mRNA_L-elsbetiae_contig6977.15755.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6977.15755.1
Unique NamemRNA_L-elsbetiae_contig6977.15755.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig6977.15755.1 vs. uniprot
Match: A0A6H5L7H3_9PHAE (DNA_MISMATCH_REPAIR_2 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L7H3_9PHAE)

HSP 1 Score: 348 bits (893), Expect = 2.580e-111
Identity = 183/234 (78.21%), Postives = 200/234 (85.47%), Query Frame = 3 
Query:   90 MSDSPLRALGSSGGKDEVDRPIVALKFKLAKHQRTVGVAARLPRQREGMEDKVRWTLVVYEFLDNDQFSNLDTLMLQLAPGRCLLSLDAGAIEGKPRGDMAKVLAAMERLDVTVKDVKATHFKTDDVGARMRALLGDASLAQHSLATEQPVGTACLAALMGHLERKGGDGXXXXXXXXXXXXXXSPEMAPSYALVQGTLQKHLRLDSAAAAAVTLLPDPTAPHQYGSLYGVLNR 791
            MSDS   +L SSGGKDEVDRP+ A+KFK+++HQRTVGVAAR+PRQREGMEDKVRWTLVVYEFLDNDQFSNLDTLMLQLAPG+CLL+LDAGA EGKPRGDMAKVLAAMERLDV V+DVK   FKTDD+  RM+ LLGDASLAQ+SLA EQP+G+ACLAALMG LER+  D               SPEM PSYALVQGTLQKHLRLDSAAAAAVTLLPDPTAPHQYGSL+ VLNR
Sbjct:    1 MSDSLQSSLASSGGKDEVDRPLCAVKFKVSRHQRTVGVAARMPRQREGMEDKVRWTLVVYEFLDNDQFSNLDTLMLQLAPGQCLLTLDAGAAEGKPRGDMAKVLAAMERLDVAVEDVKGGQFKTDDIAGRMKDLLGDASLAQYSLANEQPLGSACLAALMGRLEREDKD------YQSEEGEGESPEM-PSYALVQGTLQKHLRLDSAAAAAVTLLPDPTAPHQYGSLFDVLNR 227
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BLAST of mRNA_L-elsbetiae_contig6977.15755.1 vs. uniprot
Match: A0A835YUY7_9STRA (Muts protein-like protein 2A n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUY7_9STRA)

HSP 1 Score: 143 bits (360), Expect = 4.170e-35
Identity = 87/220 (39.55%), Postives = 122/220 (55.45%), Query Frame = 3 
Query:  135 DEVDRPIVALKFKLAKHQRTVGVAARLPRQREGMEDKVRWTLVVYEFLDNDQFSNLDTLMLQLAPGRCLLSLDAGAIEGKPRGDMAKVLAAMERLDVTVKDVKATHFKTDDVGARMRALLGDASLAQHSLATEQPVGTACLAALMGHLE-RKGGDGXXXXXXXXXXXXXXSPEMAPSYALVQGTLQKHLRLDSAAAAAVTLLPDPTAPHQYGSLYGVLNR 791
            +E++   VA+K  +   QRTVG+ AR+P  R+  +D V W LV YEFLDN+QFSNLD+L+LQL P    ++ + G+ EGKP+GD+AK++  +ER  +         F  +                      E+P+ TAC+AAL+  LE  K  DG                    SY +VQG+L+++++LDSAAA AVTLLPDP  P    S+Y VLNR
Sbjct:    3 EELETCSVAIKLGVKAQQRTVGLCARIPSPRDSEDDTVYWRLVSYEFLDNEQFSNLDSLLLQLGPAEAFVAAEPGSKEGKPKGDLAKLVNMLERRQI--------EFTNE---------------------LERPLATACIAALLKELELEKAEDG--------------------SYRVVQGSLEQYVKLDSAAADAVTLLPDPAFPGANASIYAVLNR 173
[Close]
BLAST of mRNA_L-elsbetiae_contig6977.15755.1 vs. uniprot
Match: A0A7S2UZG6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UZG6_9STRA)

HSP 1 Score: 112 bits (279), Expect = 1.420e-27
Identity = 58/114 (50.88%), Postives = 74/114 (64.91%), Query Frame = 3 
Query:  138 EVDRPIVALKFKLAKHQRTVGVAARLPRQREG--MEDKVRWTLVVYEFLDNDQFSNLDTLMLQLAPGRCLLSLDAGAIEGKPRGDMAKVLAAMERLDVTVKDVKATHFKTDDVG 473
            E + PI+A+++   +HQRTVGVA R  R R G  MED VRWTL VY+FLDNDQFSNLD L++QL PGRC L    GA    P+GD+AK+ A  ER +V   +    +F+    G
Sbjct:    8 EPEAPIMAVQYSSRQHQRTVGVAVRSARARSGSEMEDSVRWTLSVYQFLDNDQFSNLDMLLVQLGPGRCYLPKPEGA--SAPKGDVAKIEAVFERREVATHEAPRQYFRAGSSG 119
