mRNA_L-elsbetiae_contig6880.15640.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6880.15640.1
Unique NamemRNA_L-elsbetiae_contig6880.15640.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig6880.15640.1 vs. uniprot
Match: D8LN55_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN55_ECTSI)

HSP 1 Score: 117 bits (293), Expect = 2.530e-28
Identity = 52/98 (53.06%), Postives = 69/98 (70.41%), Query Frame = 1 
Query:   16 GGETVRRIKEDYPEALDNPLHDFFNRIEDTGIKAIVSGLVIAQAEVLLASSLNHNSAKDIPGASACQKPFSGYIELIASWRSELFRKPPQTVVRLFPF 309
            G   +  I +DYP+AL N LH FF  I+D+G++A VSGL +A ++V++ SSLN    KDIP A  C+KP+SGYI LI  WR E+  K P+TVVR+FPF
Sbjct:  339 GAAVLDLINDDYPQALHNELHHFFTEIDDSGVRAFVSGLAVASSQVMIGSSLNDPRTKDIPDAYRCEKPYSGYITLITEWREEILHKEPETVVRMFPF 436
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BLAST of mRNA_L-elsbetiae_contig6880.15640.1 vs. uniprot
Match: A0A6H5JCA8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCA8_9PHAE)

HSP 1 Score: 112 bits (280), Expect = 3.580e-26
Identity = 51/98 (52.04%), Postives = 66/98 (67.35%), Query Frame = 1 
Query:   16 GGETVRRIKEDYPEALDNPLHDFFNRIEDTGIKAIVSGLVIAQAEVLLASSLNHNSAKDIPGASACQKPFSGYIELIASWRSELFRKPPQTVVRLFPF 309
            G   +  I  DYP AL N LH FF  I+D+G++A VSGL +A ++V++ SSLN    KDI  A  C+KP+SGYI LI  WR E+  K P+TVVR+FPF
Sbjct:  464 GAAVLDLINHDYPHALHNELHQFFTEIDDSGVRAFVSGLAVASSQVMIGSSLNDPRTKDILDAYRCEKPYSGYITLITEWREEILHKEPETVVRMFPF 561
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6880.15640.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LN55_ECTSI2.530e-2853.06Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JCA8_9PHAE3.580e-2652.04Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6880contigL-elsbetiae_contig6880:5749..7740 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size425
Cds size423
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816761.4377606-CDS-L-elsbetiae_contig6880:5748..60721622816761.4377606-CDS-L-elsbetiae_contig6880:5748..6072Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6880 5749..6072 -
1691683793.627255-CDS-L-elsbetiae_contig6880:5748..60721691683793.627255-CDS-L-elsbetiae_contig6880:5748..6072Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6880 5749..6072 -
1622816761.4516237-CDS-L-elsbetiae_contig6880:7641..77401622816761.4516237-CDS-L-elsbetiae_contig6880:7641..7740Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6880 7642..7740 -
1691683793.6381826-CDS-L-elsbetiae_contig6880:7641..77401691683793.6381826-CDS-L-elsbetiae_contig6880:7641..7740Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6880 7642..7740 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6880.15640.1prot_L-elsbetiae_contig6880.15640.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6880 5749..7740 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6880.15640.1

