mRNA_L-elsbetiae_contig6952.15724.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6952.15724.1
Unique NamemRNA_L-elsbetiae_contig6952.15724.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig6952.15724.1 vs. uniprot
Match: D8LTS5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTS5_ECTSI)

HSP 1 Score: 130 bits (328), Expect = 4.070e-33
Identity = 71/95 (74.74%), Postives = 77/95 (81.05%), Query Frame = 1
Query:   34 STARRMVESLEAVGFDAGVAPTAVLEIEGMMCQKSCGSTVRACLEAVPGVARAEVSFAGGRLARIWRELDGPRPPLLLPPSVLVGAVVDVGFGAR 318
            + AR  VE LEAVGFDA +AP+AVLEIEGMMCQKSCG+TVR CLEAVPGV RAEVS+A GRLAR+W   DGPR    LP SVLV AV DVGFGAR
Sbjct:  229 AVARLAVEELEAVGFDASLAPSAVLEIEGMMCQKSCGTTVRGCLEAVPGVDRAEVSYAEGRLARVWAR-DGPR----LPVSVLVEAVEDVGFGAR 318          
BLAST of mRNA_L-elsbetiae_contig6952.15724.1 vs. uniprot
Match: D8LTL7_ECTSI (Heavy metal translocating P-type ATPase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTL7_ECTSI)

HSP 1 Score: 85.5 bits (210), Expect = 3.440e-17
Identity = 48/89 (53.93%), Postives = 59/89 (66.29%), Query Frame = 1
Query:   49 MVESLEAVGFDAGVAPTAVLEIEGMMCQKSCGSTVRACLEAVPGVARAEVSFAGGRLARIWRELDGPRPPLLLPPSVLVGAVVDVGFGA 315
            +V+++E +GF+A  AP   LE+ GMMCQ SCG+TVR  LE V GV+RAEVSFA  R AR+W    G    +LL    LV AVV VGF A
Sbjct:  204 LVDAIETIGFEAAEAPAVELEVSGMMCQNSCGTTVRQALENVAGVSRAEVSFAEKR-ARVWGSSGGG---VLLSTGTLVDAVVTVGFDA 288          
BLAST of mRNA_L-elsbetiae_contig6952.15724.1 vs. uniprot
Match: A0A7S4A2N5_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A2N5_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 2.190e-11
Identity = 41/79 (51.90%), Postives = 48/79 (60.76%), Query Frame = 1
Query:   82 AGVAPTAVLEIEGMMCQKSCGSTVRACLEAVPGVARAEVSFAGGRLARIWRELDGPRPPLLLPPSVLVGAVVDVGFGAR 318
            A   PT VL IEGMMCQ+SCGSTV   L  VPGV+RAE SFA    A +W E+D          ++L+ AV  VGFGA 
Sbjct:    7 ASTPPTHVLTIEGMMCQQSCGSTVANALRNVPGVSRAEASFADHN-ASVWGEVDV---------ALLIDAVECVGFGAE 75          
BLAST of mRNA_L-elsbetiae_contig6952.15724.1 vs. uniprot
Match: A0A7S2UWL7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UWL7_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 4.840e-8
Identity = 33/71 (46.48%), Postives = 45/71 (63.38%), Query Frame = 1
Query:   58 SLEAVGFDA---------GVAPTAV-LEIEGMMCQKSCGSTVRACLEAVPGVARAEVSFAGGRLARIWREL 240
            ++EAVGF+A         G+ P  + LE+EGMMCQK+CG+TV   L + PGV  A+VSFA    A +W +L
Sbjct:   50 AVEAVGFEAAEVSANGVAGICPQHLELEVEGMMCQKNCGTTVHKALSSTPGVVFAKVSFAESA-AYVWADL 119          
BLAST of mRNA_L-elsbetiae_contig6952.15724.1 vs. uniprot
Match: A0A836CEY3_9STRA (Putative copper-transporting ATPase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEY3_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 7.240e-8
Identity = 36/70 (51.43%), Postives = 39/70 (55.71%), Query Frame = 1
Query:  106 LEIEGMMCQKSCGSTVRACLEAVPGVARAEVSFAGGRLARIWRELDGPRPPLLLPPSVLVGAVVDVGFGA 315
            L +EGMMCQK+CGSTV   L +VPG  RAEVSFA  R AR W                LV AV  VGF A
Sbjct:   24 LHVEGMMCQKNCGSTVHKALMSVPGTVRAEVSFAD-RQARAWGTAVA---------KALVDAVEGVGFDA 83          
BLAST of mRNA_L-elsbetiae_contig6952.15724.1 vs. uniprot
Match: A0A7S1TRC9_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TRC9_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 1.180e-6
Identity = 33/75 (44.00%), Postives = 41/75 (54.67%), Query Frame = 1
Query:   94 PTAVLEIEGMMCQKSCGSTVRACLEAVPGVARAEVSFAGGRLARIWRELDGPRPPLLLPPSVLVGAVVDVGFGAR 318
            P  VLE++GMMC K+CGSTV   L  VPGV  A V +   +LA IW   D          + L+ AV  +GF AR
Sbjct:    8 PDVVLEVDGMMCMKNCGSTVEGALRRVPGVVEARVVYEL-KLACIWGTTDA---------AALMDAVDMMGFDAR 72          
BLAST of mRNA_L-elsbetiae_contig6952.15724.1 vs. uniprot
Match: A0A7S3NIJ7_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NIJ7_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 1.190e-6
Identity = 35/73 (47.95%), Postives = 40/73 (54.79%), Query Frame = 1
Query:   97 TAVLEIEGMMCQKSCGSTVRACLEAVPGVARAEVSFAGGRLARIWRELDGPRPPLLLPPSVLVGAVVDVGFGA 315
            T  LEIEGMMCQ SCG+TV + L  V GV  AE S+A       WR         L   ++LV AV  VGFGA
Sbjct:    4 TTRLEIEGMMCQASCGATVESALNDVIGVESAEASYARSEAIVKWRS------DTLKNENLLVDAVEAVGFGA 70          
BLAST of mRNA_L-elsbetiae_contig6952.15724.1 vs. uniprot
Match: A0A2D4BDA3_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BDA3_PYTIN)

