mRNA_L-elsbetiae_contig697.15744.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig697.15744.1
Unique NamemRNA_L-elsbetiae_contig697.15744.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig697.15744.1 vs. uniprot
Match: A0A6H5L5B2_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L5B2_9PHAE)

HSP 1 Score: 83.2 bits (204), Expect = 3.260e-17
Identity = 46/58 (79.31%), Postives = 50/58 (86.21%), Query Frame = 1 
Query:   10 NGMSAKLSDLIAVGLGLTEQASKAIIDVKAAGAEDLKVKGHTKEGEPEPVTVADHNSN 183
            +G SAKLSDLIAVGLGLTE AS+ I DVKAAGAE+L+VKG TKEG  EPVTVAD NSN
Sbjct:   67 SGGSAKLSDLIAVGLGLTELASQEIKDVKAAGAEELRVKGLTKEGVEEPVTVADTNSN 124
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BLAST of mRNA_L-elsbetiae_contig697.15744.1 vs. uniprot
Match: A0A7S2UWD2_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UWD2_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 6.560e-9
Identity = 34/59 (57.63%), Postives = 44/59 (74.58%), Query Frame = 1 
Query:   25 KLSDLIAVGLGLTEQASKAIIDVKAAGAE--DLKVKGHTKEGEPEPVTVADHNSNNASL 195
            +LS+L+AVGL LTEQA++AI  VKA G+E   L+VKG T EG  EPVT AD +SN+  +
Sbjct:   64 RLSELLAVGLDLTEQANQAIRQVKAGGSEAQHLRVKGKTAEGVDEPVTEADASSNSVFI 122
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BLAST of mRNA_L-elsbetiae_contig697.15744.1 vs. uniprot
Match: A0A835YRT6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRT6_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 2.310e-8
Identity = 32/58 (55.17%), Postives = 39/58 (67.24%), Query Frame = 1 
Query:   10 NGMSAKLSDLIAVGLGLTEQASKAIIDVKAAGAEDLKVKGHTKEGEPEPVTVADHNSN 183
            NG +  LSD++AVGLGL+EQA+  I  VK    E++ VKG T EG  EPVT AD  SN
Sbjct:   61 NGGTVMLSDVLAVGLGLSEQAAAVIKQVKRQHQENMNVKGKTAEGVDEPVTDADKQSN 118
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BLAST of mRNA_L-elsbetiae_contig697.15744.1 vs. uniprot
Match: A0A835YUA7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUA7_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 1.950e-7
Identity = 28/53 (52.83%), Postives = 38/53 (71.70%), Query Frame = 1 
Query:   25 KLSDLIAVGLGLTEQASKAIIDVKAAGAEDLKVKGHTKEGEPEPVTVADHNSN 183
            +LS+++AVG+GL+ QA+  I +VK    E++ VKGHT EG  EPVT AD  SN
Sbjct:   14 QLSEILAVGMGLSAQAAGVIKEVKRLHLENMHVKGHTAEGVAEPVTDADQRSN 66
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig697.15744.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5L5B2_9PHAE3.260e-1779.31Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S2UWD2_9STRA6.560e-957.63Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A835YRT6_9STRA2.310e-855.17Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YUA7_9STRA1.950e-752.83Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig697contigL-elsbetiae_contig697:858..2300 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score83.6
Seed ortholog evalue3.8e-14
Seed eggNOG ortholog2880.D8LQJ2
Preferred nameIMPAD1
KEGG rclassRC00078
KEGG koko:K15759
KEGG ReactionR00188,R00508,R01185,R01186,R01187
KEGG Pathwayko00562,ko00920,ko01100,ko01120,ko04070,map00562,map00920,map01100,map01120,map04070
KEGG ModuleM00131
