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Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | signal anchor |
| Ec32 ortholog description | Hypothetical protein |
| Ec32 ortholog | Ec-18_001790.1 |
| Exons | 4 |
| Model size | 1187 |
| Cds size | 828 |
| Stop | 0 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622816763.7555294-CDS-L-elsbetiae_contig69:2895..3011 | 1622816763.7555294-CDS-L-elsbetiae_contig69:2895..3011 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig69 2896..3011 - |
| 1691683795.3234777-CDS-L-elsbetiae_contig69:2895..3011 | 1691683795.3234777-CDS-L-elsbetiae_contig69:2895..3011 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig69 2896..3011 - |
| 1622816763.7679808-CDS-L-elsbetiae_contig69:3721..3889 | 1622816763.7679808-CDS-L-elsbetiae_contig69:3721..3889 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig69 3722..3889 - |
| 1691683795.3326008-CDS-L-elsbetiae_contig69:3721..3889 | 1691683795.3326008-CDS-L-elsbetiae_contig69:3721..3889 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig69 3722..3889 - |
| 1622816763.778767-CDS-L-elsbetiae_contig69:4316..4793 | 1622816763.778767-CDS-L-elsbetiae_contig69:4316..4793 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig69 4317..4793 - |
| 1691683795.3424528-CDS-L-elsbetiae_contig69:4316..4793 | 1691683795.3424528-CDS-L-elsbetiae_contig69:4316..4793 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig69 4317..4793 - |
| 1622816763.7890296-CDS-L-elsbetiae_contig69:4884..4951 | 1622816763.7890296-CDS-L-elsbetiae_contig69:4884..4951 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig69 4885..4951 - |
| 1691683795.3505745-CDS-L-elsbetiae_contig69:4884..4951 | 1691683795.3505745-CDS-L-elsbetiae_contig69:4884..4951 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig69 4885..4951 - |
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622816763.7999382-UTR-L-elsbetiae_contig69:4951..5309 | 1622816763.7999382-UTR-L-elsbetiae_contig69:4951..5309 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig69 4952..5309 - |
| 1691683795.36072-UTR-L-elsbetiae_contig69:4951..5309 | 1691683795.36072-UTR-L-elsbetiae_contig69:4951..5309 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig69 4952..5309 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig69.15661.1 >prot_L-elsbetiae_contig69.15661.1 ID=prot_L-elsbetiae_contig69.15661.1|Name=mRNA_L-elsbetiae_contig69.15661.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=276bp
MAAGMHHICGFLLYCSSGLSSCLYVCMYVVCIGAIFYKRGSEVPLCLCVS
RVPETPKENYCSTADGGCTNVHTRYALAKTRDGTDASNFFQPRRGHPHNI
