHIEFEY+KS YHL+DV++GKIYFLLVRIKIKHME+AII+RET G+G N +NE+ETI KYE+MDGAP +GE +P+RVFL  Y LTPT R  NK F+V+Y+LNLVLVDEEDRRYFKQQE+TLWRK
Sbjct:   76 MYYDRGNHHEFLSLVKELARPGELQQNASYPFDFNQVEKPYESYTGSNVRLRYFLRVTIVRRLSDLVREMDIAVHTLSQYPDMNTSIKMEVGIEDCLHIEFEYNKSKYHLKDVIVGKIYFLLVRIKIKHMEVAIIKRETTGSGPNTFNENETIAKYEIMDGAPVRGESIPIRVFLAGYDLTPTMRDINKKFSVRYYLNLVLVDEEDRRYFKQQEITLWRK 295
[Close]
BLAST of mRNA_L-elsbetiae_contig7020.15824.1 vs. uniprot
Match: A0A7M7PC28_STRPU (Uncharacterized protein n=5 Tax=Eleutherozoa TaxID=133551 RepID=A0A7M7PC28_STRPU)

HSP 1 Score: 308 bits (788), Expect = 2.860e-102
Identity = 147/220 (66.82%), Postives = 178/220 (80.91%), Query Frame = 1 
Query:    1 LYYDRGNHFEFSSVVRELDTAGALVGNRQYRFDFNLAEKPYESYSGLNVRVRYFVRVTISTRGKNVTREMDFVVQNIQQEPDALDSLKMEVGIEDCLHIEFEYDKSAYHLQDVVIGKIYFLLVRIKIKHMEMAIIRRETAGTGSNQYNESETITKYEVMDGAPAKGECVPLRVFLKPYSLTPTYRATNK-FTVKYFLNLVLVDEEDRRYFKQQEVTLWRK 657
            LYYDRGNH EF+S+V+EL   G L  +  Y F+F   EKPYESY+G NVR+RYF+RVTI+ R  +  REMD VV  +   P+   S+KMEVGIEDCLHIEFEY+KS YHL+DV++GKIYFLLVRIKIKHME+AII+RET G+G N +NE+ETI KYE+MDGAP +GE +P+R+FL  Y LTPT R  NK F+V+Y+LNLVLVDEE+RRYFKQQEVTLWRK
Sbjct:   74 LYYDRGNHHEFTSLVKELARPGELTQSTSYPFEFLNVEKPYESYTGANVRLRYFLRVTITKRLTDTVREMDLVVHTLSHYPEVNSSIKMEVGIEDCLHIEFEYNKSKYHLKDVIVGKIYFLLVRIKIKHMELAIIKRETTGSGPNTFNENETIAKYEIMDGAPVRGESIPIRLFLSGYELTPTMRDVNKKFSVRYYLNLVLVDEEERRYFKQQEVTLWRK 293
[Close]
BLAST of mRNA_L-elsbetiae_contig7020.15824.1 vs. uniprot
Match: A0A5B7DK01_PORTR (Vacuolar protein sorting-associated protein 26B-B n=1 Tax=Portunus trituberculatus TaxID=210409 RepID=A0A5B7DK01_PORTR)

HSP 1 Score: 309 bits (791), Expect = 9.800e-102
Identity = 147/220 (66.82%), Postives = 180/220 (81.82%), Query Frame = 1 
Query:    1 LYYDRGNHFEFSSVVRELDTAGALVGNRQYRFDFNLAEKPYESYSGLNVRVRYFVRVTISTRGKNVTREMDFVVQNIQQEPDALDSLKMEVGIEDCLHIEFEYDKSAYHLQDVVIGKIYFLLVRIKIKHMEMAIIRRETAGTGSNQYNESETITKYEVMDGAPAKGECVPLRVFLKPYSLTPTYRATNK-FTVKYFLNLVLVDEEDRRYFKQQEVTLWRK 657
            LYYDRGNH EF+S+V+EL   G L  N  + F+FN  EKPYESYSG NVR+RYF+RVTI  R  ++T+EM+ +V  +   P+  +S+KMEVGIEDCLHIEFEY+KS YHL+DV++GKIYFLLVRIKIKHME+AII+RET G+G N +NE+ETI KYE+MDGAP +GE +P+RVFL  Y LTPT R  NK F+V+Y LNLVLVDEE+RRYFKQQE+TLWRK
Sbjct:   29 LYYDRGNHHEFTSLVKELARPGELSHNTSFEFEFNQVEKPYESYSGTNVRLRYFLRVTIVRRLSDITQEMNLLVHTLSSYPEMNNSIKMEVGIEDCLHIEFEYNKSKYHLKDVIVGKIYFLLVRIKIKHMEIAIIKRETTGSGPNTFNENETIAKYEIMDGAPVRGESIPIRVFLAGYDLTPTMRDINKKFSVRYHLNLVLVDEEERRYFKQQEITLWRK 248
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7020.15824.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LS34_ECTSI1.040e-15496.85Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836CB39_9STRA2.120e-11773.21Vacuolar protein sorting-associated protein 26-dom... [more]