HSP 1 Score: 54.7 bits (130), Expect = 2.140e-6
Identity = 34/70 (48.57%), Postives = 43/70 (61.43%), Query Frame = 1
Query:  106 LEIEGMMCQKSCGSTVRACLEAVPGVARAEVSFAGGRLARIWRELDGPRPPLLLPPSVLVGAVVDVGFGA 315
            L IEGMMCQK+CG+TV+  L+ VPGV +A V+FA    AR+        P   + P  L+ AV  VGFGA
Sbjct:   31 LVIEGMMCQKNCGTTVQNALKGVPGVDKAVVTFAT-HSARVTCA-----PEAGVTPDELIDAVESVGFGA 94          
BLAST of mRNA_L-elsbetiae_contig6952.15724.1 vs. uniprot
Match: A0A0P1A8U0_PLAHL (Coppertransporting atpase n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1A8U0_PLAHL)

HSP 1 Score: 52.8 bits (125), Expect = 1.050e-5
Identity = 32/67 (47.76%), Postives = 40/67 (59.70%), Query Frame = 1
Query:   37 TARRMVESLEAVGFDAGV-----------APTAVLEIEGMMCQKSCGSTVRACLEAVPGVARAEVSF 204
            T   +V+++E VGF A V           + T  L IEGMMCQK+CGSTV   L++V GVA A VSF
Sbjct:   64 TENDLVDAIEGVGFGAAVNILESENEKQRSLTVELLIEGMMCQKNCGSTVENALQSVKGVANAVVSF 130          
BLAST of mRNA_L-elsbetiae_contig6952.15724.1 vs. uniprot
Match: A0A662Y8Q1_9STRA (Uncharacterized protein (Fragment) n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662Y8Q1_9STRA)

HSP 1 Score: 51.2 bits (121), Expect = 3.620e-5
Identity = 40/106 (37.74%), Postives = 50/106 (47.17%), Query Frame = 1
Query:   37 TARRMVESLEAVGFDAGVAPTAVLE-------------IEGMMCQKSCGSTVRACLEAVPGVARAEVSFAGGRLARIWRELDGPRPPLLLPPSVLVGAVVDVGFGA 315
            TA  +V+++E VGF A V  T  ++             +EGMMCQK+CG+TV   L  V GVA A V F   RLA +     G           LV  V  VGF A
Sbjct:   53 TASDLVDAVECVGFGAAVKDTTTMKTERETNPLEIALLVEGMMCQKNCGTTVENALRGVDGVASAAVDF-DRRLATVTLRSAGSTTL-----EELVDMVECVGFEA 152          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6952.15724.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
D8LTS5_ECTSI4.070e-3374.74Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D8LTL7_ECTSI3.440e-1753.93Heavy metal translocating P-type ATPase n=2 Tax=Ec... [more]
A0A7S4A2N5_9STRA2.190e-1151.90Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S2UWL7_9STRA4.840e-846.48Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A836CEY3_9STRA7.240e-851.43Putative copper-transporting ATPase n=1 Tax=Tribon... [more]
A0A7S1TRC9_9STRA1.180e-644.00Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7S3NIJ7_9STRA1.190e-647.95Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A2D4BDA3_PYTIN2.140e-648.57Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
A0A0P1A8U0_PLAHL1.050e-547.76Coppertransporting atpase n=1 Tax=Plasmopara halst... [more]
A0A662Y8Q1_9STRA3.620e-537.74Uncharacterized protein (Fragment) n=2 Tax=Nothoph... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6952contigL-elsbetiae_contig6952:6781..7098 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score132.1
Seed ortholog evalue1.5e-28
Seed eggNOG ortholog2880.D8LTS5
KEGG rclassRC00002
KEGG koko:K17686
KEGG TC3.A.3.5
KEGG ReactionR00086
KEGG Pathwayko01524,ko04016,map01524,map04016
Hectar predicted targeting categoryother localisation
EggNOG free text desc.cation-transporting ATPase activity
EggNOG OGsCOG2217@1,KOG0207@2759
EC3.6.3.54
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons1
Model size318
Cds size318
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816770.6032135-CDS-L-elsbetiae_contig6952:6780..70981622816770.6032135-CDS-L-elsbetiae_contig6952:6780..7098Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6952 6781..7098 +
1691683800.4538913-CDS-L-elsbetiae_contig6952:6780..70981691683800.4538913-CDS-L-elsbetiae_contig6952:6780..7098Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6952 6781..7098 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6952.15724.1prot_L-elsbetiae_contig6952.15724.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6952 6781..7098 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6952.15724.1