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BLAST of mRNA_L-elsbetiae_contig6977.15755.1 vs. uniprot
Match: A0A8K1FEG9_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FEG9_PYTOL)

HSP 1 Score: 104 bits (260), Expect = 1.160e-21
Identity = 79/231 (34.20%), Postives = 112/231 (48.48%), Query Frame = 3 
Query:  135 DEVDRPI--VALKFKLAKHQRTVGVAARLPRQREGM------EDKVRWTLVVYEFLDNDQFSNLDTLMLQLAPGRCLLSLDAGAIEGKPRGDMAKVLAAMERLDVTVKDVKATHFKTDDVGARMRALLGDASLAQHSLATEQPVGTACLAALMGHLE-RKGGDGXXXXXXXXXXXXXXSPEMAPSYALVQGTLQKHLRLDSAAAAAVTLLPDPTAPHQY---GSLYGVLNR 791
            D  D P+  +AL+ K  KH + VGVA R PR R         ED  +W LV+Y F D+ + +NL+TL++QLAP +C LS +    +    GD  KV A ++ LDV    +K   FK   +   +  LLG +SLA +    +  +    LA L+  LE     DG                     YAL  G+L   ++LDSAA  ++ LLPDP+        GS+  +LNR
Sbjct:    3 DVEDAPLAEIALQIKNTKHLKQVGVAVRRPRPRRSCVKGSADEDTKQWELVLYAFSDSSELTNLETLLVQLAPSKCFLSAELS--QDPHVGDSKKVHALLQTLDVANVYIKKHAFKDTGLEGNLTKLLGVSSLASYKNELDMQLAVGSLACLIDSLELMSDADGFGC------------------YALAGGSLSSAMQLDSAAIWSLNLLPDPSVKSSSRFGGSVLEILNR 213
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BLAST of mRNA_L-elsbetiae_contig6977.15755.1 vs. uniprot
Match: A0A2D4BV25_PYTIN (DNA_MISMATCH_REPAIR_2 domain-containing protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BV25_PYTIN)

HSP 1 Score: 94.4 bits (233), Expect = 4.210e-18
Identity = 72/222 (32.43%), Postives = 107/222 (48.20%), Query Frame = 3 
Query:  156 VALKFKLAKHQRTVGVAARLPRQR------EGMEDKVRWTLVVYEFLDNDQFSNLDTLMLQLAPGRCLLSLDAGAIEGKPRGDMAKVLAAMERLDVTVKDVKATHFKTDDVGARMRALLGDASLAQHSLATEQPVGTACLAALMGHLERKGG-DGXXXXXXXXXXXXXXSPEMAPSYALVQGTLQKHLRLDSAAAAAVTLLPDPTAPHQY---GSLYGVLNR 791
            +AL+ K  KH + VGVA   PR R      +  ED   W LVV+EF D+ +F+NL+TL++Q+ P +C L   A  ++    GD  K+ A ++  ++   ++K   FK   + A +  LLGDASLAQ+       +    LA L+   +     DG                     Y L  G L   ++LD+AA  ++ LLPDPT        GS+  +LNR
Sbjct:   16 IALQIKNTKHLKHVGVALCRPRLRRSCVKGQSNEDTKHWELVVFEFSDSSEFTNLETLLVQVMPSKCYLP--AELMQEPLIGDGKKINALLQAQEIVGVEMKKKAFKDTALEANLPRLLGDASLAQYKSEMGMTLAMGSLACLVDARDMMSDTDGFGC------------------YTLSSGNLSSAMQLDTAAIWSLNLLPDPTMKSSSRLGGSVLDILNR 217
[Close]
BLAST of mRNA_L-elsbetiae_contig6977.15755.1 vs. uniprot
Match: UPI0018D7A8D4 (DNA mismatch repair protein Msh2-like n=1 Tax=Patiria miniata TaxID=46514 RepID=UPI0018D7A8D4)

HSP 1 Score: 79.3 bits (194), Expect = 4.600e-13
Identity = 65/192 (33.85%), Postives = 95/192 (49.48%), Query Frame = 3 
Query:  231 GMEDKVRWTLVVYEFLDNDQFSNLDTLMLQLAPGRCLLSLDAGAIEGKPRGDMAKVLAAMERLDVTVKDVKATHFKTDDVGARMRALLGDASLAQHSLAT----EQPVGTACLAALMGHLERKGGDGXXXXXXXXXXXXXXSPEMAPSYALVQGTLQKHLRLDSAAAAAVTLLPDPT-APHQYGSLYGVLNR 791
            G  D     L V +F DN+QFSNL+ L++QL P  CLL   +G  EG    + AK+ + +ER  + V + K   F T DV   +  LL  AS  Q + A+    E+    A LAAL+ +LE  G +                      + L    L ++++LDSAA  A++LLP P  A ++  SL G+LN+
