mRNA_L-elsbetiae_contig6934.15707.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6934.15707.1
Unique NamemRNA_L-elsbetiae_contig6934.15707.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig6934.15707.1 vs. uniprot
Match: D8LCJ2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LCJ2_ECTSI)

HSP 1 Score: 325 bits (833), Expect = 1.040e-106
Identity = 157/165 (95.15%), Postives = 163/165 (98.79%), Query Frame = 1
Query:    1 RQEARIDRPLDPGVRVTVKLDKGDPCKKNHKGRAVPPSAPREELGLYWGYQTRLASGMADLLAGCPYKGGYDLTLGTSERGSVTVDSSEFSLPKYRHALVVFGGVQGIEATVDADESLQLPGSESSALFDMWVNTCPGQGSRTIRTEEAVLITLARLRPHVLGNG 495
            R+EARIDRPLDPGVRVTVKLDKGDPCKKNHKGRAVPPSAPREELGLYWGYQTRLASGMADLLAGCPYKGGYDLT+GTSERG+VTVDS +F+LP+YRHALVVFGGVQGIEATVDADESLQLPGSESSALFDMWVNTCPGQGSRTIRTEEAVLITLARLR HVLGNG
Sbjct:  401 RKEARIDRPLDPGVRVTVKLDKGDPCKKNHKGRAVPPSAPREELGLYWGYQTRLASGMADLLAGCPYKGGYDLTVGTSERGNVTVDSPDFALPEYRHALVVFGGVQGIEATVDADESLQLPGSESSALFDMWVNTCPGQGSRTIRTEEAVLITLARLRSHVLGNG 565          
BLAST of mRNA_L-elsbetiae_contig6934.15707.1 vs. uniprot
Match: A0A836CGQ2_9STRA (Putative RNA methyltransferase (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGQ2_9STRA)

HSP 1 Score: 212 bits (539), Expect = 2.970e-65
Identity = 104/164 (63.41%), Postives = 129/164 (78.66%), Query Frame = 1
Query:    1 RQEARIDRPLDPGVRVTVKL--DKGDPCKKNHKGRAVPPSAPREELGLYWGYQTRLASGMADLLAGCPYKGGYDLTLGTSERGSVTVDSSEFSLPKYRHALVVFGGVQGIEATVDADESLQLPGSESSALFDMWVNTCPGQGSRTIRTEEAVLITLARLRPHVL 486
            ++EARIDR L  G+RVTV L  +  DP K++H+G AV  S PREE GLYWGY TRLA+ + D++AG PY GGYDLTLGTSERG  T+D   F +  ++HAL+VFGGVQGIEA++D DESL++PG+++  LFDMWVN  P QGSRTIRTEEAVLITLARL+  +L
Sbjct:  175 KREARIDRKLAAGMRVTVALHPEDVDPAKRSHRGTAVAASRPREERGLYWGYSTRLAATLGDVIAGGPYAGGYDLTLGTSERGHATLDDEGFGVRPFKHALIVFGGVQGIEASIDNDESLEMPGADAHTLFDMWVNIAPRQGSRTIRTEEAVLITLARLQGPIL 338          
BLAST of mRNA_L-elsbetiae_contig6934.15707.1 vs. uniprot
Match: A0A3M6V7G9_9STRA (Uncharacterized protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6V7G9_9STRA)

HSP 1 Score: 207 bits (527), Expect = 1.140e-62
Identity = 98/166 (59.04%), Postives = 127/166 (76.51%), Query Frame = 1
Query:    1 RQEARIDRPLDPGVRVTVKLDKGDP-CKKNHKGRAVPPSAPREELGLYWGYQTRLASGMADLLAGCPYKGGYDLTLGTSERGSVTVDSSEFSLPKYRHALVVFGGVQGIEATVDADESLQLPGSESSALFDMWVNTCPGQGSRTIRTEEAVLITLARLRPHVLGNG 495
            ++E  +D+ + PGVRVTVK+D+     KK   G+ V  + PRE+LGLYWGY TR AS ++D+   CP+  GYDL +GTSERG+V++D ++FS+PK+RHAL+VFGGV GIE  VDADE L + G +S  LFDMWVNTCP QGSRTIR+EEA+LI+LA LRPHV+  G