CIATHSGYPTNIGPKEAEGVLLLHRLDALERLVFGRSCSAAGATAASVRE
VEPLAAKVETISKAVARAEGGGRDLQDLAVQASNLGLLSPASSAASIQNV
ALKENIVYAARGEIETTARLLSQVKSLQEHVNPPYLRDIPQLTRHLNRLE
GTYIRQATEAARISGRAENARLHYSK back to topmRNA from alignment at L-elsbetiae_contig69:2896..5309- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_L-elsbetiae_contig69.15661.1 ID=mRNA_L-elsbetiae_contig69.15661.1|Name=mRNA_L-elsbetiae_contig69.15661.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2414bp|location=Sequence derived from alignment at L-elsbetiae_contig69:2896..5309- (Laminarionema elsbetiae ELsaHSoW15)
AGTATGTACTATACCTTTGATTTTGTGCTGGCGAGACGCAAGACCCCCCG
GGGTCCAGTTTAGTACCACCGGGCGCGTATGTACTATATTTTTGTTTTGT
TTTTCTTCCGCGGCGTCGAGTGTGCCTTGCTTTGTGACGACGGGATGTTT
TGGACTAGAGAGCTAATGTGAGAAACAACAACAACGACCCTGTGAATTAT
ACCCTGCCATGGGGAGAGGTATCTTGATAATATGTATCCGATCCTGTGGG
GGGCGGCGGATCTTGGACCTACTTGGGCGTGCACCCGCAAACCTCTCTCT
AGATGTTCTTATCTTCCACCGCCGCTTGTGAGTACTACTCCAGTATACGT
TCTGATTCATGGCGGCAGGAATGCATCACATTTGCGGTTTCTTACTCTAT
TGCTCGTCGGGTTTGAGTTCATGTTCTTATGGTAATTTTCTCATCATTTG
GATATTTTAAGCCTGAAACTCTTAACGGCCAGATTCTTAAGTGGTGGCGC
CATCTGTATGAATGTATGTATGTATGTATGTATGTTGTATGTATCGGAGC
CATTTTCTACAAACGAGGAAGTGAAGTGCCCCTATGTTTGTGTGTGTCGC
GAGTGCCAGAGACACCCAAAGAGAATTACTGCAGCACGGCAGACGGGGGC
TGTACAAATGTACATACTCGGTACGCACTGGCGAAAACGCGAGACGGGAC
GGACGCATCTAATTTTTTCCAACCCCGTCGCGGGCATCCGCATAATATCT
GTATCGCAACCCACTCTGGTTACCCGACGAATATTGGGCCAAAGGAAGCC
GAGGGGGTGTTGCTCCTGCATCGATTAGATGCCCTAGAACGACTGGTTTT
CGGACGGTCGTGTTCAGCCGCTGGCGCTACAGCTGCCTCGGTCCGAGAAG
TGGAGCCTCTAGCAGCCAAAGTCGAAACCATCTCCAAGGCCGTAGCACGA
GCAGAGGGGGGCGGACGGGATCTGCAGGACCTTGCCGTACAAGGTGTGTT
TAGCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT
TCGTGCCTACACGAACAACGACGTTCGATGGAGCTCTTTTGTGTGTCGGG
ACACCGCGCAGCAAAGAAAATATCACGTTGTTTCATGTAGTCCAAGAAGC
GTGGAAGTCGGGTTTACCATTCCTGTCGCATGTGAGGGTGCTCTTCGTTA
CATGGAATGTAGAAGGCCGCAGTGGAAATTGTTGTCATGGCCGGGGATTT
GTCGCTACACAAGTCAATTAGTACGGAGAGATGTATTTTGTGGTTTGTAA
ATGTACTAACTGTATCATCATCGTGAAATCAACCTTTGTTTTCTATCTCT
GATTTGCCTGTCTTGTTTTCCATCCATGGTCGTATCTAACATCGTTGAAC
GCCGCCCGTGCGCATGGCAGCTTCAAATCTAGGGTTACTATCTCCAGCTT
CATCTGCAGCCTCGATCCAAAACGTAGCGCTCAAGGAGAACATCGTGTAC
GCGGCCAGGGGGGAAATCGAGACCACGGCACGCTTACTGTCGCAGGTCAA
GAGTTTGCAGGAGCACGTCAACCCCCCATATCTTAGAGGTGACTGTCTAT
TTTGGAAACATGGAACTTCACAAATAGTCTGCGGGGTTCGAGTGTGCTGG
TTGCCCTTGTGGCATCAAGGGCACGAAGGCAGTACCACGGATGGCGGGAC
AAATAGTTTGTTATTCAGAATTTGTTCTGGTCGGTCTCCCCGGCGGACTG
GTGGGTCCCTCGTTAACCCACCAGTGGCAAGCCGCAAGTTCCTTAGTTCG
ATTCCCGGTGGGGGTAGCTCTTTTGCGGCTTTGCAGTAGAAAGCGAATGG
AAACTGAAAAGCTCGTGAGTAGACAAACTTCGACTTGACCGTTGACGAGG
GAAAGGGGCAGCGCGATAAAAATCAAGGCAAGCACCGTATGTAGGAGGAA