>prot_L-elsbetiae_contig6880.15640.1 ID=prot_L-elsbetiae_contig6880.15640.1|Name=mRNA_L-elsbetiae_contig6880.15640.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=141bp
VQKRIGGETVRRIKEDYPEALDNPLHDFFNRIEDTGIKAIVSGLVIAQAE
VLLASSLNHNSAKDIPGASACQKPFSGYIELIASWRSELFRKPPQTVVRL
FPFGDAVVDPAAAGIAASTDSDNVVEHDGEGAMMEVEEDSE
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mRNA from alignment at L-elsbetiae_contig6880:5749..7740-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6880.15640.1 ID=mRNA_L-elsbetiae_contig6880.15640.1|Name=mRNA_L-elsbetiae_contig6880.15640.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1992bp|location=Sequence derived from alignment at L-elsbetiae_contig6880:5749..7740- (Laminarionema elsbetiae ELsaHSoW15)
GTCCAAAAAAGGATCGGTGGAGAGACGGTAAGGCGAATAAAGGAGGATTA
CCCCGAGGCGCTGGACAACCCGCTGCATGACTTCTTCAACCGCATAGAGG
TGAGGGGTGGCTCTAGATTGTTCGTGTGTTGTCGCGGTGGTGGTCTTGCA
CACCATAAGGACATAGCAGACAGGCACCGCAGGAGGGGCCCCTCCTGTGC
GACCCCGGTTGGGTCGTCTAGCTAAGTAGTCGTAGTGGAGGAAGCGGGGC
CAGCGGGGCAGACAACGAGTGAGCCGATAATGGAAAGCACAAAAAAAAAC
ATGTCAAGAGAGGTTGATGTCCCTCATGTTCGCGGTGTCTCTGGTAAGAG
TAGAGCCCGTACTCGAGAGGGCTGTCCTGTGGAGTCAAGCGCTGTCCGGT
AGTTTCAGGCAAGCGTCAATTACTAAGGGTACGGTAAGGGGTACCCATTG
CTCAGTACAAGCCTTTCTCGAATAATAATCACATACCCCCGCTGAACATC
ACGGAGCCTCACTTGAAGTATGCGTGGGCTCTCCAAAAATGCCCGCATGT
TTTGACAGTGCAGCCAAAAAACAGAGGTGTTCGGAGATTGTCGGCTCTTT
TTTGCCGTGTTTGCGGGGAGGTTTTTGCCCACCCCTTGCGCGTGTGAACT
GTGTAGTATGCACAAAGTTGCTGTGCGTAGTATGCACTCTTTTAAAACAG
CCGGGCTCCATTCGCGTCGAGTCCGTTTCTTGATGGAGGCAAAAAGCACG
GCGTGAGGCTCCGGGGCGTGGCTTGAAATATTCACCCGATGAACCGAGAA
GAGAACGGATCGCTCGTGCGCACCAGACCATCGAAAGCGTGGCTTATAAC
TACCTGCTGCTGCTGCTAAGGACATGCGGCAGCCCCTACACACCATATCA
GTAGGCGCTCGCAGCATCTTTCGCTGTTCTTGCGTGTGAGGAGCGAGCTA
TCTGATGTCTTGAGCACCAAGTTGTCAGTTCGGTCTTGCTTTGACAGTCC
TGTTAAATCAGTGATTTTTGCACCTTCCGAGAGGAAAATCTTCGCCATCA
AGACAGCCAAGAATTAGGAGCGAGGATTTTTCGGTAGAGAACTGCGAACT
GTGGCGATGGGGTGGGTGATTTCATATAGCGGGACGCTAAGGGCCGGCCT
GGAAAGTGGTGCTTCTGGGAGGGGGGTCCGTGCAGTCAGTTTTCGCATAC
CCAACAAAATGTGCATTCAAAAAATCAATCAAATCGTGCTCGCCACTGAG
CCCCTGGATCCAAAGTACACTGTGCCCGCCCTCCCCCCGTAACCGTCGCC
GTAAGGGGGGTTTCAAACGCTCCAAAAACCCTTTTTAATTATTGCATACA
AATGTCAGCAACCTCCGTCCAGTCTGTGAAAAAGTCGTTCCAGAGAGAAC
TGTTGTATGTTCCAATTTTTTGAAAGTGACCGTTCCAAACATTCTGACCC
CCCGTTAGTTCTTTCCAAATTTTTGGAAGTTCCAAATTTGAATCTTTCTC
TATGTATTTAGGGCGCCCCGCCGCAAACCGCCGGCCCGTGTTTTTTTCTT
GTTCCGAAAGTTTGGAAACTTGGGCAAAAAGCAAAAAGCCCCGCGTTTAA
AACGCTCCTCAAAGGCGTGTCCCCCTCTCGTCTCCCCCGACTCCCTCGGG
CACGGAAACGCACACCAGGACACCGGGATCAAGGCCATTGTCAGCGGGCT
GGTGATCGCGCAGGCCGAGGTGCTGCTCGCGTCCTCCCTCAACCACAACT
CCGCCAAAGACATCCCGGGAGCTTCCGCGTGCCAGAAGCCCTTCTCGGGG
TACATCGAGCTCATCGCCTCGTGGCGGTCGGAGCTGTTCCGAAAGCCTCC
GCAGACGGTCGTGAGGCTGTTCCCCTTCGGGGACGCGGTCGTCGACCCTG
CGGCGGCGGGGATCGCCGCGAGCACGGACAGCGACAACGTCGTGGAGCAC
GACGGCGAAGGGGCGATGATGGAGGTGGAGGAAGACTCGGAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6880:5749..7740-

>mRNA_L-elsbetiae_contig6880.15640.1 ID=mRNA_L-elsbetiae_contig6880.15640.1|Name=mRNA_L-elsbetiae_contig6880.15640.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=846bp|location=Sequence derived from alignment at L-elsbetiae_contig6880:5749..7740- (Laminarionema elsbetiae ELsaHSoW15)
GTCCAAAAAAGGATCGGTGGAGAGACGGTAAGGCGAATAAAGGAGGATTA
CCCCGAGGCGCTGGACAACCCGCTGCATGACTTCTTCAACCGCATAGAGG
TCCAAAAAAGGATCGGTGGAGAGACGGTAAGGCGAATAAAGGAGGATTAC
CCCGAGGCGCTGGACAACCCGCTGCATGACTTCTTCAACCGCATAGAGGA
CACCGGGATCAAGGCCATTGTCAGCGGGCTGGTGATCGCGCAGGCCGAGG
TGCTGCTCGCGTCCTCCCTCAACCACAACTCCGCCAAAGACATCCCGGGA
GCTTCCGCGTGCCAGAAGCCCTTCTCGGGGTACATCGAGCTCATCGCCTC
GTGGCGGTCGGAGCTGTTCCGAAAGCCTCCGCAGACGGTCGTGAGGCTGT
TCCCCTTCGGGGACGCGGTCGTCGACCCTGCGGCGGCGGGGATCGCCGCG
AGCACGGACAGCGACAACGTCGTGGAGCACGACGGCGAAGGGGCGATGAT
GGAGGTGGAGGAAGACTCGGAGGACACCGGGATCAAGGCCATTGTCAGCG
GGCTGGTGATCGCGCAGGCCGAGGTGCTGCTCGCGTCCTCCCTCAACCAC
AACTCCGCCAAAGACATCCCGGGAGCTTCCGCGTGCCAGAAGCCCTTCTC
GGGGTACATCGAGCTCATCGCCTCGTGGCGGTCGGAGCTGTTCCGAAAGC
CTCCGCAGACGGTCGTGAGGCTGTTCCCCTTCGGGGACGCGGTCGTCGAC
CCTGCGGCGGCGGGGATCGCCGCGAGCACGGACAGCGACAACGTCGTGGA
GCACGACGGCGAAGGGGCGATGATGGAGGTGGAGGAAGACTCGGAG
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