Sbjct:  243 QREVVVDKRITPGVRVTVKIDEASKEFKKKMVGQLVSSAEPREQLGLYWGYTTRFASSLSDVWTTCPFPEGYDLKIGTSERGNVSIDDADFSMPKFRHALIVFGGVAGIEECVDADEKLPVSGDDSHTLFDMWVNTCPEQGSRTIRSEEALLISLAALRPHVIRGG 408          
BLAST of mRNA_L-elsbetiae_contig6934.15707.1 vs. uniprot
Match: G5AIL6_PHYSP (Uncharacterized protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G5AIL6_PHYSP)

HSP 1 Score: 203 bits (516), Expect = 2.560e-62
Identity = 96/166 (57.83%), Postives = 126/166 (75.90%), Query Frame = 1
Query:    1 RQEARIDRPLDPGVRVTVKLDKGDP-CKKNHKGRAVPPSAPREELGLYWGYQTRLASGMADLLAGCPYKGGYDLTLGTSERGSVTVDSSEFSLPKYRHALVVFGGVQGIEATVDADESLQLPGSESSALFDMWVNTCPGQGSRTIRTEEAVLITLARLRPHVLGNG 495
            ++E  +D+ + PG+RVTVK+D+     KK   G+ V  + PRE LG+YWGY TR A  ++++ + CP+ GGYDL +GTSERG+V+VD   FSLPK+RHAL+VFGGV GIE  VDADE + + G +S+ LFDMWVNTCP QGSRTIR+EEA+LI+LA LRPHV  +G
Sbjct:  133 QREVVVDKRITPGIRVTVKIDEASKDFKKKMVGKLVSSAEPREHLGVYWGYTTRFAPSLSNVWSDCPFPGGYDLKVGTSERGNVSVDDPSFSLPKFRHALIVFGGVAGIEECVDADEKVPVSGEDSNTLFDMWVNTCPEQGSRTIRSEEALLISLAALRPHVKRSG 298          
BLAST of mRNA_L-elsbetiae_contig6934.15707.1 vs. uniprot
Match: A0A7S4VHX6_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4VHX6_9STRA)

HSP 1 Score: 200 bits (508), Expect = 4.050e-62
Identity = 99/165 (60.00%), Postives = 119/165 (72.12%), Query Frame = 1
Query:   13 RIDRPLDPGVRVTVKLD-KGDPCKKNHKGRAVPPSAPREELGLYWGYQTRLASGMADLLAGCPYKGGYDLTLGTSERGSVTVDSSEFSLPKYRHALVVFGGVQGIEATVDADESLQLPGSESSALFDMWVNTCPGQGSRTIRTEEAVLITLARLRPHVLGNGAED 504
            RIDR L PG+R TV+LD K        KG  V P+AP E+ G YWGY TRLA G+  +   CPY+GGYDL +GTSERG+VTVD   FS+P ++HA+++FGGV GIE  VDADES+ LPG +S  LFD+WVNTCP QGSRTIRTEEAV I+LAR RP    N +E 
Sbjct:   29 RIDRVLTPGIRCTVQLDVKSYDKAARMKGTVVSPTAPWEDDGTYWGYTTRLADGIKAVFDECPYEGGYDLKIGTSERGNVTVDDKGFSIPTFQHAIIMFGGVAGIEECVDADESMTLPGKDSMKLFDVWVNTCPFQGSRTIRTEEAVFISLARFRPLFASNSSEQ 193          
BLAST of mRNA_L-elsbetiae_contig6934.15707.1 vs. uniprot
Match: A0A6A4D6T1_9STRA (Putative methyltransferase n=3 Tax=Phytophthora TaxID=4783 RepID=A0A6A4D6T1_9STRA)

HSP 1 Score: 206 bits (523), Expect = 4.410e-62
Identity = 97/166 (58.43%), Postives = 129/166 (77.71%), Query Frame = 1
Query:    1 RQEARIDRPLDPGVRVTVKLDKGDP-CKKNHKGRAVPPSAPREELGLYWGYQTRLASGMADLLAGCPYKGGYDLTLGTSERGSVTVDSSEFSLPKYRHALVVFGGVQGIEATVDADESLQLPGSESSALFDMWVNTCPGQGSRTIRTEEAVLITLARLRPHVLGNG 495
            ++E  +D+ + PG+RVTVK+D+     KK   G+ V  + PRE+LG+YWGY TR A+ ++++ + CP+ GGYDL +GTSERG+V+VD  +FSLPK+RHALVVFGGV GIE  VDADE + + G +S+ LFDMWVNTCP QGSRTIR+EEA+LI+LA LRPHV  +G
