mRNA_L-elsbetiae_contig6926.15697.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6926.15697.1
Unique NamemRNA_L-elsbetiae_contig6926.15697.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig6926.15697.1 vs. uniprot
Match: A0A6H5JCK4_9PHAE (Telo_bind domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCK4_9PHAE)

HSP 1 Score: 135 bits (339), Expect = 2.580e-34
Identity = 74/109 (67.89%), Postives = 83/109 (76.15%), Query Frame = 1 
Query:   43 PGGGPVSSLGVVRSTTAPHVFDTRTRIVSHWPPKVKDFVRRGP-GWADEPCFLFTLKLEDDSGVVEAVAAGPGASRLLPGCPSPAEFLASPDVQSRVERALAGLESAGA 366
            P G  +S+L VVRST AP+VFDTR RIVSHWPPKV+DFVRRGP    D   FLFTL+LEDD GVV+A+A+GP AS LLPG PSP EF  S +VQSRVER L  LES  A
Sbjct:  823 PEGRRMSNLEVVRSTVAPNVFDTRARIVSHWPPKVEDFVRRGPESDNDRLHFLFTLRLEDDYGVVDAIASGPDASLLLPGSPSPTEFYTSLEVQSRVERVLTRLESTSA 931
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BLAST of mRNA_L-elsbetiae_contig6926.15697.1 vs. uniprot
Match: D7FIQ5_ECTSI (POT1 protection of telomeres 1 homolog n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIQ5_ECTSI)

HSP 1 Score: 83.2 bits (204), Expect = 3.960e-16
Identity = 46/73 (63.01%), Postives = 55/73 (75.34%), Query Frame = 1 
Query:  142 KVKDFVRRGPGWADEPC-FLFTLKLEDDSGVVEAVAAGPGASRLLPGCPSPAEFLASPDVQSRVERALAGLES 357
            +V+DFVR GP   +    FLFTL+LEDD GVV+A+A+GP AS LLPG PSPAEF  S +V+SRVER L  LES
Sbjct:  538 EVEDFVRHGPESDNYRLHFLFTLRLEDDYGVVDAIASGPDASLLLPGSPSPAEFYTSLEVRSRVERVLTRLES 610
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6926.15697.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JCK4_9PHAE2.580e-3467.89Telo_bind domain-containing protein n=1 Tax=Ectoca... [more]
D7FIQ5_ECTSI3.960e-1663.01POT1 protection of telomeres 1 homolog n=1 Tax=Ect... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6926contigL-elsbetiae_contig6926:3732..4661 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score82.0
Seed ortholog evalue2.1e-13
Seed eggNOG ortholog2880.D7FIQ5
Preferred namePOT1
KEGG koko:K10406,ko:K11109,ko:K22128
KEGG TC1.A.75.1
KEGG ModuleM00424
Hectar predicted targeting categoryother localisation
GOsGO:0000217,GO:0000228,GO:0000723,GO:0000781,GO:0000782,GO:0000783,GO:0000784,GO:0000785,GO:0000790,GO:0000792,GO:0003674,GO:0003676,GO:0003677,GO:0003684,GO:0003697,GO:0003723,GO:0004857,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005720,GO:0005724,GO:0006139,GO:0006259,GO:0006278,GO:0006725,GO:0006807,GO:0006996,GO:0007004,GO:0008104,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0010521,GO:0010556,GO:0010557,GO:0010558,GO:0010604,GO:0010605,GO:0010638,GO:0010639,GO:0010833,GO:0016043,GO:0016233,GO:0017151,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019899,GO:0022607,GO:0030234,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031933,GO:0031974,GO:0031