mRNA_L-elsbetiae_contig680.15563.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig680.15563.1
Unique NamemRNA_L-elsbetiae_contig680.15563.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig680.15563.1 vs. uniprot
Match: D8LU14_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU14_ECTSI)

HSP 1 Score: 54.7 bits (130), Expect = 7.540e-8
Identity = 27/47 (57.45%), Postives = 33/47 (70.21%), Query Frame = 2 
Query:   11 LQENGFLDDFFGCLGFLSLANESTIRRAMVCIMLAVET-QQPALDGG 148
            +QEN FL DFFGC+GFL L N+STIR  MV I+    T Q+P + GG
Sbjct:    1 MQENAFLSDFFGCVGFLPLTNQSTIREVMVQILTTPATLQRPPVAGG 47
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BLAST of mRNA_L-elsbetiae_contig680.15563.1 vs. uniprot
Match: D8LU16_ECTSI (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU16_ECTSI)

HSP 1 Score: 55.1 bits (131), Expect = 9.740e-7
Identity = 28/55 (50.91%), Postives = 36/55 (65.45%), Query Frame = 2 
Query:    2 LIGLQENGFLDDFFGCLGFLSLANESTIRRAMVCIMLAVETQQPALDG----GGP 154
            L+G+QEN FL DFFGC+GFL L  +S IR  MV IM++   +Q  + G    GGP
Sbjct:  120 LVGMQENAFLSDFFGCVGFLPLTTQSHIRETMVNIMVSPAIRQSFVGGDFGAGGP 174
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BLAST of mRNA_L-elsbetiae_contig680.15563.1 vs. uniprot
Match: A0A6H5L0W7_9PHAE (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0W7_9PHAE)

HSP 1 Score: 54.7 bits (130), Expect = 1.360e-6
Identity = 24/37 (64.86%), Postives = 29/37 (78.38%), Query Frame = 2 
Query:    2 LIGLQENGFLDDFFGCLGFLSLANESTIRRAMVCIML 112
            L+G+QENGFL  FFGCLG L L  EST+R AMV +M+
Sbjct:  175 LVGMQENGFLGAFFGCLGILPLTTESTVRNAMVEVMM 211
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BLAST of mRNA_L-elsbetiae_contig680.15563.1 vs. uniprot
Match: A0A6H5L0K0_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0K0_9PHAE)

HSP 1 Score: 54.7 bits (130), Expect = 1.370e-6
Identity = 24/37 (64.86%), Postives = 29/37 (78.38%), Query Frame = 2 
Query:    2 LIGLQENGFLDDFFGCLGFLSLANESTIRRAMVCIML 112
            L+G+ ENGFL DFFGCLG L L  EST+R AMV +M+
Sbjct:  176 LVGMPENGFLCDFFGCLGILPLTTESTVRNAMVEVMM 212
[Close]
BLAST of mRNA_L-elsbetiae_contig680.15563.1 vs. uniprot
Match: D8LCV1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCV1_ECTSI)

HSP 1 Score: 54.3 bits (129), Expect = 1.720e-6
Identity = 26/48 (54.17%), Postives = 32/48 (66.67%), Query Frame = 2 
Query:    2 LIGLQENGFLDDFFGCLGFLSLANESTIRRAMVCIMLAVETQQPALDG 145
            L+G+QEN FL DFFGC+GFL L   S IR  MV IML   + Q ++ G
Sbjct:   21 LVGMQENAFLSDFFGCVGFLPLTTPSHIRETMVTIMLPRASSQQSVFG 68
[Close]
BLAST of mRNA_L-elsbetiae_contig680.15563.1 vs. uniprot
Match: D7FTD5_ECTSI (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTD5_ECTSI)

HSP 1 Score: 53.9 bits (128), Expect = 2.080e-6
Identity = 24/40 (60.00%), Postives = 30/40 (75.00%), Query Frame = 2 
Query:    2 LIGLQENGFLDDFFGCLGFLSLANESTIRRAMVCIMLAVE 121
            L+G++E+GFL DFFGC G L L  EST+R AMV IM+  E
Sbjct:  152 LVGMKESGFLCDFFGCFGILPLTTESTVRNAMVEIMMGAE 191
[Close]
BLAST of mRNA_L-elsbetiae_contig680.15563.1 vs. uniprot
Match: D7FTE0_ECTSI (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTE0_ECTSI)