Sbjct:  242 QREVVVDKRITPGIRVTVKIDEASKDFKKKMVGKLVSSAEPREQLGVYWGYTTRFATSLSNVWSDCPFPGGYDLKVGTSERGNVSVDDPDFSLPKFRHALVVFGGVAGIEECVDADEKVPVSGEDSNTLFDMWVNTCPEQGSRTIRSEEALLISLAALRPHVSRSG 407          
BLAST of mRNA_L-elsbetiae_contig6934.15707.1 vs. uniprot
Match: A0A329SJL9_9STRA (Methyltransferase n=16 Tax=Phytophthora TaxID=4783 RepID=A0A329SJL9_9STRA)

HSP 1 Score: 204 bits (518), Expect = 2.350e-61
Identity = 95/166 (57.23%), Postives = 127/166 (76.51%), Query Frame = 1
Query:    1 RQEARIDRPLDPGVRVTVKLDKGDP-CKKNHKGRAVPPSAPREELGLYWGYQTRLASGMADLLAGCPYKGGYDLTLGTSERGSVTVDSSEFSLPKYRHALVVFGGVQGIEATVDADESLQLPGSESSALFDMWVNTCPGQGSRTIRTEEAVLITLARLRPHVLGNG 495
            ++E  +D+ + PG+RVTVK+D+     KK   G+ V  + PRE+LG+YWGY TR A  ++++   CP+ GGYDL +GTSERG+V+VD ++FSLPK+RHAL+VFGGV GIE  VDADE + + G +S+ LFDMW NTCP QGSRTIR+EEA+LI+LA LRPHV  +G
Sbjct:  240 QREVVVDKRIQPGIRVTVKIDEASKDFKKKMVGKLVSSAEPREQLGVYWGYTTRFAPSLSNVWTDCPFPGGYDLKVGTSERGNVSVDDADFSLPKFRHALIVFGGVAGIEECVDADEKVPVSGEDSNTLFDMWANTCPEQGSRTIRSEEALLISLAALRPHVKRSG 405          
BLAST of mRNA_L-elsbetiae_contig6934.15707.1 vs. uniprot
Match: M4BVW2_HYAAE (Uncharacterized protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BVW2_HYAAE)

HSP 1 Score: 203 bits (516), Expect = 5.310e-61
Identity = 93/166 (56.02%), Postives = 126/166 (75.90%), Query Frame = 1
Query:    1 RQEARIDRPLDPGVRVTVKLDKGDP-CKKNHKGRAVPPSAPREELGLYWGYQTRLASGMADLLAGCPYKGGYDLTLGTSERGSVTVDSSEFSLPKYRHALVVFGGVQGIEATVDADESLQLPGSESSALFDMWVNTCPGQGSRTIRTEEAVLITLARLRPHVLGNG 495
            ++E  +D+ + PG+RVTVK+++     KK   G+ V  + PRE+LG+YWGY TR AS ++++   CP+ GGYDL +GTSERG+V+VD ++F+LPK+RHAL+VFGGV GIE  VD DE + L G++SS LFDMWVNTCP QGSRTIR EEA+L++LA  RPH+   G
Sbjct:  246 QREVVVDKRVKPGIRVTVKINEASKEFKKKMTGKLVSSAEPREQLGMYWGYTTRFASSLSNVWTDCPFPGGYDLKVGTSERGNVSVDDADFALPKFRHALIVFGGVAGIEECVDVDEKIPLTGADSSTLFDMWVNTCPDQGSRTIRLEEALLVSLAAFRPHIARGG 411          
BLAST of mRNA_L-elsbetiae_contig6934.15707.1 vs. uniprot
Match: A0A0P1ASZ4_PLAHL (Uncharacterized conserved protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1ASZ4_PLAHL)

HSP 1 Score: 202 bits (513), Expect = 1.280e-60
Identity = 96/166 (57.83%), Postives = 126/166 (75.90%), Query Frame = 1
Query:    1 RQEARIDRPLDPGVRVTVKLDKGDP-CKKNHKGRAVPPSAPREELGLYWGYQTRLASGMADLLAGCPYKGGYDLTLGTSERGSVTVDSSEFSLPKYRHALVVFGGVQGIEATVDADESLQLPGSESSALFDMWVNTCPGQGSRTIRTEEAVLITLARLRPHVLGNG 495