Hectar predicted targeting categoryother localisation
GOsGO:0001501,GO:0001503,GO:0001958,GO:0002062,GO:0002063,GO:0003674,GO:0003824,GO:0004441,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005794,GO:0005796,GO:0005829,GO:0006022,GO:0006029,GO:0006082,GO:0006139,GO:0006163,GO:0006629,GO:0006644,GO:0006650,GO:0006661,GO:0006725,GO:0006753,GO:0006790,GO:0006793,GO:0006796,GO:0006807,GO:0007154,GO:0007165,GO:0007275,GO:0008150,GO:0008152,GO:0008252,GO:0008254,GO:0008441,GO:0008610,GO:0008654,GO:0008934,GO:0009058,GO:0009100,GO:0009117,GO:0009150,GO:0009259,GO:0009653,GO:0009790,GO:0009791,GO:0009887,GO:0009888,GO:0009987,GO:0012505,GO:0016311,GO:0016312,GO:0016604,GO:0016787,GO:0016788,GO:0016791,GO:0019538,GO:0019637,GO:0019693,GO:0023052,GO:0030154,GO:0030203,GO:0030204,GO:0030326,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0033865,GO:0033875,GO:0034032,GO:0034035,GO:0034641,GO:0035107,GO:0035108,GO:0035113,GO:0036075,GO:0042578,GO:0042733,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044260,GO:0044281,GO:0044422,GO:0044424,GO:0044428,GO:0044431,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0045017,GO:0046474,GO:0046483,GO:0046486,GO:0046488,GO:0048468,GO:0048513,GO:0048598,GO:0048705,GO:0048731,GO:0048736,GO:0048856,GO:0048869,GO:0050427,GO:0050654,GO:0050789,GO:0050794,GO:0050896,GO:0051216,GO:0051716,GO:0052745,GO:0052834,GO:0055086,GO:0060173,GO:0060348,GO:0060349,GO:0060350,GO:0061448,GO:0065007,GO:0070013,GO:0071704,GO:0072521,GO:0090407,GO:1901135,GO:1901360,GO:1901564,GO:1901576,GO:1903510
EggNOG free text desc.inositol monophosphate 3-phosphatase activity
EggNOG OGsCOG1218@1,KOG3853@2759
EC3.1.3.25,3.1.3.7
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Exons2
Model size210
Cds size195
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig697.15744.1prot_L-elsbetiae_contig697.15744.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig697 873..2300 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816772.0935063-UTR-L-elsbetiae_contig697:857..8721622816772.0935063-UTR-L-elsbetiae_contig697:857..872Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig697 858..872 +
1691683801.4270933-UTR-L-elsbetiae_contig697:857..8721691683801.4270933-UTR-L-elsbetiae_contig697:857..872Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig697 858..872 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816772.1039674-CDS-L-elsbetiae_contig697:872..9351622816772.1039674-CDS-L-elsbetiae_contig697:872..935Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig697 873..935 +
1691683801.44075-CDS-L-elsbetiae_contig697:872..9351691683801.44075-CDS-L-elsbetiae_contig697:872..935Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig697 873..935 +
1622816772.1145623-CDS-L-elsbetiae_contig697:2168..23001622816772.1145623-CDS-L-elsbetiae_contig697:2168..2300Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig697 2169..2300 +
1691683801.4499936-CDS-L-elsbetiae_contig697:2168..23001691683801.4499936-CDS-L-elsbetiae_contig697:2168..2300Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig697 2169..2300 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig697.15744.1