Sbjct:  163 GYADATLRELAVCQFADNEQFSNLEALLVQLGPKECLLPAQSG--EGA--AESAKLKSVLERSGLLVTERKKAEFGTKDVEQDLNRLLKGASEEQRNAASLAEMEKLHAMASLAALIKYLELLGDESNFN-----------------QFRLKTFDLSQYMKLDSAAVRALSLLPSPQDAGNKNASLLGLLNK 333
[Close]
BLAST of mRNA_L-elsbetiae_contig6977.15755.1 vs. uniprot
Match: A0A556TJE3_BAGYA (F-box only protein 11 n=2 Tax=Clupeocephala TaxID=186625 RepID=A0A556TJE3_BAGYA)

HSP 1 Score: 79.3 bits (194), Expect = 5.130e-13
Identity = 70/234 (29.91%), Postives = 104/234 (44.44%), Query Frame = 3 
Query:  117 GSSGGKDEVDRPIVALKFKLAKH-QRTVGVAARLPRQREGMEDKVRWTLVVYEFLDNDQFSNLDTLMLQLAPGRCLLSLDAGAIEGKPRGDMAKVLAAMERLDVTVKDVKATHFKTDDVGARMRALL----GDASLAQHSLATEQPVGTACLAALMGHLERKGGDGXXXXXXXXXXXXXXSPEMAPSYALVQGTLQKHLRLDSAAAAAVTLLP----DPTAPHQYGSLYGVLNR 791
            GS GG  E    +V ++       QR VGV         G  D +   L V EF DNDQFSNL+ L++Q+ P  C+L        G   GD+ K+   ++R  +   D K T F T D+   +  LL    G+ + +      E+ +  +CLAA++ +LE    D                     S+ +    L +++RLD+AA  A+ L      DPT  H   SL G+LN+
Sbjct:  135 GSGGGLGEGAAGVVGVRIGTGSDGQRVVGV---------GYVDSILRKLGVCEFPDNDQFSNLEALLVQIGPKECVLPA------GDAAGDLGKLKQVVQRGGILFSDRKKTEFTTRDIVQDLNRLLKAPKGEMASSAALPEMEKQIAMSCLAAVIKYLELLSDDANFG-----------------SFKMTTFDLNQYMRLDNAAVQALNLFQASSDDPTGTH---SLAGLLNK 333
[Close]
BLAST of mRNA_L-elsbetiae_contig6977.15755.1 vs. uniprot
Match: A0A3N2PMJ7_9PEZI (DNA mismatch repair protein msh-2 n=1 Tax=Sodiomyces alkalinus F11 TaxID=1314773 RepID=A0A3N2PMJ7_9PEZI)

HSP 1 Score: 77.8 bits (190), Expect = 1.520e-12
Identity = 67/223 (30.04%), Postives = 99/223 (44.39%), Query Frame = 3 
Query:  126 GGKDEVDRPIVALK-FKLAKHQRTVGVAARLPRQREGMEDKVRWTLVVYEFLDNDQFSNLDTLMLQLAPGRCLLSLDAGAIEGKPRGDMAKVLAAMERLDVTVKDVKATHFKTDDVGARMRALLGDASLAQHSLATEQPVGTACLAALMGHLERKGGDGXXXXXXXXXXXXXXSPEMAPSYALVQGTLQKHLRLDSAAAAAVTLLPDPTAPHQYGSLYGVLNR 791
            GG+ E    I+A+K    A   R+VGV       RE         L V EFLDND +SN ++L++QL    CL+ +D G  E  P  D+AK+   ++   V + +  A+ F   D+   +  LL D   A     T+  +     AAL+ +L                      P     Y L Q  L + ++LD+AA  A+ L+P P    +  SLYG+LN 
Sbjct:  127 GGQFEAAPMILAVKVMSKAAEARSVGVCFADASVRE---------LGVSEFLDNDLYSNFESLLIQLGVRECLIQVDRGEKEKDP--DLAKLRQIIDNCGVAISERPASDFGIKDIEQDLARLLKDEKAATLMPQTDLNLAMGSAAALIKYL-----------------GVLHDPSNFGQYQLYQHDLAQFMKLDAAALKALNLMPGPRDGSKTMSLYGLLNH 321
[Close]
BLAST of mRNA_L-elsbetiae_contig6977.15755.1 vs. uniprot
Match: A0A7J6APT8_AMEME (MUTSd domain-containing protein n=1 Tax=Ameiurus melas TaxID=219545 RepID=A0A7J6APT8_AMEME)

HSP 1 Score: 75.9 bits (185), Expect = 5.440e-12
Identity = 68/234 (29.06%), Postives = 103/234 (44.02%), Query Frame = 3 
Query:  117 GSSGGKDEVDRPIVALKFKLAKH-QRTVGVAARLPRQREGMEDKVRWTLVVYEFLDNDQFSNLDTLMLQLAPGRCLLSLDAGAIEGKPRGDMAKVLAAMERLDVTVKDVKATHFKTDDVGARMRALL----GDASLAQHSLATEQPVGTACLAALMGHLERKGGDGXXXXXXXXXXXXXXSPEMAPSYALVQGTLQKHLRLDSAAAAAVTLLP----DPTAPHQYGSLYGVLNR 791
            GS GG  E    +V ++       QR VGV         G  D +   L V EF DNDQFSNL+ L++Q+ P  C+L        G   GD+ K+   ++R  + + D K   F T D+   +  LL    G+   +      E+ +  +CLAA++ +LE    +                     S+ +    L +++RLD+AA  A+ L      DPT  H   SL G+LN+