            ++E  +D+ + PG+RVTVK+D+     KK   G  V  + PRE+LG+YWGY TR AS ++++   CP+ GGYDL +GTSERG+V+VD  +F+LP +RHALVVFGGV GIE  VDADE+L + G +S+ LFDMWVNTCP QGSRTIR+EEA+LI+LA LR HV  +G
Sbjct:  240 QREVVVDKRIQPGIRVTVKIDEASKEFKKKMVGTLVSSAEPREQLGIYWGYTTRFASSLSNVWTNCPFPGGYDLKVGTSERGNVSVDDPDFTLPTFRHALVVFGGVAGIEECVDADETLPVSGEDSNTLFDMWVNTCPDQGSRTIRSEEALLISLAALRSHVKHSG 405          
BLAST of mRNA_L-elsbetiae_contig6934.15707.1 vs. uniprot
Match: A0A7S2JTI2_9STRA (Hypothetical protein n=2 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2JTI2_9STRA)

HSP 1 Score: 200 bits (509), Expect = 1.010e-59
Identity = 102/166 (61.45%), Postives = 122/166 (73.49%), Query Frame = 1
Query:    1 RQEARIDRPLDPGVRVTVKLDKGDPCK-KNHKGRAVPPSAPREELGLYWGYQTRLASGMADLLAGCPYKGG-YDLTLGTSERGSVTVDSSEFSLPKYRHALVVFGGVQGIEATVDADESLQLPGSESSALFDMWVNTCPGQGSRTIRTEEAVLITLARLRPHVLGN 492
            RQ   IDR L  G+R TV+L+     K +  KG+ V P+APRE  G YWGY TRLA G+  +   CP+ GG YDL +GTSERG +TV+ S+FSLP+Y+H LVVFGGV GIE  VDADESL L G +S +LFD+WVNTCP QGSRTIRTEEAV+I+LARLRP V  N
Sbjct:  236 RQPVEIDRQLPAGIRCTVELEPSAYSKPRGIKGKVVSPAAPREHDGTYWGYTTRLAKGIGAVFEECPFPGGKYDLKIGTSERGDITVEDSKFSLPRYKHCLVVFGGVAGIEECVDADESLGLHGDDSRSLFDLWVNTCPFQGSRTIRTEEAVMISLARLRPFVAKN 401          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6934.15707.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LCJ2_ECTSI1.040e-10695.15Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CGQ2_9STRA2.970e-6563.41Putative RNA methyltransferase (Fragment) n=1 Tax=... [more]
A0A3M6V7G9_9STRA1.140e-6259.04Uncharacterized protein n=1 Tax=Peronospora effusa... [more]
G5AIL6_PHYSP2.560e-6257.83Uncharacterized protein n=1 Tax=Phytophthora sojae... [more]
A0A7S4VHX6_9STRA4.050e-6260.00Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A6A4D6T1_9STRA4.410e-6258.43Putative methyltransferase n=3 Tax=Phytophthora Ta... [more]
A0A329SJL9_9STRA2.350e-6157.23Methyltransferase n=16 Tax=Phytophthora TaxID=4783... [more]
M4BVW2_HYAAE5.310e-6156.02Uncharacterized protein n=1 Tax=Hyaloperonospora a... [more]
A0A0P1ASZ4_PLAHL1.280e-6057.83Uncharacterized conserved protein n=1 Tax=Plasmopa... [more]
A0A7S2JTI2_9STRA1.010e-5961.45Hypothetical protein n=2 Tax=Leptocylindrus danicu... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6934contigL-elsbetiae_contig6934:201..4545 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score326.6
Seed ortholog evalue6.7e-87
Seed eggNOG ortholog2880.D8LCJ2
Preferred nameC9orf114
KEGG koko:K09142