>prot_L-elsbetiae_contig697.15744.1 ID=prot_L-elsbetiae_contig697.15744.1|Name=mRNA_L-elsbetiae_contig697.15744.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=65bp
MSAKLSDLIAVGLGLTEQASKAIIDVKAAGAEDLKVKGHTKEGEPEPVTV
ADHNSNNASLCIGT*
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mRNA from alignment at L-elsbetiae_contig697:858..2300+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig697.15744.1 ID=mRNA_L-elsbetiae_contig697.15744.1|Name=mRNA_L-elsbetiae_contig697.15744.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1443bp|location=Sequence derived from alignment at L-elsbetiae_contig697:858..2300+ (Laminarionema elsbetiae ELsaHSoW15)
GCTAGCCCAAATGGTATGTCGGCGAAGCTTAGCGACCTGATCGCGGTAGG
TCTGGGGCTCACTGAACAGGCATCGAAGGTGAGAGAGGGACACATAGACA
GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGGGGGGGGGGGGG
GGGGGGGGGGGGGGGGGGGGGGGAGGGGGGGGGGGGGGGGGGGGGGAGAG
AGGGGGAGAGGTGGTGAGCGGGAAGATTGGGGGCCCAAGAGGATGACTAG
GTCGACGAGCGCACCGAACAAGAGAAGCGTGCTGCTGCAGCTCCGCTTCA
CGTCGATAGTGAAGGCCACCTCCAGCTTGACGCACGCACTCTTAAGTTAA
ATAAATAGTGCTTGTTTGTTCGACGACGGAAATTTTGGCGAGGATCGTAA
AATACCCATGGTGTATCGACGGAGCCCCTTCGTTTCGGCGGTATATGTTA
GTGCTTTTCCCGGCTGGTTCTCTACGGCGCTTGTTGTTCATGTCCCCCCA
GAAAATAGCAGTATACATAACCTCATTGCTGCCGCCCGGCGTATTGGTGG
GTGGTGGAGATGGTCGCAGCTTTACGTGCTCGTGATGTTCGGTCAGTGGC
GGAAACCATGGCCTTGCCGAAAGAAACGGCCGCGCTTGTATGGGCATACA
TACATACACATAGTGGGGCAGACGACGGATAAGCCAATAATGGGAGGGAA
CAAACAAAAAGAAAAAAACAAAATACAGGCATGGCAACGCATGGCAACGC
ATGGCAACGCATGGCACGCCGCGTGACGATCAGTGTGGCTGGTAAATCGT
GGGCTGGGAGGGGCGAGACTCAACTGGCCACGCCACGCGGCACGGGCATG
CAGCAGTAGCCTTCGCAGGTTTTTACTGTTGTAAGAAATCGTATGGGACA
AAGTATGGAAATGGCTAATGGGGGGTCGGTTTGGGGTTAGGGGGTAGGAT
TAGGGTTACGGGACCCCTGTCATTTATTATTTCATATATATCAAGACAGG
AGTTACTGGAATTCTTCGCGAAGGTAGTCCCGGGCATGGCAATGGACTGC
CTTCGCGAGAAAAAACGGGGAATATTGGTTTTGTATGTAAAATAGAGTAG
TAGGGGTTCCGTAACCCTAACCCTAGCCACCGACCCCCCAAACATTCCCC
GATTCCATACTTGATCCCATATGTTTCGTCGAACAACAACAACCTGCGTA
GACTTCCCATGGCAATGCATCCGCGCACCACGCGTCCGTCCTTTTTCGAC
GGGTTCCTGAAAGGTGTTCCTCCGCCTTGCGTTTAAAATGTTCATGACGC
GGGCCGTTCAGGCTATCATCGACGTCAAGGCCGCAGGCGCGGAGGACCTG
AAAGTCAAGGGGCACACGAAGGAGGGGGAGCCGGAGCCCGTCACCGTGGC
CGACCACAACTCCAACAATGCAAGTCTCTGTATTGGTACATAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig697:858..2300+

>mRNA_L-elsbetiae_contig697.15744.1 ID=mRNA_L-elsbetiae_contig697.15744.1|Name=mRNA_L-elsbetiae_contig697.15744.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=390bp|location=Sequence derived from alignment at L-elsbetiae_contig697:858..2300+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTCGGCGAAGCTTAGCGACCTGATCGCGGTAGGTCTGGGGCTCACTGA
ACAGGCATCGAAGATGTCGGCGAAGCTTAGCGACCTGATCGCGGTAGGTC
TGGGGCTCACTGAACAGGCATCGAAGGCTATCATCGACGTCAAGGCCGCA
GGCGCGGAGGACCTGAAAGTCAAGGGGCACACGAAGGAGGGGGAGCCGGA
GCCCGTCACCGTGGCCGACCACAACTCCAACAATGCAAGTCTCTGTATTG
GTACATAAGCTATCATCGACGTCAAGGCCGCAGGCGCGGAGGACCTGAAA
GTCAAGGGGCACACGAAGGAGGGGGAGCCGGAGCCCGTCACCGTGGCCGA
CCACAACTCCAACAATGCAAGTCTCTGTATTGGTACATAA
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