HSP 1 Score: 53.1 bits (126), Expect = 4.750e-6
Identity = 23/37 (62.16%), Postives = 28/37 (75.68%), Query Frame = 2 
Query:    2 LIGLQENGFLDDFFGCLGFLSLANESTIRRAMVCIML 112
            L+G+ ENGFL DFFGC G L L  EST+R AMV +M+
Sbjct:  175 LVGMPENGFLCDFFGCFGILPLTTESTVRNAMVEVMM 211
[Close]
BLAST of mRNA_L-elsbetiae_contig680.15563.1 vs. uniprot
Match: D8LU09_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU09_ECTSI)

HSP 1 Score: 52.8 bits (125), Expect = 6.330e-6
Identity = 29/57 (50.88%), Postives = 37/57 (64.91%), Query Frame = 2 
Query:    2 LIGLQENGFLDDFFGCLGFLSLANESTIRRAMVCIMLA-VETQQPALDG--GGPATM 163
            L+G+QEN FL DFFGC+GF+ L + S IR  MV IM +    QQ A+ G  GG  +M
Sbjct:   17 LVGMQENAFLSDFFGCVGFVPLTSHSHIRETMVKIMASPAPLQQSAIGGAFGGVGSM 73
[Close]
BLAST of mRNA_L-elsbetiae_contig680.15563.1 vs. uniprot
Match: A0A6H5K678_9PHAE (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K678_9PHAE)

HSP 1 Score: 52.8 bits (125), Expect = 6.440e-6
Identity = 27/38 (71.05%), Postives = 28/38 (73.68%), Query Frame = 2 
Query:    2 LIGLQENGFLDDFFGCLGFLSLANESTIRRAMVCIMLA 115
            L GL EN  L DFFGCLGFLSLA ES IR AMV +M A
Sbjct:  221 LAGLLENELLGDFFGCLGFLSLATESIIRGAMVSVMRA 258
[Close]
BLAST of mRNA_L-elsbetiae_contig680.15563.1 vs. uniprot
Match: D7FTD9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTD9_ECTSI)

HSP 1 Score: 52.4 bits (124), Expect = 8.700e-6
Identity = 23/34 (67.65%), Postives = 27/34 (79.41%), Query Frame = 2 
Query:   11 LQENGFLDDFFGCLGFLSLANESTIRRAMVCIML 112
            +QENGFL DFFGCLG L L  EST+R AMV +M+
Sbjct:    1 MQENGFLGDFFGCLGVLPLTTESTVRNAMVEVMM 34
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig680.15563.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
D8LU14_ECTSI7.540e-857.45Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LU16_ECTSI9.740e-750.91Zn(2)-C6 fungal-type domain-containing protein n=1... [more]
A0A6H5L0W7_9PHAE1.360e-664.86Zn(2)-C6 fungal-type domain-containing protein n=1... [more]
A0A6H5L0K0_9PHAE1.370e-664.86Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
D8LCV1_ECTSI1.720e-654.17Uncharacterized protein n=2 Tax=Ectocarpus silicul... [more]
D7FTD5_ECTSI2.080e-660.00Zn(2)-C6 fungal-type domain-containing protein n=1... [more]
D7FTE0_ECTSI4.750e-662.16Zn(2)-C6 fungal-type domain-containing protein n=1... [more]
D8LU09_ECTSI6.330e-650.88Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K678_9PHAE6.440e-671.05Zn(2)-C6 fungal-type domain-containing protein n=1... [more]
D7FTD9_ECTSI8.700e-667.65Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig680contigL-elsbetiae_contig680:23940..26439 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size284
Cds size282
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816753.527386-CDS-L-elsbetiae_contig680:23939..240171622816753.527386-CDS-L-elsbetiae_contig680:23939..24017Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig680 23940..24017 +
1691683787.7482772-CDS-L-elsbetiae_contig680:23939..240171691683787.7482772-CDS-L-elsbetiae_contig680:23939..24017Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig680 23940..24017 +
1622816753.5384064-CDS-L-elsbetiae_contig680:26234..264381622816753.5384064-CDS-L-elsbetiae_contig680:26234..26438Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig680 26235..26438 +
1691683787.7584872-CDS-L-elsbetiae_contig680:26234..264381691683787.7584872-CDS-L-elsbetiae_contig680:26234..26438Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig680 26235..26438 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig680.15563.1prot_L-elsbetiae_contig680.15563.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig680 23940..26438 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig680.15563.1