GGTGGGGTAAACAAGAAATATAAACGAATACGAAACCCCCAGTGTTTGCC
CCCTCTTGTGTGACCCCGGCTGCTCAGTCTAGTTGCACAGAGTACATATA
TACACCGAAACGTGTGTTGTATGTAGCACACCTGAAAAAGGTGGACAGAC
GCCAGAGTAGATGGGACGAAAAACACACACTACTCCAGTTAGAAACAAGG
CTCTCAAGCTGGCGTAGGAGCCCCAGATGAATCGGCGTCTGCTATTGGGT
GTGTTGTACTGCCGCATCGCAACGAAGGCGACCGCGCACTTTCCTCTCTC
ATCCCTGGCCTCGTTCCATGCCCGCACCCAACGTCACCATGACCGCAGAT
ATCCCGCAGTTGACTCGCCACTTGAACCGATTGGAAGGCACGTATATCAG
GCAGGCCACCGAGGCAGCCCGAATCAGCGGTCGAGCTGAGAACGCTCGGC
TCCACTATAGTAAG back to topCoding sequence (CDS) from alignment at L-elsbetiae_contig69:2896..5309- >mRNA_L-elsbetiae_contig69.15661.1 ID=mRNA_L-elsbetiae_contig69.15661.1|Name=mRNA_L-elsbetiae_contig69.15661.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1656bp|location=Sequence derived from alignment at L-elsbetiae_contig69:2896..5309- (Laminarionema elsbetiae ELsaHSoW15)
ATGGCGGCAGGAATGCATCACATTTGCGGTTTCTTACTCTATTGCTCGTC
GGGTTTGAGTTCATGTTATGGCGGCAGGAATGCATCACATTTGCGGTTTC
TTACTCTATTGCTCGTCGGGTTTGAGTTCATGTTTGTATGTATGTATGTA
TGTTGTATGTATCGGAGCCATTTTCTACAAACGAGGAAGTGAAGTGCCCC
TATGTTTGTGTGTGTCGCGAGTGCCAGAGACACCCAAAGAGAATTACTGC
AGCACGGCAGACGGGGGCTGTACAAATGTACATACTCGGTACGCACTGGC
GAAAACGCGAGACGGGACGGACGCATCTAATTTTTTCCAACCCCGTCGCG
GGCATCCGCATAATATCTGTATCGCAACCCACTCTGGTTACCCGACGAAT
ATTGGGCCAAAGGAAGCCGAGGGGGTGTTGCTCCTGCATCGATTAGATGC
CCTAGAACGACTGGTTTTCGGACGGTCGTGTTCAGCCGCTGGCGCTACAG
CTGCCTCGGTCCGAGAAGTGGAGCCTCTAGCAGCCAAAGTCGAAACCATC
TCCAAGGCCGTAGCACGAGCAGAGGGGGGCGGACGGGATCTGCAGGACCT
TGCCGTACAAGTGTATGTATGTATGTATGTTGTATGTATCGGAGCCATTT
TCTACAAACGAGGAAGTGAAGTGCCCCTATGTTTGTGTGTGTCGCGAGTG
CCAGAGACACCCAAAGAGAATTACTGCAGCACGGCAGACGGGGGCTGTAC
AAATGTACATACTCGGTACGCACTGGCGAAAACGCGAGACGGGACGGACG
CATCTAATTTTTTCCAACCCCGTCGCGGGCATCCGCATAATATCTGTATC
GCAACCCACTCTGGTTACCCGACGAATATTGGGCCAAAGGAAGCCGAGGG
GGTGTTGCTCCTGCATCGATTAGATGCCCTAGAACGACTGGTTTTCGGAC
GGTCGTGTTCAGCCGCTGGCGCTACAGCTGCCTCGGTCCGAGAAGTGGAG
CCTCTAGCAGCCAAAGTCGAAACCATCTCCAAGGCCGTAGCACGAGCAGA
GGGGGGCGGACGGGATCTGCAGGACCTTGCCGTACAAGCTTCAAATCTAG
GGTTACTATCTCCAGCTTCATCTGCAGCCTCGATCCAAAACGTAGCGCTC
AAGGAGAACATCGTGTACGCGGCCAGGGGGGAAATCGAGACCACGGCACG
CTTACTGTCGCAGGTCAAGAGTTTGCAGGAGCACGTCAACCCCCCATATC
TTAGAGCTTCAAATCTAGGGTTACTATCTCCAGCTTCATCTGCAGCCTCG
ATCCAAAACGTAGCGCTCAAGGAGAACATCGTGTACGCGGCCAGGGGGGA
AATCGAGACCACGGCACGCTTACTGTCGCAGGTCAAGAGTTTGCAGGAGC
ACGTCAACCCCCCATATCTTAGAGATATCCCGCAGTTGACTCGCCACTTG
AACCGATTGGAAGGCACGTATATCAGGCAGGCCACCGAGGCAGCCCGAAT
CAGCGGTCGAGCTGAGAACGCTCGGCTCCACTATAGTAAGATATCCCGCA
GTTGACTCGCCACTTGAACCGATTGGAAGGCACGTATATCAGGCAGGCCA
CCGAGGCAGCCCGAATCAGCGGTCGAGCTGAGAACGCTCGGCTCCACTAT
AGTAAG back to top
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