Sbjct:  136 GSGGGLGEGAAGVVGIRVGTGSDGQRVVGV---------GYVDSILRKLGVCEFPDNDQFSNLEALLVQIGPKECVLPA------GDTVGDLGKLRQVVQRGGILLSDRKKAEFTTKDIVQDLNRLLKARKGETVSSAALPEMEKQIAVSCLAAVIKYLELLSDEANFS-----------------SFKMTTFDLSQYMRLDNAAVQALNLFQAASDDPTGTH---SLAGLLNK 334
[Close]
BLAST of mRNA_L-elsbetiae_contig6977.15755.1 vs. uniprot
Match: A0A5C6GMW7_9HYPO (MutS-like protein n=15 Tax=Clavicipitaceae TaxID=34397 RepID=A0A5C6GMW7_9HYPO)

HSP 1 Score: 75.5 bits (184), Expect = 9.190e-12
Identity = 67/223 (30.04%), Postives = 97/223 (43.50%), Query Frame = 3 
Query:  126 GGKDEVDRPIVALKFKL-AKHQRTVGVAARLPRQREGMEDKVRWTLVVYEFLDNDQFSNLDTLMLQLAPGRCLLSLDAGAIEGKPRGDMAKVLAAMERLDVTVKDVKATHFKTDDVGARMRALLGDASLAQHSLATEQPVGTACLAALMGHLERKGGDGXXXXXXXXXXXXXXSPEMAPSYALVQGTLQKHLRLDSAAAAAVTLLPDPTAPHQYGSLYGVLNR 791
            GG+ E    IVA+K    A   R VGV       RE         L V EFLDND +SN ++L++QL    C++ LD G  E  P  ++AK+   ++   V + +  A  F T D+   +  LL D         T+  +     A+L+ +L                      P     Y L Q  L + ++LD+AA  A+ L+P P    +  SLYGVLN 
Sbjct:  127 GGQIESAPMIVAVKISARASEARKVGVCFADASVRE---------LGVSEFLDNDLYSNFESLLIQLGVRECIIQLDKGEKEKDP--ELAKLRQIIDNCGVAIAERPAGDFGTRDIEQDLARLLKDDKSVNLLPQTDLKLAMGSAASLIKYL-----------------GVLQDPSNFGQYQLYQHDLAQFMKLDAAALKALNLMPGPRDGSKTMSLYGVLNH 321
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6977.15755.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L7H3_9PHAE2.580e-11178.21DNA_MISMATCH_REPAIR_2 domain-containing protein n=... [more]
A0A835YUY7_9STRA4.170e-3539.55Muts protein-like protein 2A n=1 Tax=Tribonema min... [more]
A0A7S2UZG6_9STRA1.420e-2750.88Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A8K1FEG9_PYTOL1.160e-2134.20Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A2D4BV25_PYTIN4.210e-1832.43DNA_MISMATCH_REPAIR_2 domain-containing protein n=... [more]
UPI0018D7A8D44.600e-1333.85DNA mismatch repair protein Msh2-like n=1 Tax=Pati... [more]
A0A556TJE3_BAGYA5.130e-1329.91F-box only protein 11 n=2 Tax=Clupeocephala TaxID=... [more]
A0A3N2PMJ7_9PEZI1.520e-1230.04DNA mismatch repair protein msh-2 n=1 Tax=Sodiomyc... [more]
A0A7J6APT8_AMEME5.440e-1229.06MUTSd domain-containing protein n=1 Tax=Ameiurus m... [more]
A0A5C6GMW7_9HYPO9.190e-1230.04MutS-like protein n=15 Tax=Clavicipitaceae TaxID=3... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6977contigL-elsbetiae_contig6977:514..5684 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score349.0
Seed ortholog evalue1.8e-93
Seed eggNOG ortholog2880.D8LDL8
Preferred nameMSH2
KEGG koko:K08735
KEGG Pathwayko01524,ko03430,ko05200,ko05210,map01524,map03430,map05200,map05210
KEGG ModuleM00295