>prot_L-elsbetiae_contig680.15563.1 ID=prot_L-elsbetiae_contig680.15563.1|Name=mRNA_L-elsbetiae_contig680.15563.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=94bp
SDRPAGERLSGRLFRVLGLPVPRQREHHPESDGVHHARGRDAAAGPGRRG
AGNDGGARARRRGRTFSLSEEWDDGGRGGGRRPGRGSRRVVDSR
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mRNA from alignment at L-elsbetiae_contig680:23940..26439+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig680.15563.1 ID=mRNA_L-elsbetiae_contig680.15563.1|Name=mRNA_L-elsbetiae_contig680.15563.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2500bp|location=Sequence derived from alignment at L-elsbetiae_contig680:23940..26439+ (Laminarionema elsbetiae ELsaHSoW15)
TCTGATAGGCCTGCAGGAGAACGGCTTTCTGGACGACTTTTTCGGGTGCT
TGGGCTTCCTGTCCCTCGCCAACGAGAGGTGAGGTGGGGTGTGCCTCCGG
ACGCGACCGATCGCGAGTTGGTGGTGGAAATCAACCCAACGCGTGCCGTT
TTATGCATATATATATATGCACTTCGAAGTATGCACACATACATACGTGC
ATCTATCTATCTGTACGTGCCCCCCATGTATCATGCTCCCGCTGTCTTGG
CAAGGATTGCTGCTTTTTATTTTTTTCTTTGTTTTTTTTTGCCTTTCGCG
TTGGCTGCTTGCTTGTTGTGTGCGAACCGCGGACCGGGGGCGAACGGCTT
GTCATCGCGCTGCAGGGGGTCGCTCACCACACTCCCCTTACCCCCCCCGA
GACATACGCTGCGTCGTTTTGTTTTTGTGTTTTCGTGTTTAGTTGGTGGG
CGTTACAGGTAGTGTCGTAACGTTATTTGAAGCCTCTTGATGTCTGGTGG
TAAAAAAGATGACCGTGGTATCCGTGAGGAAGAGGATGATGGTGTTAGGA
GATGTACTGCTGTCTGTCAGTCTGGTACATACTTGGTTAACCTTTTTACC
TCATGGCTGAGTGGTCTAAGTAACCCCCTCAATAATATGGCGTCGCCTAG
GACAGCAGTCGTGGGTGCAACCCTCGTATCGACTCCAACAAGCGTTGAAA
GTGCTGTTTTTCGACTACTGTGCGTCGTTTTACTCTTGTGTGAGTAGGCG
GCTTGCCCCTTGGTAAAAACTGAGCGTGGTATCCGTGAGGAAGAAGGGGT
GACGTAATCGTAAAGATTGACCGCCAAGACTCCAACTGGCGTCCTGCACT
AGAGCCCCGATTCTCAAAAAGAGCTGTGGGGGTAGCCGGGGGGGGGGGTA
TTTATCTAGGAAATAGAGTGAAAATTCCCCCACAGTGCCACTTTTTCGGA
ACTGGGGGCCCCGCTGCAGGAAGCCCATGCAAGACAAAAAGCATCCCGCA
TTTGCCTATACTTCTGGTAAACCAAACCGATACGATGGTCTGGTCCTCCT
GTGGCCGCGGGTGGTCACTTTCTACACCCCATTGCTCTGTATGTAGCTTG
TCACCTGCCGCTCGTGGCGGTAGATAGATGCCACAAGCGTGCGGTGATTT
TTGAAGGCCCGATATCTCGACCACGGGGAGGGGGCCAAATGAAGGAGAAG
GGTGTTGTTGGGATACATAAGTAGGCTTTCTCTGCAGCAGTGCCCCCAAT
TCTGAAAAGTGGCTGTGGGGGAGGGGGGGGGGGGGGGGGGGGCCCATTTT
TCCTCTTTTTTTTTTCTTGAAAAAACCCCCCCCCCCCCCCCGCCCCCCCC
ACCCCGTTTNNNNNNNNNNGCGGCCGCGATGGTCGCTGTGTCTAGGTAGT
GGGGGGGTGGGGTGGGGTGGGACTGGGCGGCATCATTTTTCACTCTATTT
ATTTCCTAGATAAATACCCCCCCCCCCGCTGCCCCCACAGCTCTTTTTGA
GAATTGAGTGCTAGCTCTATTGCAGGAAGCCGATGCCTTAGTCAAAAATC
CGGTGTTCTACCCAGATCGGTACAATACTTACCCATCCCCATTGTAGAGA
AGTCGGGCCGCGAACAGCTGTCGCAACCCCTGAGCATATTTACGCTCAAC
TTACGGTATGTGGAGGACCACTGGGGACCAAATGTTAGGATTTTCTGCCC
CCAAGACGGTGAGCGGGGCTGCTGAAACTGTTTATCACCGCCCCGGAGCC
CCTCCCTGCGGTTCTTTGTTGAATGTATGTTAGGTATGGGCATGCTATGT
ACATACACCGCGAAACTGCAGTTTTTTCTTCCTTCTCTGGACCGTCCCCG
TGAAAGAAAGGACTACGGCCGCCCCCCCCCCCCTGGTCTCTTCCACGCCT
CCGCCCTTGGCGTCGCTTCCTCTCTGCGAGGAAAAGCCGATGCCCGCCGC
CAGCGCGAAAGTGCGGTGTGCTGTGCTGTGCTGTGCTGTGCTGTGCTGTG
CTGTGCTGTGCTGTGCTGTGATGAACCGCCTCCTCCCTTCCGCGTTCCGT
CCTGCCAAACCGCCAACCTCCCCGAACATCCCACCCGTGTCGTGCTCAAT
ACGCGCTTGCCTCCCCCCCCCCCCCCCCCCCCCCCACCCCCCCCCCCCCC
CACGACCACCACCCCCCCCCCCCCCCCCCCCACCCCCCCCCCCCCCCCCC
GCACCCCCACCCCGGGGCCCCCCCAACCCCCCCCCCCCCCTCTCTTGTCA
CCTTTCCTTCCCCCCCCCCCACCCCCCCGCCCCATCGGCACACAGCACCA
TCCGGAGAGCGATGGTGTGCATCATGCTCGCGGTCGAGACGCAGCAGCCG
GCCCTGGACGGAGGGGGGCCGGCAACGATGGCGGCGCCCGCGCACGGAGG
CGAGGTCGTACCTTCTCGTTGTCCGAGGAATGGGACGATGGAGGGAGAGG
AGGAGGAAGAAGACCTGGAAGGGGAAGTAGACGCGTCGTCGACAGCAGGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig680:23940..26439+