Hectar predicted targeting categoryother localisation
GOsGO:0000070,GO:0000278,GO:0000280,GO:0000775,GO:0000776,GO:0000819,GO:0000922,GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0005730,GO:0005813,GO:0005815,GO:0005819,GO:0005856,GO:0006139,GO:0006396,GO:0006725,GO:0006807,GO:0006996,GO:0007049,GO:0007059,GO:0008150,GO:0008152,GO:0008168,GO:0009892,GO:0009987,GO:0010033,GO:0010467,GO:0010468,GO:0010605,GO:0010608,GO:0010629,GO:0014070,GO:0015630,GO:0016043,GO:0016070,GO:0016441,GO:0016458,GO:0016740,GO:0016741,GO:0019222,GO:0022402,GO:0031047,GO:0031050,GO:0031616,GO:0031974,GO:0031981,GO:0032259,GO:0032991,GO:0034641,GO:0035194,GO:0035195,GO:0035196,GO:0035198,GO:0040029,GO:0042221,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043331,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044430,GO:0044446,GO:0044464,GO:0046483,GO:0048285,GO:0048519,GO:0050789,GO:0050896,GO:0051179,GO:0051235,GO:0051276,GO:0051640,GO:0051641,GO:0051642,GO:0051651,GO:0051657,GO:0051661,GO:0051716,GO:0060255,GO:0061842,GO:0061980,GO:0065007,GO:0065008,GO:0070013,GO:0070887,GO:0070918,GO:0071310,GO:0071359,GO:0071407,GO:0071704,GO:0071840,GO:0072686,GO:0090304,GO:0097159,GO:0098687,GO:0098813,GO:0140014,GO:1901360,GO:1901363,GO:1901698,GO:1901699,GO:1903047
EggNOG free text desc.SPOUT domain containing methyltransferase 1
EggNOG OGsCOG2106@1,KOG3925@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000
Exons4
Model size507
Cds size507
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6934.15707.1prot_L-elsbetiae_contig6934.15707.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6934 201..4545 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816769.098991-CDS-L-elsbetiae_contig6934:200..2661622816769.098991-CDS-L-elsbetiae_contig6934:200..266Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6934 201..266 +
1691683799.2524972-CDS-L-elsbetiae_contig6934:200..2661691683799.2524972-CDS-L-elsbetiae_contig6934:200..266Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6934 201..266 +
1622816769.109364-CDS-L-elsbetiae_contig6934:1662..18051622816769.109364-CDS-L-elsbetiae_contig6934:1662..1805Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6934 1663..1805 +
1691683799.2844145-CDS-L-elsbetiae_contig6934:1662..18051691683799.2844145-CDS-L-elsbetiae_contig6934:1662..1805Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6934 1663..1805 +