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000018,GO:0000166,GO:0000217,GO:0000400,GO:0000403,GO:0000404,GO:0000406,GO:0003674,GO:0003676,GO:0003677,GO:0003684,GO:0003690,GO:0003824,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005886,GO:0006139,GO:0006259,GO:0006281,GO:0006290,GO:0006298,GO:0006301,GO:0006310,GO:0006311,GO:0006725,GO:0006807,GO:0006915,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007154,GO:0007165,GO:0008094,GO:0008144,GO:0008150,GO:0008152,GO:0008219,GO:0008630,GO:0009892,GO:0009987,GO:0010520,GO:0010564,GO:0010605,GO:0010639,GO:0010948,GO:0012501,GO:0016020,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0019219,GO:0019222,GO:0022402,GO:0022414,GO:0023052,GO:0030554,GO:0030983,GO:0031323,GO:0031324,GO:0032135,GO:0032137,GO:0032138,GO:0032300,GO:0032301,GO:0032302,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0033043,GO:0033554,GO:0034641,GO:0035556,GO:0035639,GO:0035822,GO:0036094,GO:0040020,GO:0042623,GO:0042771,GO:0042802,GO:0042803,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043570,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045128,GO:0045786,GO:0045835,GO:0045910,GO:0045934,GO:0046483,GO:0046983,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0051052,GO:0051053,GO:0051128,GO:0051129,GO:0051171,GO:0051172,GO:0051276,GO:0051321,GO:0051445,GO:0051447,GO:0051716,GO:0051726,GO:0051783,GO:0051784,GO:0060255,GO:0060631,GO:0061982,GO:0065007,GO:0071704,GO:0071840,GO:0071944,GO:0072331,GO:0072332,GO:0080090,GO:0090304,GO:0097159,GO:0097190,GO:0097193,GO:0097367,GO:0110029,GO:1901265,GO:1901360,GO:1901363,GO:1903046,GO:1990391,GO:2000241,GO:2000242
EggNOG free text desc.negative regulation of reciprocal meiotic recombination
EggNOG OGsCOG0249@1,KOG0219@2759
Ec32 ortholog descriptionMutS protein homolog 2A
Ec32 orthologEc-15_000100.1
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03400
Exons4
Model size794
Cds size705
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6977.15755.1prot_L-elsbetiae_contig6977.15755.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6977 514..5595 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816773.2317967-CDS-L-elsbetiae_contig6977:513..7501622816773.2317967-CDS-L-elsbetiae_contig6977:513..750Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6977 514..750 -
1691683802.2631521-CDS-L-elsbetiae_contig6977:513..7501691683802.2631521-CDS-L-elsbetiae_contig6977:513..750Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6977 514..750 -
1622816773.2449656-CDS-L-elsbetiae_contig6977:1899..20611622816773.2449656-CDS-L-elsbetiae_contig6977:1899..2061Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6977 1900..2061 -
1691683802.2830539-CDS-L-elsbetiae_contig6977:1899..20611691683802.2830539-CDS-L-elsbetiae_contig6977:1899..2061Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6977 1900..2061 -
1622816773.256604-CDS-L-elsbetiae_contig6977:3762..39121622816773.256604-CDS-L-elsbetiae_contig6977:3762..3912Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6977 3763..3912 -
1691683802.2919116-CDS-L-elsbetiae_contig6977:3762..39121691683802.2919116-CDS-L-elsbetiae_contig6977:3762..3912Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6977 3763..3912 -