A0A7S2UYV3_9STRA1.150e-10565.93Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
UPI0001CBA3F01.590e-10467.73vacuolar protein sorting-associated protein 26B-li... [more]
A0A6S8R4Z0_9STRA6.460e-10466.97Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
UPI00188555CB3.200e-10368.18vacuolar protein sorting-associated protein 26B-li... [more]
A0A0N7ZCR9_SCYOL6.460e-10367.73Uncharacterized protein n=4 Tax=Portunidae TaxID=6... [more]
A0A6A4W6K8_AMPAM1.040e-10268.64Vacuolar protein sorting-associated protein 26B-li... [more]
A0A7M7PC28_STRPU2.860e-10266.82Uncharacterized protein n=5 Tax=Eleutherozoa TaxID... [more]
A0A5B7DK01_PORTR9.800e-10266.82Vacuolar protein sorting-associated protein 26B-B ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7020contigL-elsbetiae_contig7020:6028..9075 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score440.3
Seed ortholog evalue5.5e-121
Seed eggNOG ortholog2880.D8LS34
Preferred nameVPS26B
KEGG rclassRC00055,RC00523
KEGG koko:K01876,ko:K18466
KEGG ReactionR05577
KEGG Pathwayko00970,ko04144,map00970,map04144
KEGG ModuleM00359,M00360
Hectar predicted targeting categoryother localisation
GOsGO:0000322,GO:0000323,GO:0000324,GO:0000329,GO:0002376,GO:0003674,GO:0003824,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005764,GO:0005768,GO:0005769,GO:0005770,GO:0005773,GO:0005774,GO:0005829,GO:0006810,GO:0006886,GO:0006950,GO:0006952,GO:0006955,GO:0007154,GO:0007165,GO:0007166,GO:0007267,GO:0008104,GO:0008150,GO:0008565,GO:0009894,GO:0009966,GO:0009987,GO:0010008,GO:0010033,GO:0010506,GO:0010646,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016055,GO:0016192,GO:0016197,GO:0016241,GO:0016482,GO:0016787,GO:0019222,GO:0023051,GO:0023052,GO:0030111,GO:0030139,GO:0030904,GO:0030906,GO:0031090,GO:0031323,GO:0031329,GO:0031410,GO:0031982,GO:0032507,GO:0032991,GO:0033036,GO:0033365,GO:0034067,GO:0034097,GO:0034341,GO:0034613,GO:0042147,GO:0042221,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044433,GO:0044437,GO:0044440,GO:0044444,GO:0044446,GO:0044464,GO:0045053,GO:0045087,GO:0045184,GO:0045185,GO:0045335,GO:0046907,GO:0048583,GO:0050789,GO:0050794,GO:0050896,GO:0051179,GO:0051234,GO:0051235,GO:0051641,GO:0051649,GO:0051651,GO:0051716,GO:0065007,GO:0065008,GO:0070727,GO:0070887,GO:0071310,GO:0071345,GO:0071346,GO:0071702,GO:0071705,GO:0097422,GO:0097708,GO:0098588,GO:0098796,GO:0098805,GO:0098852,GO:0098876,GO:0198738,GO:1905114,GO:1990126
EggNOG free text desc.retrograde transport, endosome to Golgi
EggNOG OGsKOG3063@1,KOG3063@2759
EC6.1.1.12
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01007,ko03016,ko03029,ko04131
Ec32 ortholog descriptionVacuolar protein sorting protein 26 related
Ec32 orthologEc-08_001990.1
Exons6
Model size669