981,GO:0032200,GO:0032202,GO:0032204,GO:0032205,GO:0032206,GO:0032210,GO:0032211,GO:0032212,GO:0032356,GO:0032357,GO:0032392,GO:0032508,GO:0032991,GO:0032993,GO:0033036,GO:0033043,GO:0033044,GO:0033365,GO:0034502,GO:0034613,GO:0034641,GO:0034645,GO:0034654,GO:0042162,GO:0042592,GO:0043047,GO:0043085,GO:0043086,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043565,GO:0044085,GO:0044092,GO:0044093,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0045184,GO:0045934,GO:0045935,GO:0046483,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050789,GO:0050790,GO:0050794,GO:0051052,GO:0051053,GO:0051054,GO:0051095,GO:0051096,GO:0051128,GO:0051129,GO:0051130,GO:0051171,GO:0051172,GO:0051173,GO:0051179,GO:0051234,GO:0051276,GO:0051336,GO:0051338,GO:0051345,GO:0051347,GO:0051348,GO:0051641,GO:0051972,GO:0051973,GO:0051974,GO:0060249,GO:0060255,GO:0060382,GO:0060383,GO:0061820,GO:0061821,GO:0062037,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070187,GO:0070198,GO:0070199,GO:0070200,GO:0070727,GO:0071103,GO:0071704,GO:0071840,GO:0071897,GO:0072594,GO:0080090,GO:0090304,GO:0090657,GO:0097159,GO:0098505,GO:0098687,GO:0098772,GO:0098847,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1904356,GO:1904357,GO:1904358,GO:1905462,GO:1905464,GO:1905773,GO:1905774,GO:1905776,GO:1990955,GO:2000112,GO:2000113,GO:2000278,GO:2000279,GO:2000573,GO:2001251,GO:2001252
EggNOG free text desc.positive regulation of DNA strand elongation
EggNOG OGsKOG4757@1,KOG4757@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00002,ko02000,ko03032,ko04131,ko04812
Ec32 ortholog descriptionPOT1 protection of telomeres 1 homolog
Ec32 orthologEc-27_000660.1
Exons2
Model size369
Cds size369
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816768.0173688-CDS-L-elsbetiae_contig6926:3731..38751622816768.0173688-CDS-L-elsbetiae_contig6926:3731..3875Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6926 3732..3875 +
1691683798.3621082-CDS-L-elsbetiae_contig6926:3731..38751691683798.3621082-CDS-L-elsbetiae_contig6926:3731..3875Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6926 3732..3875 +
1622816768.0337086-CDS-L-elsbetiae_contig6926:4436..46611622816768.0337086-CDS-L-elsbetiae_contig6926:4436..4661Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6926 4437..4661 +
1691683798.3750124-CDS-L-elsbetiae_contig6926:4436..46611691683798.3750124-CDS-L-elsbetiae_contig6926:4436..4661Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6926 4437..4661 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6926.15697.1prot_L-elsbetiae_contig6926.15697.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6926 3732..4661 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6926.15697.1