1622816773.268196-CDS-L-elsbetiae_contig6977:5439..55951622816773.268196-CDS-L-elsbetiae_contig6977:5439..5595Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6977 5440..5595 -
1691683802.3116992-CDS-L-elsbetiae_contig6977:5439..55951691683802.3116992-CDS-L-elsbetiae_contig6977:5439..5595Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6977 5440..5595 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816773.2815347-UTR-L-elsbetiae_contig6977:5595..56841622816773.2815347-UTR-L-elsbetiae_contig6977:5595..5684Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6977 5596..5684 -
1691683802.3245614-UTR-L-elsbetiae_contig6977:5595..56841691683802.3245614-UTR-L-elsbetiae_contig6977:5595..5684Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6977 5596..5684 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6977.15755.1

>prot_L-elsbetiae_contig6977.15755.1 ID=prot_L-elsbetiae_contig6977.15755.1|Name=mRNA_L-elsbetiae_contig6977.15755.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=235bp
MSDSPLRALGSSGGKDEVDRPIVALKFKLAKHQRTVGVAARLPRQREGME
DKVRWTLVVYEFLDNDQFSNLDTLMLQLAPGRCLLSLDAGAIEGKPRGDM
AKVLAAMERLDVTVKDVKATHFKTDDVGARMRALLGDASLAQHSLATEQP
VGTACLAALMGHLERKGGDGDVDNEEGEGEGEGESPEMAPSYALVQGTLQ
KHLRLDSAAAAAVTLLPDPTAPHQYGSLYGVLNR*
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mRNA from alignment at L-elsbetiae_contig6977:514..5684-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6977.15755.1 ID=mRNA_L-elsbetiae_contig6977.15755.1|Name=mRNA_L-elsbetiae_contig6977.15755.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=5171bp|location=Sequence derived from alignment at L-elsbetiae_contig6977:514..5684- (Laminarionema elsbetiae ELsaHSoW15)
GTACTGCTCTAGCCACACGCCACACACGCCACGGCTCAGGCATTTGTCAA
CTACACGACCGTCTGTAGGACTCAGTGTGCGAAACGATAATGTCGGACTC
TCCGCTGCGAGCGTTAGGTTCATCGGGAGGGAAGGATGAGGTCGATCGCC
CGATCGTTGCTCTCAAGTTCAAACTTGCCAAGCACCAAAGGACGGTGGGC
GTGGCGGCGAGGTTACCCCGGCAGCGGGAAGGCATGGAAGATAAGGTAGG
TGCTGGTGCTGATTTGGTTCTTCTTAGTTGCGTTGACAGTGTTTTTTCGT
GTGTGTGCGCGCGCCCGCGCATCATGATTGTGAAGAAAAATAATTCAAAT
CCGGATGATGTTCCCTGTTGCGATGCCCCCGGCTCCCGCGGACTTTGGCC
GCGGATCAAACCGGATGTTGTTGCGATACATATACACAACAGGCATAGCA
TGCACAACCCCTGGAGTTATCCTTTAAGCAGCACCTCCCCTAAACAGCAG
CATTTTTCGTTTGAACCCCGCCCACGCCCTGAGACCGGGGCACAAGAGCT
GCTGGAACGGACACTCTTGAGTGGTACGCATCCAAAGAACACGCCACCGT
ATGTATGTACATAAATGACACAACACCCCCGTGGACCGATTTTTCAAAAG
CTCGGTTACTCCAACGAGTAGGTATGATTCTAATACCAAGCGGCACGTTT
TCGGACAGCTATTGATGAGGTGTTTGTTTCCAACGCCGCCCTGTTCGGGA
CTGAGACTTTTCTCGCTGTGGAGTACTTTGAGCTTTGAAAATCGGTCCAT
ATGTTGCGCGAAAGGCATGAGACCCAGACCACATGTAGGTATGTGCAGGA
GGGGGTTTTTTAGTAGATTCCGTAATCATGCGGGTTATTGCACCCCCGTG
CTAGCGTTTTTCTATAGCGTATTTCTCCACAACACTGACTGATACCTCTC
TGGAGAGCCCCCGACGAGACGTACCGAAAACCACCCTTTAAACCACCCTT
TTCGGCAGTGGCACCCTCCTGGTTGTGGAGAAAAACGCTATAGAAAAACG
CCGACACGGGGTTGCGATAACCCGCATGATTACGGTCTCGTATAAATACG
GCGGTATTGAGTGAGACTACTACATACATATGTACATACAATACATACAG
AGACGAGGTATCGATCGGTGAATGTAGTCGTCACCCCGCTGTTTGCCCGC