1622816769.1203427-CDS-L-elsbetiae_contig6934:2729..28381622816769.1203427-CDS-L-elsbetiae_contig6934:2729..2838Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6934 2730..2838 +
1691683799.3027732-CDS-L-elsbetiae_contig6934:2729..28381691683799.3027732-CDS-L-elsbetiae_contig6934:2729..2838Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6934 2730..2838 +
1622816769.1333926-CDS-L-elsbetiae_contig6934:4356..45451622816769.1333926-CDS-L-elsbetiae_contig6934:4356..4545Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6934 4357..4545 +
1691683799.3127153-CDS-L-elsbetiae_contig6934:4356..45451691683799.3127153-CDS-L-elsbetiae_contig6934:4356..4545Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6934 4357..4545 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6934.15707.1

>prot_L-elsbetiae_contig6934.15707.1 ID=prot_L-elsbetiae_contig6934.15707.1|Name=mRNA_L-elsbetiae_contig6934.15707.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=169bp
RQEARIDRPLDPGVRVTVKLDKGDPCKKNHKGRAVPPSAPREELGLYWGY
QTRLASGMADLLAGCPYKGGYDLTLGTSERGSVTVDSSEFSLPKYRHALV
VFGGVQGIEATVDADESLQLPGSESSALFDMWVNTCPGQGSRTIRTEEAV
LITLARLRPHVLGNGAED*
back to top

mRNA from alignment at L-elsbetiae_contig6934:201..4545+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6934.15707.1 ID=mRNA_L-elsbetiae_contig6934.15707.1|Name=mRNA_L-elsbetiae_contig6934.15707.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4345bp|location=Sequence derived from alignment at L-elsbetiae_contig6934:201..4545+ (Laminarionema elsbetiae ELsaHSoW15)
CGTCAGGAAGCGCGGATCGATCGTCCGCTGGACCCCGGGGTGCGCGTCAC TGTGAAGCTCGACAAGGTATTGTAACGACCCCGTTTTTATTTTTTTTCAT TGCTGTGGGGAGCTCCTTCGAACGGGGGCACAGCAGTATGTATGCTGCTG TTTGCTCGCCGGGGCGACGTGGATCCACCACCACCCCCATCCGTCGTTGT TGACGAGCCAAGCAAGCCCAGTAAGGGAGGCTTGCACAGCTGCGCCCTCA GCGCGCCAATGGGCCAATAATAGGCCCAGGCATGGGGCTGGGTGTGCGCT GCACCCCAAGTCTCAACGCTGCTTTTAGAAGAAGGCGCGCTCAGCATTAG CAGCAGCAGTAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCA GCAGCAGCAGCAGCAGTAGCAGCAGCAGCAGCAGCAGCAGCAGCGGGAGC AGCTGCTGTGCTGTCTGTGCCTTGCCGCAGTGTTGTTGCCTTACTTAATA ATAAGGCAGGCAGGAAAAGAGGTCTTCGCCCGCCCATGGCACCCCCTTCT TAGAGCCTACTACGTATACGTGGCAAGTTGTTGTTGTTGTTGTTGTTGCT GTTGCTGTTATTTCTCACATTAGCTTTGCACACGGTTAGATAATGATCCA GCCGCTAGGATAAGAAGCCGGTGCTTTATTTCCGTGGCCAGAAGAGGGTA GCTTGACATGTTGTTGTTGCCGTTGTTGTTGTTGTTGTTGCCCACATTAC TACTGTAGCTCTCTACACAGTCCCGAAACATCTATGGGGCCCCGCCCCGC CCGTGGTCGCAAAAAGACTTAAGGGGGGCACACTCGACGACGCCGCTGAA GAAAAGCACAACAAGCTTTTGTTGGCACGTGTCTTTTTATTTTCTTGCTC TCCAGGTGTAGAGCATATACACATAGCGTCGTCACGGTGGCAGCACGGCG