mRNA_L-elsbetiae_contig6787.15540.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6787.15540.1
Unique NamemRNA_L-elsbetiae_contig6787.15540.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6787.15540.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6787contigL-elsbetiae_contig6787:976..1435 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size460
Cds size336
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6787.15540.1prot_L-elsbetiae_contig6787.15540.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6787 1002..1337 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816751.5500383-UTR-L-elsbetiae_contig6787:975..10011622816751.5500383-UTR-L-elsbetiae_contig6787:975..1001Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6787 976..1001 +
1691683786.1964552-UTR-L-elsbetiae_contig6787:975..10011691683786.1964552-UTR-L-elsbetiae_contig6787:975..1001Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6787 976..1001 +
1622816751.5760796-UTR-L-elsbetiae_contig6787:1337..14351622816751.5760796-UTR-L-elsbetiae_contig6787:1337..1435Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6787 1338..1435 +
1691683786.2282772-UTR-L-elsbetiae_contig6787:1337..14351691683786.2282772-UTR-L-elsbetiae_contig6787:1337..1435Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6787 1338..1435 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816751.564391-CDS-L-elsbetiae_contig6787:1001..13371622816751.564391-CDS-L-elsbetiae_contig6787:1001..1337Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6787 1002..1337 +
1691683786.2129803-CDS-L-elsbetiae_contig6787:1001..13371691683786.2129803-CDS-L-elsbetiae_contig6787:1001..1337Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6787 1002..1337 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6787.15540.1

>prot_L-elsbetiae_contig6787.15540.1 ID=prot_L-elsbetiae_contig6787.15540.1|Name=mRNA_L-elsbetiae_contig6787.15540.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=112bp
MRKTPEHTTRNESTTLSKAKFICTTKTPLASEICRLRHGSSTSDAEDTRT
HHHTKAKHYFEQGKVYLYHQNMPHNTKHPQPDVNDNMRLFIGGSDEVDSW
DSCWRPALRKH*
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mRNA from alignment at L-elsbetiae_contig6787:976..1435+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6787.15540.1 ID=mRNA_L-elsbetiae_contig6787.15540.1|Name=mRNA_L-elsbetiae_contig6787.15540.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=460bp|location=Sequence derived from alignment at L-elsbetiae_contig6787:976..1435+ (Laminarionema elsbetiae ELsaHSoW15)
GCTGAGGCACGGCAGTAGCACATCTGATGCGGAAGACGCCAGAACACACC
ACACGAAATGAAAGCACTACTTTGAGCAAGGCAAAGTTTATCTGTACCAC
CAAGACACCACTCGCATCGGAAATCTGCCGGCTGAGGCACGGCAGTAGCA
CATCTGATGCGGAAGACACCAGAACACACCACCACACGAAAGCAAAGCAC
TACTTTGAGCAAGGCAAAGTTTATCTGTACCACCAAAATATGCCACACAA
CACCAAGCACCCCCAACCCGATGTCAACGACAACATGCGACTTTTTATCG
GTGGATCAGACGAGGTTGATAGTTGGGATAGTTGCTGGCGGCCCGCTCTG
CGAAAGCACTAGGCAAAGTGCATCTGTACCACCAAAATATGCCACACAAC
ACCAAGCACCCCCAACCCGATGTCAACGGCAACATGCGACTTTTTATCGG
TGGATCAAAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6787:976..1435+

>mRNA_L-elsbetiae_contig6787.15540.1 ID=mRNA_L-elsbetiae_contig6787.15540.1|Name=mRNA_L-elsbetiae_contig6787.15540.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=672bp|location=Sequence derived from alignment at L-elsbetiae_contig6787:976..1435+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCGGAAGACGCCAGAACACACCACACGAAATGAAAGCACTACTTTGAG
CAAGGCAAAGTTTATCTGTACCACCAAGACACCACTCGCATCGGAAATCT
GCCGGCTGAGGCACGGCAGTAGCACATCTGATGCGGAAGACACCAGAACA
CACCACCACACGAAAGCAAAGCACTACTTTGAGCAAGGCAAAGTTTATCT
GTACCACCAAAATATGCCACACAACACCAAGCACCCCCAACCCGATGTCA
ACGACAACATGCGACTTTTTATCGGTGGATCAGACGAGGTTGATAGTTGG
GATAGTTGCTGGCGGCCCGCTCTGCGAAAGCACTAGATGCGGAAGACGCC
AGAACACACCACACGAAATGAAAGCACTACTTTGAGCAAGGCAAAGTTTA
TCTGTACCACCAAGACACCACTCGCATCGGAAATCTGCCGGCTGAGGCAC
GGCAGTAGCACATCTGATGCGGAAGACACCAGAACACACCACCACACGAA
AGCAAAGCACTACTTTGAGCAAGGCAAAGTTTATCTGTACCACCAAAATA
TGCCACACAACACCAAGCACCCCCAACCCGATGTCAACGACAACATGCGA
CTTTTTATCGGTGGATCAGACGAGGTTGATAGTTGGGATAGTTGCTGGCG
GCCCGCTCTGCGAAAGCACTAG
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