mRNA_L-elsbetiae_contig6760.15515.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6760.15515.1
Unique NamemRNA_L-elsbetiae_contig6760.15515.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6760.15515.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6760contigL-elsbetiae_contig6760:83..367 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size257
Cds size255
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816749.0175827-CDS-L-elsbetiae_contig6760:84..2161622816749.0175827-CDS-L-elsbetiae_contig6760:84..216Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6760 85..216 -
1691683784.257231-CDS-L-elsbetiae_contig6760:84..2161691683784.257231-CDS-L-elsbetiae_contig6760:84..216Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6760 85..216 -
1622816749.0319796-CDS-L-elsbetiae_contig6760:244..3671622816749.0319796-CDS-L-elsbetiae_contig6760:244..367Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6760 245..367 -
1691683784.2721653-CDS-L-elsbetiae_contig6760:244..3671691683784.2721653-CDS-L-elsbetiae_contig6760:244..367Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6760 245..367 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6760.15515.1prot_L-elsbetiae_contig6760.15515.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6760 85..367 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6760.15515.1

>prot_L-elsbetiae_contig6760.15515.1 ID=prot_L-elsbetiae_contig6760.15515.1|Name=mRNA_L-elsbetiae_contig6760.15515.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=85bp
YKVPLREVSACLPGVTQVEIPTNNVGHEIALHTKGVARKKNKAVPGFEPA
SGYSMVWTEAIPRNTPRDFFLFACAICRVWPATSA
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mRNA from alignment at L-elsbetiae_contig6760:83..367-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6760.15515.1 ID=mRNA_L-elsbetiae_contig6760.15515.1|Name=mRNA_L-elsbetiae_contig6760.15515.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=285bp|location=Sequence derived from alignment at L-elsbetiae_contig6760:83..367- (Laminarionema elsbetiae ELsaHSoW15)
TACAAGGTTCCCCTTCGGGAGGTCAGCGCGTGCCTCCCGGGGGTGACGCA
AGTCGAAATACCCACAAACAACGTAGGACACGAGATAGCACTTCACACAA
AAGGTGTTGCACGAAAAAAAAACGCACGAAAAAAGCATTTAAAAAACAAA
GAAGGCCGTGCCGGGATTCGAACCCGCGTCCGGATATTCGATGGTTTGGA
CGGAAGCAATTCCCCGCAACACCCCGCGAGATTTTTTTTTATTTGCATGT
GCCATCTGCCGTGTGTGGCCTGCAACATCCGCGTT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6760:83..367-

>mRNA_L-elsbetiae_contig6760.15515.1 ID=mRNA_L-elsbetiae_contig6760.15515.1|Name=mRNA_L-elsbetiae_contig6760.15515.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=510bp|location=Sequence derived from alignment at L-elsbetiae_contig6760:83..367- (Laminarionema elsbetiae ELsaHSoW15)
TACAAGGTTCCCCTTCGGGAGGTCAGCGCGTGCCTCCCGGGGGTGACGCA
AGTCGAAATACCCACAAACAACGTAGGACACGAGATAGCACTTCACACAA
AAGGTGTTGCACGAAAAAAAAACTACAAGGTTCCCCTTCGGGAGGTCAGC
GCGTGCCTCCCGGGGGTGACGCAAGTCGAAATACCCACAAACAACGTAGG
ACACGAGATAGCACTTCACACAAAAGGTGTTGCACGAAAAAAAAACAAGG
CCGTGCCGGGATTCGAACCCGCGTCCGGATATTCGATGGTTTGGACGGAA
GCAATTCCCCGCAACACCCCGCGAGATTTTTTTTTATTTGCATGTGCCAT
CTGCCGTGTGTGGCCTGCAACATCCGCGAAGGCCGTGCCGGGATTCGAAC
CCGCGTCCGGATATTCGATGGTTTGGACGGAAGCAATTCCCCGCAACACC
CCGCGAGATTTTTTTTTATTTGCATGTGCCATCTGCCGTGTGTGGCCTGC
AACATCCGCG
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