TTTCTGACCGCCGGTCCGGTAGTCTTGTGCGCGTCCTGCCCACACTTTTC CGGCCAGTGCGAAAGTGAAACGTCGTCACTGGTGATGAGGTGTATGTAGC GTTGTTGTTGTTGTTGCTGCTGCTGCTGCTGCTGCTGCTGACCGCGCCTT CTTCTAAAAGCAGCGGGTGCAGCGCACACCCAGCCCCATGCCGCTCCTTC GCCCGTCGGTGCGCTAAGGGCGCAGTTGTGCAAGCCTCCCTTTGCTTCAG TTCGGGCAGAGCTGTTTTAACACGCTCTCTGGGCTTGCTTGGCTCGTCAA CAACGACGGATGGGGGGGGGGGTGGATCCACGTCGCCCCGGGGAGCAAAC AGCAGCATACATACCGCTGTGCCCCCGTTCGAAGGAGCTCCTACATATGT ACATACAAGGTTGCGGCGCAATACAAACAAATGATGCAGACATACATACA CGGGACCTCTCATACCCCCCCCCCCCGCCCCCCCCCGCCCCGCTGTGCAT GTTTTGTTATAGGGAGACCCTTGCAAGAAGAATCACAAGGGCAGGGCGGT GCCCCCTTCTGCCCCTCGAGAGGAGCTGGGTCTCTACTGGGGCTACCAGA CGAGGCTTGCAAGCGGCATGGCGGATTTGCTGGCTGGGTGCCCCTACAAG GGCGGGTGAGGCCGGGGGGACGGGAAACGTTTGCCGTAGATGACACAAGA TACCACACCACCCGCTGGACAGATTTTCAAAACTCGATTCCTCCTCAGCC AGAAGAAGAGAGCCAGCGCCGAAAGGGAGGGGTGGTGTTGGAACTATCTA GTCGAGAGCTGTGTCCGAAAATGTGTCGTTTGGTGCTGGCACCCTCTTCG TTACGGAGTATTGGAGCTCTAAAGTTCGGTCCAGGGGGCGTGGTATCTTG TGTCACCTACGGTAGACGCCGGGCTCGTTGCTGTTGTTATTGTTGGTTGG TGGTACTAATGACCGTGTTACGTGTTGATCGGGGGGGCGAAACGTTGAGA CGCCGGGTGCGTTTAGATGCTTGGCTCGTTGCTGTTGTCGGTGTTGATGT TGGTGGTTTTGGTTGTGAAAGGTGTTATGTACTCTGTCACTCGTGAGTTG GTTAGTACTCTGTCACTCGTTAGTTGATTAGTTAGCTGGCTGTTGGTGTT GTTGTTGTTGTTCGTGTGTGGTGTTGTTGTTGGTGTTGTTGTTGCTGTTG CTGTTGTTGTTGCTTCTGCTGTTGCTGCTGTTGTTGTTGTTGTTGTTGTT GTTGTTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGC TGCTGTTGTTGTTGTTGCTTCCTTTCTTTGTGTGATGATCTTGCTGCTGC TGCTGTGGCAGTGTTGGAGGGCGTTGCTGGCAGTGTTGGAGGGCCAACGT TGCCTGGGACCGTGCCGTGTCGTCGCTGCTGCTCTCGGCGCTTCGCACGT CCGTCCCGCGCCTGACGATGACGCATTGGTTGGGTGCCGCACCGCCGTAC AACAGCAGTACCAGGTACAACCACGTCTAAATGTACCCCGTGATATTTAC CGAAATGCCAACGAACGAACATCACGCAGATACGACCTCACCCTGGGGAC CTCAGAGCGCGGATCTGTAACGGTCGATAGCTCGGAGTTCTCGCTGCCCA AGTACCGCCACGCTCTCGTTGTCTTCGGAGGCGTGCAGGTGAATTGCATA TTTTAACCCGTCGGTTTCGTAGTGTTTTTCATGGGTTCGAAGTGGCACAT ATAGAGGTAGGTGTGTTTGGGTTGGGAGGGTGGGGGCGGCTGGACAGACA GGTATGTGCCGTAGGTGACACAAGATACCACACCCCCTGGACCGACCGAC CTTTAGAGCTTCATTACAATACTCCGTAAAGAGGGCGCCAGCACCAAACG GCATATTTTCGGACACAGCCCTCGACTAGATCTTTCCAACGCCGCCACCC CCTTCCGGCACTGGCACTCTTATTCTTGCTGGGGAAGAATCGGATCGAGC TTTGAAAATTTGTACGGCGGGTGGTGTGGTATCTTGTGTCACCTACGGTA TGCGCATGGCAGACATATGTGTACCCCTGTACAAGTATCGCAGAGGAGGA GGAAGCTTTCTAGTTTTTCTCGCTGAGGAACGAACTTTTGCTCAAAGCAC TCCGATGCTGTCTTATCTAGATAGTGCGTGTGTTGTCTCTTGTCTATAAA TACAGAGATACATGCATGTAACCTCTGTTTTTTTTCCGCGATGCTTTACT TTAGCATTCGCTTTTTCTACATATTCGTATATGACAGCAGTTCATTCAAT GGCTTGGACGATCACACACGGCCAGGGCTCTCGTGTGCATTTTCGTTAGC GAATCGAACACGTGCGTTTGTTGCAAGCAGTGCAAAAATCCAGAGGCAAG