>mRNA_L-elsbetiae_contig680.15563.1 ID=mRNA_L-elsbetiae_contig680.15563.1|Name=mRNA_L-elsbetiae_contig680.15563.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=564bp|location=Sequence derived from alignment at L-elsbetiae_contig680:23940..26439+ (Laminarionema elsbetiae ELsaHSoW15)
TCTGATAGGCCTGCAGGAGAACGGCTTTCTGGACGACTTTTTCGGGTGCT
TGGGCTTCCTGTCCCTCGCCAACGAGAGTCTGATAGGCCTGCAGGAGAAC
GGCTTTCTGGACGACTTTTTCGGGTGCTTGGGCTTCCTGTCCCTCGCCAA
CGAGAGCACCATCCGGAGAGCGATGGTGTGCATCATGCTCGCGGTCGAGA
CGCAGCAGCCGGCCCTGGACGGAGGGGGGCCGGCAACGATGGCGGCGCCC
GCGCACGGAGGCGAGGTCGTACCTTCTCGTTGTCCGAGGAATGGGACGAT
GGAGGGAGAGGAGGAGGAAGAAGACCTGGAAGGGGAAGTAGACGCGTCGT
CGACAGCAGGCACCATCCGGAGAGCGATGGTGTGCATCATGCTCGCGGTC
GAGACGCAGCAGCCGGCCCTGGACGGAGGGGGGCCGGCAACGATGGCGGC
GCCCGCGCACGGAGGCGAGGTCGTACCTTCTCGTTGTCCGAGGAATGGGA
CGATGGAGGGAGAGGAGGAGGAAGAAGACCTGGAAGGGGAAGTAGACGCG
TCGTCGACAGCAGG
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