>prot_L-elsbetiae_contig6926.15697.1 ID=prot_L-elsbetiae_contig6926.15697.1|Name=mRNA_L-elsbetiae_contig6926.15697.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=123bp
RRGAAAEGGRGSAGPGGGPVSSLGVVRSTTAPHVFDTRTRIVSHWPPKVK
DFVRRGPGWADEPCFLFTLKLEDDSGVVEAVAAGPGASRLLPGCPSPAEF
LASPDVQSRVERALAGLESAGAD
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mRNA from alignment at L-elsbetiae_contig6926:3732..4661+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6926.15697.1 ID=mRNA_L-elsbetiae_contig6926.15697.1|Name=mRNA_L-elsbetiae_contig6926.15697.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=930bp|location=Sequence derived from alignment at L-elsbetiae_contig6926:3732..4661+ (Laminarionema elsbetiae ELsaHSoW15)
CGGAGAGGGGCGGCAGCGGAAGGGGGGCGGGGTTCAGCGGGACCGGGCGG
CGGGCCGGTGTCCAGTCTAGGAGTCGTTCGATCCACGACCGCCCCGCATG
TGTTCGATACCCGAACCAGGATTGTCTCCCACTGGCCTCCAAAGGTGAGG
TGGGAGGGAGAACAGGGCCGAGCAAGAGTCTGGTTGCTGAGGGTTGCTGA
GGAGCGCGCGCCCTCGTGTTGTGTGTGTTTTGTCGGCTGTTTTACAATAG
TGCTCTTGAATGCGTTCGTTGATGATCAGACCATGATGTGTATGCAGAGT
GTGTCCAAAGCCTTCCCACTAGAGTAGGCAGCGGCTTTGGCCATCGTTTA
GGAGGCGAGATGGATGGTAAGCCACGGTTTTATCCTTCGTGGCTGTCGGC
GTTTGTGGCGGGGGTGTAAGCATTAAGTATACGCCTTCTCTCCCCTTCTT
GCCCTGCCCGCTGGCAGCTTTTTTTCGTGTTGGTTCGTGCTCTTGCAAGG
CGTCCCCATCGTAAGGAAACACACTAAATGACACATCCTACATAAAGCAC
CCCGTTTGGTTTCGTGTACCGCCCTTGCCCACGCTCTTCCCTCATCACAG
CAATTTACTCCACATTTAGAGGTACGCATGTGTGTGGTACATACATACGT
ACGCGCCCCTCTTCCTTGGTCGCGCTTTACCGGACCGATTTTTTCTATTA
TGAAGGTGAAAGACTTCGTGCGGAGAGGTCCAGGGTGGGCGGACGAGCCG
TGCTTCCTCTTCACGCTCAAGCTCGAGGACGACTCCGGAGTCGTGGAAGC
CGTGGCAGCGGGCCCGGGCGCCTCGCGCCTGCTGCCGGGGTGCCCATCTC
CGGCAGAGTTCCTCGCCAGCCCCGACGTGCAGTCCCGGGTGGAGCGGGCC
CTGGCCGGCCTCGAGTCGGCCGGCGCGGAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6926:3732..4661+

>mRNA_L-elsbetiae_contig6926.15697.1 ID=mRNA_L-elsbetiae_contig6926.15697.1|Name=mRNA_L-elsbetiae_contig6926.15697.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=738bp|location=Sequence derived from alignment at L-elsbetiae_contig6926:3732..4661+ (Laminarionema elsbetiae ELsaHSoW15)
CGGAGAGGGGCGGCAGCGGAAGGGGGGCGGGGTTCAGCGGGACCGGGCGG
CGGGCCGGTGTCCAGTCTAGGAGTCGTTCGATCCACGACCGCCCCGCATG
TGTTCGATACCCGAACCAGGATTGTCTCCCACTGGCCTCCAAAGCGGAGA
GGGGCGGCAGCGGAAGGGGGGCGGGGTTCAGCGGGACCGGGCGGCGGGCC
GGTGTCCAGTCTAGGAGTCGTTCGATCCACGACCGCCCCGCATGTGTTCG
ATACCCGAACCAGGATTGTCTCCCACTGGCCTCCAAAGGTGAAAGACTTC
GTGCGGAGAGGTCCAGGGTGGGCGGACGAGCCGTGCTTCCTCTTCACGCT
CAAGCTCGAGGACGACTCCGGAGTCGTGGAAGCCGTGGCAGCGGGCCCGG
GCGCCTCGCGCCTGCTGCCGGGGTGCCCATCTCCGGCAGAGTTCCTCGCC
AGCCCCGACGTGCAGTCCCGGGTGGAGCGGGCCCTGGCCGGCCTCGAGTC
GGCCGGCGCGGACGTGAAAGACTTCGTGCGGAGAGGTCCAGGGTGGGCGG
ACGAGCCGTGCTTCCTCTTCACGCTCAAGCTCGAGGACGACTCCGGAGTC
GTGGAAGCCGTGGCAGCGGGCCCGGGCGCCTCGCGCCTGCTGCCGGGGTG
CCCATCTCCGGCAGAGTTCCTCGCCAGCCCCGACGTGCAGTCCCGGGTGG
AGCGGGCCCTGGCCGGCCTCGAGTCGGCCGGCGCGGAC
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