ACGACCGGACTCCGCATATATATTTTTATTCGCGCACGTGTTCAATTAGT TTATGTTTTTTTTTTTTTTGGAAACCAGAAAAAATGCCACACTTGGTTTT TCCGAACGCGAGTTTTCAGGGCGGGCCAGAAAATACTTTCCGCGTGGAGC AAAGATATGCTTCATTGTTGGTACGCTCGCAAGACCTTGCCTTGGCCGAC AAGAAAAGCAAAAAGCTCTGCGTGTTCGTCTCCGCGTTCGCGTGTATTTA GGTTTGCGCTATAATACATTACATAACTTATCTGGTGAAATAAGTTCGAT CCACGGAACCCCCGAAGGGGGTGCCGCGGAGGAGAACGGGTTGACTGAAA GAGGGAGGCTTGAACAAGTAAGCAAGCGCCCACGTACTCTGTCGTCAAAC CTCTGCAACCCTAACGGAGTTAAAAGCTGAAGTAGTACCGGCCGCCACTG CCCGACGGACTTTTCGGAACGTTGTTCTCGTCTCGGCGGGACAACGACAA CGACGAAACGGCACAGGAGGAAACCCCCCAACCCCCCCCCGAGTTTCTGT GTTCTTCTCTCCCCCCGCCGCCCCGTCCGTGCCCCCCCTCCCCCCCCCCC CCCCCCCCCCCCGCCCGCCCGCCGGCCGCGCGGTGTCGNNNNNNNNNNGC ACAGGAGGAAACCCCCCCCCCCCCCCCTGAGTTTCTTTTTTCTTCTCCCC CCCCCCCGCCCCGTCCGTGCCCCCCCCCCCCCCCCCCCCCCCCGTTTGTA TTGTGTGTGTGTGTGTGTGTATTGTGTTTTTATTTTTTGTTTTTTACTCT TCCCAGGGAATCGAGGCCACCGTGGACGCCGACGAATCTCTGCAACTCCC GGGGAGCGAGTCGTCCGCCCTCTTCGACATGTGGGTCAACACCTGCCCCG GCCAGGGAAGCCGGACGATCAGGACGGAGGAGGCCGTGCTCATCACGCTC GCGCGCCTCCGGCCTCACGTCCTTGGGAACGGCGCGGAGGACTGA
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig6934:201..4545+

>mRNA_L-elsbetiae_contig6934.15707.1 ID=mRNA_L-elsbetiae_contig6934.15707.1|Name=mRNA_L-elsbetiae_contig6934.15707.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1014bp|location=Sequence derived from alignment at L-elsbetiae_contig6934:201..4545+ (Laminarionema elsbetiae ELsaHSoW15)
CGTCAGGAAGCGCGGATCGATCGTCCGCTGGACCCCGGGGTGCGCGTCAC
TGTGAAGCTCGACAAGCGTCAGGAAGCGCGGATCGATCGTCCGCTGGACC
CCGGGGTGCGCGTCACTGTGAAGCTCGACAAGGGAGACCCTTGCAAGAAG
AATCACAAGGGCAGGGCGGTGCCCCCTTCTGCCCCTCGAGAGGAGCTGGG
TCTCTACTGGGGCTACCAGACGAGGCTTGCAAGCGGCATGGCGGATTTGC
TGGCTGGGTGCCCCTACAAGGGCGGGGAGACCCTTGCAAGAAGAATCACA
AGGGCAGGGCGGTGCCCCCTTCTGCCCCTCGAGAGGAGCTGGGTCTCTAC
TGGGGCTACCAGACGAGGCTTGCAAGCGGCATGGCGGATTTGCTGGCTGG
GTGCCCCTACAAGGGCGGATACGACCTCACCCTGGGGACCTCAGAGCGCG
GATCTGTAACGGTCGATAGCTCGGAGTTCTCGCTGCCCAAGTACCGCCAC
GCTCTCGTTGTCTTCGGAGGCGTGCAGATACGACCTCACCCTGGGGACCT
CAGAGCGCGGATCTGTAACGGTCGATAGCTCGGAGTTCTCGCTGCCCAAG
TACCGCCACGCTCTCGTTGTCTTCGGAGGCGTGCAGGGAATCGAGGCCAC
CGTGGACGCCGACGAATCTCTGCAACTCCCGGGGAGCGAGTCGTCCGCCC
TCTTCGACATGTGGGTCAACACCTGCCCCGGCCAGGGAAGCCGGACGATC
AGGACGGAGGAGGCCGTGCTCATCACGCTCGCGCGCCTCCGGCCTCACGT
CCTTGGGAACGGCGCGGAGGACTGAGGAATCGAGGCCACCGTGGACGCCG
ACGAATCTCTGCAACTCCCGGGGAGCGAGTCGTCCGCCCTCTTCGACATG
TGGGTCAACACCTGCCCCGGCCAGGGAAGCCGGACGATCAGGACGGAGGA
GGCCGTGCTCATCACGCTCGCGCGCCTCCGGCCTCACGTCCTTGGGAACG
GCGCGGAGGACTGA
back to top