CCACTTTCTCCGCAATTGGTATCTCGCTCTCTCTCTCCCGTGAACACTCT
TCTCGGTCCTGATCTCGCTCTTCTCTCCTCGAGTCAAAAACGTATTGAGT
TACGCCGGGTGGTGCGAACAAAAACCCACTCCCGCTCGCGACCTTTCTGA
AAAAAAAAGTTCCAAAGTCAGTCGTTCGCGCAAGCGCTCGCTCGCCCGCT
ACATACATCTATGTGACCCCGGTTGGGTCGTATGGCTAGAGTAGAAGTGG
AGGATGGGGGCCAGAGGGGCAGACGACAAAATCCAATAATGGGCAGACAA
AAAAAAAAACAAAAAAAATCCTGCATCCGATGCGTTGTTTAAAGCTGTTG
GTGCTTGCTTGGATTACGCAAGTCGGAACAATCCGACCACAAAAGGGGCA
CATGCAAACGCGCTGTGCACACCTTTTACCTACACATGGCATGTTTGGCA
TGCCGCCCCACGGCACAAACCCGCTCGCACGCGGCGGGGCTTGCCCGATT
TTGCCAATACTGCCTCTGCCGCATCTGCTGATCATCCTGCTGCCTTCCTC
GCCGCCGTCGCCGCTGCTGCAGGTGCGCTGGACGCTGGTGGTATACGAAT
TCCTGGACAACGACCAGTTCAGCAATCTCGACACGCTCATGCTTCAGCTC
GCGCCAGGCCGGTGCCTGCTGTCGCTGGACGCGGGGGCCATCGAGGGGAA
ACCCCGGGGTGACATGGCCAAGGTATTTACCGTAGGACTCGACTCGGCCC
CAGTCTCGAACAGAAAGAACAGAGCCGCATTATTTTCCGCTTTTGCGGGG
CTGTGGGTGTCGAACACGGCGGGCGCTGCCGTGGGTTAGGAGGAGCGAGC
GCCTCGATGATGCCAATGGTGTATTGTAGAAATAATACAACGATGTGGTT
TACTCCTAGATATGTATGTAACGCCCCGCGCGAGAGGTTAGGTGGTCAGT
TGTTCAGCGGCGGAAGAACGGCGTACCTTTTCTTAGGTTAAGTATAAGTT
AGCCTGTGACCACGGGAATTGACCGCATCAGGTGTTGGATTAGTACGGAC
ATTGAGAGGTACTGGATGGAGAGACCGGAACGGTTTTTAATGTGAAGACA
GCATACATACAGAACGGCCGCGCGGTGGGTTTAATGGAGACAAGAGAACT
AGCAGCGTGGTATGTATCTTGTACATACCAAGGCGCAGCAGTGACACGGT
ATAAGTGGAGACAAGATGACTAGCGTGGTGTGTTGTACCAAGGCTCAGCA
GTACCGTCGTACTGCGGCATCTAGTGAAGACAAGAGATAAGTTAACCATT
AATATTGTAGCGTGATTTGTTTGTATGTACCAGGCACGGCAGGGATACGG
TGCGGTGAAAAGAAGAGAATACTGTGTGTAGCCTGCTTGCTTGTTTCGAC
GAAGCTCTCCTCTTTATTATCTTTCTGAAATCTTTGCAGGGGAGATGTTG
AATTCTTCTGATATTCAGGTTGTTTTTTCTGCTCGCTTCGCCAAATATTA
CGTCTCTGTATGGAATACCGTTTGAACCCCATATCGAGTCTTTGCTCTAG
TATGGGTTAGGTTCCATCTTTGATTCTTTGTTTTATTTTAAAATAAATCG
GGAAAATCACAGAAGTACATACTCCGTGGTGAAATTACAATTCAATATAT
ACAAAGATACAAAGTGATAAAGAGTATCGGTCCGGCCGAGGTAGAAAAAT
CACCTAAAATATTGATTTTGTGTGAGTATATCTTGGGATGGGAAAAAAAG
GGGGTTAGTATGCCTACAACAGATCCCTCTGGAACGATATTTTCACAGAC
CGGACGTAGACTGCTGACATTTGTATACATTAATTAAAAATATTGAGTAT
GTCTTGGATGGAAAAAAAGGGGAGGTTAGTATGCCTACAACAGTTCCCTC
TGGAACGACCTCTTCACAGACTGGGCGTAAACCCTGCTGGCATTCGTTTG
TACCATGTGTGTGTGTGTGTGTGTGTGTGTCCTTCCCATTTATTTTGGCG
ACAGTCCCCCAAATGGAGACGTGTACTACACCTTGCGGTGTACTTAGAGG
TACTACACTTTGCAGTGCATTTTTCTGTACAAGTAGAACCAACCGGGGTC
ACACAGGAGGAGGTGAACCCTGGGGCTTTTTTCTTCTTTTTATTTTCTTT
TTTTTGCCCCACCTTCCTCCTGCGGTTCTTGCCCTGGGTTTTATCGCGAG
AAGGGTTCAGCTGTCCCTTTCCCTCGTCAACGTGATTACGCCGAATTTTG
GTGCTCACGAGCTTTTCAGCTTTTATCGCTTTCACCTGCAAAGCCGCAAA
AGAAAACACTTCTGCTTGGGATTGAACTCCAGAGTTTGCTGCTAGTGGTA
TGCATCAATTAAAATATAAAAAAAAGGCTCCCCTGCACAAATCTCTTTCC
TCTTCTTCTCTTTCTCTGCCCAGGTTCTCGCTGCGATGGAGCGGCTAGAC
GTGACGGTGAAGGACGTCAAGGCGACGCACTTCAAGACCGACGACGTCGG
CGCGAGGATGCGGGCGCTCTTGGGGGACGCCTCCCTGGCCCAGCACTCCC
TTGCCACCGAGCAGCCCGTGGGCACCGCCTGCCTCGTGAGTGTGTGTGTT
TTTTTTTCTCAAATATCGTTTCTTGGCTGCTATTTATTTATGTACTGGTA
CCGTAGGTGACATAAAGATAAGACATCCCCTGGACCGAAATTGAGAGCTT
GGTTATTCCGCAACGAATGCGATTCTAACCACAATCGCCACATTTTCGGA
CAGCTCTCGACGAGATCTTTCCAACGCCGCCCTTTTTCGGGACTGACGCT
CAGCTTGCTGTGGAGTACTTGAGCTTTGAAAATCGGTCCAGGGGGTGTGT
TATCTTATGTCACCTACGGTATGTATCTACAAACAGACGCATTCACATCT