Cds size669
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7020.15824.1prot_L-elsbetiae_contig7020.15824.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7020 6028..9075 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816779.8529327-CDS-L-elsbetiae_contig7020:6027..61111622816779.8529327-CDS-L-elsbetiae_contig7020:6027..6111Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7020 6028..6111 +
1691683807.2715652-CDS-L-elsbetiae_contig7020:6027..61111691683807.2715652-CDS-L-elsbetiae_contig7020:6027..6111Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7020 6028..6111 +
1622816779.8635726-CDS-L-elsbetiae_contig7020:6398..65511622816779.8635726-CDS-L-elsbetiae_contig7020:6398..6551Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7020 6399..6551 +
1691683807.2833967-CDS-L-elsbetiae_contig7020:6398..65511691683807.2833967-CDS-L-elsbetiae_contig7020:6398..6551Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7020 6399..6551 +
1622816779.8740675-CDS-L-elsbetiae_contig7020:6876..69901622816779.8740675-CDS-L-elsbetiae_contig7020:6876..6990Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7020 6877..6990 +
1691683807.294056-CDS-L-elsbetiae_contig7020:6876..69901691683807.294056-CDS-L-elsbetiae_contig7020:6876..6990Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7020 6877..6990 +
1622816779.8844445-CDS-L-elsbetiae_contig7020:7710..78551622816779.8844445-CDS-L-elsbetiae_contig7020:7710..7855Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7020 7711..7855 +
1691683807.304846-CDS-L-elsbetiae_contig7020:7710..78551691683807.304846-CDS-L-elsbetiae_contig7020:7710..7855Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7020 7711..7855 +
1622816779.8942795-CDS-L-elsbetiae_contig7020:8350..84741622816779.8942795-CDS-L-elsbetiae_contig7020:8350..8474Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7020 8351..8474 +
1691683807.3158665-CDS-L-elsbetiae_contig7020:8350..84741691683807.3158665-CDS-L-elsbetiae_contig7020:8350..8474Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7020 8351..8474 +
1622816779.904086-CDS-L-elsbetiae_contig7020:9026..90751622816779.904086-CDS-L-elsbetiae_contig7020:9026..9075Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7020 9027..9075 +
1691683807.3273938-CDS-L-elsbetiae_contig7020:9026..90751691683807.3273938-CDS-L-elsbetiae_contig7020:9026..9075Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7020 9027..9075 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7020.15824.1

>prot_L-elsbetiae_contig7020.15824.1 ID=prot_L-elsbetiae_contig7020.15824.1|Name=mRNA_L-elsbetiae_contig7020.15824.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=223bp
LYYDRGNHFEFSSVVRELDTAGALVGNRQYRFDFNLAEKPYESYSGLNVR