>prot_L-elsbetiae_contig6952.15724.1 ID=prot_L-elsbetiae_contig6952.15724.1|Name=mRNA_L-elsbetiae_contig6952.15724.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=106bp
VAAAAAELSLGSTARRMVESLEAVGFDAGVAPTAVLEIEGMMCQKSCGST
VRACLEAVPGVARAEVSFAGGRLARIWRELDGPRPPLLLPPSVLVGAVVD
VGFGAR
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mRNA from alignment at L-elsbetiae_contig6952:6781..7098+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6952.15724.1 ID=mRNA_L-elsbetiae_contig6952.15724.1|Name=mRNA_L-elsbetiae_contig6952.15724.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=318bp|location=Sequence derived from alignment at L-elsbetiae_contig6952:6781..7098+ (Laminarionema elsbetiae ELsaHSoW15)
GTGGCGGCAGCGGCGGCCGAGCTGTCTCTCGGCTCCACGGCGAGGCGCAT GGTGGAGTCGCTGGAGGCCGTCGGCTTCGACGCCGGCGTGGCTCCGACGG CCGTCCTCGAGATCGAGGGCATGATGTGCCAGAAGAGCTGCGGCTCCACG GTGAGAGCGTGCCTGGAGGCCGTCCCCGGGGTGGCGCGCGCCGAGGTCTC CTTCGCCGGCGGGCGGCTGGCGAGGATCTGGCGCGAGCTGGACGGGCCCC GTCCGCCGCTGCTGCTGCCGCCGTCAGTGCTGGTGGGAGCGGTGGTGGAC GTCGGCTTCGGGGCGCGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6952:6781..7098+

>mRNA_L-elsbetiae_contig6952.15724.1 ID=mRNA_L-elsbetiae_contig6952.15724.1|Name=mRNA_L-elsbetiae_contig6952.15724.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=636bp|location=Sequence derived from alignment at L-elsbetiae_contig6952:6781..7098+ (Laminarionema elsbetiae ELsaHSoW15)
GTGGCGGCAGCGGCGGCCGAGCTGTCTCTCGGCTCCACGGCGAGGCGCAT
GGTGGAGTCGCTGGAGGCCGTCGGCTTCGACGCCGGCGTGGCTCCGACGG
CCGTCCTCGAGATCGAGGGCATGATGTGCCAGAAGAGCTGCGGCTCCACG
GTGAGAGCGTGCCTGGAGGCCGTCCCCGGGGTGGCGCGCGCCGAGGTCTC
CTTCGCCGGCGGGCGGCTGGCGAGGATCTGGCGCGAGCTGGACGGGCCCC
GTCCGCCGCTGCTGCTGCCGCCGTCAGTGCTGGTGGGAGCGGTGGTGGAC
GTCGGCTTCGGGGCGCGGGTGGCGGCAGCGGCGGCCGAGCTGTCTCTCGG
CTCCACGGCGAGGCGCATGGTGGAGTCGCTGGAGGCCGTCGGCTTCGACG
CCGGCGTGGCTCCGACGGCCGTCCTCGAGATCGAGGGCATGATGTGCCAG
AAGAGCTGCGGCTCCACGGTGAGAGCGTGCCTGGAGGCCGTCCCCGGGGT
GGCGCGCGCCGAGGTCTCCTTCGCCGGCGGGCGGCTGGCGAGGATCTGGC
GCGAGCTGGACGGGCCCCGTCCGCCGCTGCTGCTGCCGCCGTCAGTGCTG
GTGGGAGCGGTGGTGGACGTCGGCTTCGGGGCGCGG
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