GGTGGTCCGCCACCGCCACCGCCACCGCCACCGACCAGTGCTTTGTCCCT
TGTGTGTGGCCGCCGCCGCTGCTGCTGCTGCTGTCTCTTGGTGTGGTGTT
GTTGCTCACTCCTTGGTGGGAGTTTTGTTTTCCTGCTACTCTGCCTTCGC
ACACACAGCAGCCAGTTCTCGCACACGGCCAACTATTCTATCTATACACA
TAAGTGTAGTACCTCTAAGTACACCGCTGTAGTACACGTCTCCACTTGGG
GGGACTCGCCAAAATAAATAGGAAGGACACACACACACACACACACACAC
ACACACACACACACACACACTTCGGTCACTGATGTTACTACTGTTACTAT
CTGTCTGTTTCCACGCGTGTTTAATACCCTCCTGTCCGTTCGTTCGAAAA
GGAATGCCGGTGCGCGAGGCATGCCACGAGTGAGTGAGTGCCCGCGGCGA
ATCAAAAAACGCACACGATGTTTTAAGTACCGTAAAAACGACAATTATTT
TTGATGGCTCGTGGATACCGCCTGTGTTGGGGGCGACGCACCTCCTCTCG
ACGCAAGGCAGCTCTCTGTCTCTCTCCCTCCCTCCCTCTCTCACGCGCGC
GTGGTTTGCTTTTAATTGATGCATACAAATGTCAGCAGTCTACGTTCAGT
CTGCGAAAAAACGTCGTTCCAGAGGGACTATTGTAGGCATACTAACCCCC
CTTTTCTCCCGGTCCAAGATGTACTCACTCGCACAAAATGCGTACTCCAT
GCAACGTATATATAAATACAGCAGCAGTCGTTCGCTGGTGCTTTTGTGTG
TGTTCATCTATCCCCTGCTGGCCCTTTATATCAGGCGGCGTTGATGGGCC
ACCTCGAGCGAAAGGGCGGCGACGGTGACGTCGACAACGAGGAGGGGGAG
GGGGAGGGGGAGGGGGAATCTCCGGAGATGGCCCCGTCCTACGCGCTGGT
CCAGGGCACCCTCCAGAAGCACCTGCGGCTCGACAGCGCCGCGGCCGCCG
CTGTCACCCTGCTCCCCGACCCCACCGCCCCGCACCAGTACGGCAGCCTG
TACGGTGTCCTCAACAGGTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6977:514..5684-

>mRNA_L-elsbetiae_contig6977.15755.1 ID=mRNA_L-elsbetiae_contig6977.15755.1|Name=mRNA_L-elsbetiae_contig6977.15755.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1410bp|location=Sequence derived from alignment at L-elsbetiae_contig6977:514..5684- (Laminarionema elsbetiae ELsaHSoW15)
ATGTCGGACTCTCCGCTGCGAGCGTTAGGTTCATCGGGAGGGAAGGATGA
GGTCGATCGCCCGATCGTTGCTCTCAAGTTCAAACTTGCCAAGCACCAAA
GGACGGTGGGCGTGGCGGCGAGGTTACCCCGGCAGCGGGAAGGCATGGAA
GATAAGATGTCGGACTCTCCGCTGCGAGCGTTAGGTTCATCGGGAGGGAA
GGATGAGGTCGATCGCCCGATCGTTGCTCTCAAGTTCAAACTTGCCAAGC
ACCAAAGGACGGTGGGCGTGGCGGCGAGGTTACCCCGGCAGCGGGAAGGC
ATGGAAGATAAGGTGCGCTGGACGCTGGTGGTATACGAATTCCTGGACAA
CGACCAGTTCAGCAATCTCGACACGCTCATGCTTCAGCTCGCGCCAGGCC
GGTGCCTGCTGTCGCTGGACGCGGGGGCCATCGAGGGGAAACCCCGGGGT
GACATGGCCAAGGTGCGCTGGACGCTGGTGGTATACGAATTCCTGGACAA
CGACCAGTTCAGCAATCTCGACACGCTCATGCTTCAGCTCGCGCCAGGCC
GGTGCCTGCTGTCGCTGGACGCGGGGGCCATCGAGGGGAAACCCCGGGGT
GACATGGCCAAGGTTCTCGCTGCGATGGAGCGGCTAGACGTGACGGTGAA
GGACGTCAAGGCGACGCACTTCAAGACCGACGACGTCGGCGCGAGGATGC
GGGCGCTCTTGGGGGACGCCTCCCTGGCCCAGCACTCCCTTGCCACCGAG
CAGCCCGTGGGCACCGCCTGCCTCGTTCTCGCTGCGATGGAGCGGCTAGA
CGTGACGGTGAAGGACGTCAAGGCGACGCACTTCAAGACCGACGACGTCG
GCGCGAGGATGCGGGCGCTCTTGGGGGACGCCTCCCTGGCCCAGCACTCC
CTTGCCACCGAGCAGCCCGTGGGCACCGCCTGCCTCGCGGCGTTGATGGG
CCACCTCGAGCGAAAGGGCGGCGACGGTGACGTCGACAACGAGGAGGGGG
AGGGGGAGGGGGAGGGGGAATCTCCGGAGATGGCCCCGTCCTACGCGCTG
GTCCAGGGCACCCTCCAGAAGCACCTGCGGCTCGACAGCGCCGCGGCCGC
CGCTGTCACCCTGCTCCCCGACCCCACCGCCCCGCACCAGTACGGCAGCC
TGTACGGTGTCCTCAACAGGTGAGCGGCGTTGATGGGCCACCTCGAGCGA
AAGGGCGGCGACGGTGACGTCGACAACGAGGAGGGGGAGGGGGAGGGGGA
GGGGGAATCTCCGGAGATGGCCCCGTCCTACGCGCTGGTCCAGGGCACCC
TCCAGAAGCACCTGCGGCTCGACAGCGCCGCGGCCGCCGCTGTCACCCTG
CTCCCCGACCCCACCGCCCCGCACCAGTACGGCAGCCTGTACGGTGTCCT
CAACAGGTGA
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