VRYFVRVTISTRGKNVTREMDFVVQNIQQEPDALDSLKMEVGIEDCLHIE
FEYDKSAYHLQDVVIGKIYFLLVRIKIKHMEMAIIRRETAGTGSNQYNES
ETITKYEVMDGAPAKGECVPLRVFLKPYSLTPTYRATNKFTVKYFLNLVL
VDEEDRRYFKQQEVTLWRKYVA*
back to top

mRNA from alignment at L-elsbetiae_contig7020:6028..9075+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7020.15824.1 ID=mRNA_L-elsbetiae_contig7020.15824.1|Name=mRNA_L-elsbetiae_contig7020.15824.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3048bp|location=Sequence derived from alignment at L-elsbetiae_contig7020:6028..9075+ (Laminarionema elsbetiae ELsaHSoW15)
CTGTACTACGACCGCGGCAACCACTTCGAGTTTTCTTCGGTCGTCCGGGA
ATTGGATACCGCGGGAGCGCTGGTCGGAAATCGAGTGAGTTTATGCCCAA
CTGCCGGCATTCAACGTCAAGTTCTTTACTTCGAGTTTGTTCAACTTCCA
GTGCGTTGGCTCCTTGAGCGGCGCGAATTCTCAACCGTCATCTCTCAGGG
GCCGTGACAAGAGTCAATGAGATTTAGATGGCGCCGCCAAACCACACCAT
CTCACTTGGTACTCCTGCCCCGCTCTACCTTCTTCTTCGCAGCACTTTGT
GGTGTTATTTGAAGGCTCTTGTGCATTAACCCGATCGAGCTCTCTGTGCG
CCTCTCCCCCCGCCTTGGCAGCAATATCGTTTCGATTTCAACCTGGCGGA
GAAGCCGTACGAATCCTACAGCGGCCTCAACGTACGAGTACGATACTTCG
TGAGAGTTACCATCTCCACCCGAGGGAAGAACGTAACGCGAGAGATGGAC
TTCGTGGTGCAGAACATCCAGCAGGTGACTTTTGTCGCAGTTCGGTCGGG
TCTTACGCATTCCCGGCCCGGCTGGGTATTGGGTTGGGTTGACCCGAGAC
GATTGGGGCCCAGCTTCTCAAATCTGTAGAGGCGAATCTTTCGCAATTTT
CGTGAACCGATGCGCAACACATGAAGCACCTCTTTTATGCACCCCGCGCT
CTCGCGATTTGCCTCGAAAGCTTGCGCGCGCGTGCGCATTTCCACAAGGT
TTTCTCTTGGATCGCCTCCTCGCGTCTGGCCTCCGTGATGCTGTTCTCCT
CATCTCGTGTGTGATCTTTTCGACCTCGATAACGTCTTGACGGCCCCAGG
AACCTGATGCTTTGGATTCTCTCAAGATGGAAGTCGGCATCGAAGACTGC
CTTCACATCGAGTTCGAGTACGACAAGTCGGCGTACCATTTGCAAGACGT
GGTCATCGGCAAGGTGCAGTGCGCCTCGGACCGGGGAGTGAAGACGGTTT
CATGGCAGCGTGAAATTTACCTTTGTATCCTTGAGTCTGTAGCGCGTATG
AAGCTCCGCTCCGTCTTGGTCAAGTGTGTCTACTTAGGCCATTCTTCCTG
GAGAAATAGAAATGAAACGACTAACATCCTGGTGGGCGGAAAGACAGGAC
CACGCGTCTGGGGGGGGTAAATCCCATCTGGTGCTGTACCGTGAGACCGC
TCCATCGTCTTCTCCCGTATGAGCGTCATCGTTATCGTTGCAAACCTCCC
TGAAACGTGATCGGCGTCTCTGAGACAGTACAGCAAAGACAGATGCAATT
GTAGTCCCCAATAGGCCCTGACTCGATATGAACGTTTAGGCCCAGGTTTA
ATGCAATTTGGCCTTGTGGCTGCAATTTTCCAAAAAACGACATTTATGCA
CGGTGTTGATGCCCACAAAAGGGATTAATGCTCAAAATATGCCCAATTTT
GGTGCATACTGCTGTAAACCCACAACTCGGCCTTATTTTCTCTTCTGTTT
GCCATCAAGAAGCCCATTTATGCACTGTGCTATGAAGTCAGGGCCTAGTC
CCCAACTGGAACGCGTTCGGGACCGACAATGCAGACACCGTACTTACACA
CGAAAAACGTGCATCGATTTAAAACTTCAAGTTTGTGCCCCCGCCCCTCC
GTCGGCCCCCAAACATCACCCAAAAACGTGCAGATCTACTTTTTGTTGGT
GCGCATCAAGATCAAGCACATGGAGATGGCCATAATCCGACGAGAGACAG
CGGGGACGGGGTCCAACCAGTACAACGAGAGCGAGACCATCACCAAGTAT
GAGGTCATGGACGGGGCCCCCGCCAAGGGTAAGTAGCGGCAATATGTGCG
CGCGCCAGTATGCAAAAACTCCCCGTTCCTTCCATCGGCGCGTCCATTCC
TTCGTATCCAGGTTCTTGTTCTGGTTTGTGTCTTATCAACGGGCTGTACG
GACGTTTTTGCGAACTGGATGTTTGATTTCTCCCCGCAAAGCGGCGGACC
TTGGGGTGTTTCGGAGGACGAAACGAGCGGCGATTCACTCCGTCTTTTTC
CGCCGAAGATACCGCGCCATGAGGAGTTTGTCCCTCTGGTTTGTGCGACA
GAAAGGCGCGTGTCAGGTATCACGAGAGGCAGGTATTCTGGCGAGAAAGT
GTAAATGGACGCTGCGACGTATCGAGCTTGCCAGCAGGTCGAAACGGTGC
TCGTTTTTTGAAGGCTCTTTGCTTCACGATGTCTGTCAGCCTTCGCACGT
GCCGGGCCAGCAAGCAGATCGAACTAATGCGTGAGTGCCCGCCGCCGCGT
CGACAACAACGTGCGCACGGCAGGGGAGTGTGTGCCGCTGCGTGTGTTCC
TCAAGCCGTACTCGCTGACCCCGACCTACCGAGCGACCAACAAGTTCACG
GTCAAGTACTTCCTCAACCTCGTGCTGGTGGACGAAGAGGACCGTAGGTA
AGCCGTTTCTGTTGAGGGTGTCGATAACAGCATTTTAGATACATCCCTAT
CGCTCCGTCGGTCGCCGTTTTGCTACATACGTCGACGTCAAGCTTTCAAC
GTGGTGAAACCAACCGTGAAATGGTGGGGGGTCCGGAAGACGGCATATCA
TGCTCTGGTCCCAAAGGGGTCCATACATATGTAGGTGCATCACGGACGCC
GTGGTTGCGTTGCGGAATGACGTGTCCGTTGGAGGAGGCGGTCCAGTCGT
TCAATCTCTCGCTGGCGTGTGCTGCGAGTTTTGCAGATAGAGGTACGGGT
GTGTGTACATAATTAGTACTTCGAAGTATACAATTTTCAATTTTCCGCCC
TGGCAAGATATTCCAAAAACACAGCAATAGTAGCTTATTTCATGGCTTAA
CGTGACCAACCACGCCTACGTGGTGCTCCTGCTGATTATTTTCGATGATT
GCGTAGACTCAAGTATCATGTTGTAGGATAAATATTTCCGCTGTCAACCT
CATAAGCCCCCCCCCCCCCTCGCACGCCCGTTTCGCTGAAACGTCGCAGG
TATTTCAAGCAGCAAGAGGTCACTCTGTGGCGTAAGTATGTCGCGTGA
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig7020:6028..9075+

>mRNA_L-elsbetiae_contig7020.15824.1 ID=mRNA_L-elsbetiae_contig7020.15824.1|Name=mRNA_L-elsbetiae_contig7020.15824.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1338bp|location=Sequence derived from alignment at L-elsbetiae_contig7020:6028..9075+ (Laminarionema elsbetiae ELsaHSoW15)
CTGTACTACGACCGCGGCAACCACTTCGAGTTTTCTTCGGTCGTCCGGGA
ATTGGATACCGCGGGAGCGCTGGTCGGAAATCGACTGTACTACGACCGCG
GCAACCACTTCGAGTTTTCTTCGGTCGTCCGGGAATTGGATACCGCGGGA
GCGCTGGTCGGAAATCGACAATATCGTTTCGATTTCAACCTGGCGGAGAA
GCCGTACGAATCCTACAGCGGCCTCAACGTACGAGTACGATACTTCGTGA
GAGTTACCATCTCCACCCGAGGGAAGAACGTAACGCGAGAGATGGACTTC
GTGGTGCAGAACATCCAGCAGCAATATCGTTTCGATTTCAACCTGGCGGA
GAAGCCGTACGAATCCTACAGCGGCCTCAACGTACGAGTACGATACTTCG
TGAGAGTTACCATCTCCACCCGAGGGAAGAACGTAACGCGAGAGATGGAC
TTCGTGGTGCAGAACATCCAGCAGGAACCTGATGCTTTGGATTCTCTCAA
GATGGAAGTCGGCATCGAAGACTGCCTTCACATCGAGTTCGAGTACGACA
AGTCGGCGTACCATTTGCAAGACGTGGTCATCGGCAAGGAACCTGATGCT
TTGGATTCTCTCAAGATGGAAGTCGGCATCGAAGACTGCCTTCACATCGA
GTTCGAGTACGACAAGTCGGCGTACCATTTGCAAGACGTGGTCATCGGCA
AGATCTACTTTTTGTTGGTGCGCATCAAGATCAAGCACATGGAGATGGCC
ATAATCCGACGAGAGACAGCGGGGACGGGGTCCAACCAGTACAACGAGAG
CGAGACCATCACCAAGTATGAGGTCATGGACGGGGCCCCCGCCAAGGATC
TACTTTTTGTTGGTGCGCATCAAGATCAAGCACATGGAGATGGCCATAAT
CCGACGAGAGACAGCGGGGACGGGGTCCAACCAGTACAACGAGAGCGAGA
CCATCACCAAGTATGAGGTCATGGACGGGGCCCCCGCCAAGGGGGAGTGT
GTGCCGCTGCGTGTGTTCCTCAAGCCGTACTCGCTGACCCCGACCTACCG
AGCGACCAACAAGTTCACGGTCAAGTACTTCCTCAACCTCGTGCTGGTGG
ACGAAGAGGACCGTAGGGGAGTGTGTGCCGCTGCGTGTGTTCCTCAAGCC
GTACTCGCTGACCCCGACCTACCGAGCGACCAACAAGTTCACGGTCAAGT
ACTTCCTCAACCTCGTGCTGGTGGACGAAGAGGACCGTAGGTATTTCAAG
CAGCAAGAGGTCACTCTGTGGCGTAAGTATGTCGCGTGAGTATTTCAAGC
AGCAAGAGGTCACTCTGTGGCGTAAGTATGTCGCGTGA
back to top