mRNA_L-elsbetiae_contig6756.15505.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6756.15505.1
Unique NamemRNA_L-elsbetiae_contig6756.15505.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig6756.15505.1 vs. uniprot
Match: A0A6H5KD78_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD78_9PHAE)

HSP 1 Score: 93.2 bits (230), Expect = 2.150e-18
Identity = 86/220 (39.09%), Postives = 102/220 (46.36%), Query Frame = -1 
Query:    1 AERRLRVDQDDPTPPPGCPSRLVELLEEALRVEARSNNMAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDDGTNGDATQKDG-----------RNGGVFAGRRPAPSSASGRSPXXXXXXXXXXLIADGAAAAVNRARSRAERGDGQGNGLGRERWEATLGRGVLPTWLGGVAEVEWEEGPTNSKAATAAMS------------MPRSLVAQQA 591
            A+RR R++ +DP PPP CPSRLVELLEEALRVEAR    A                              XXXXX  G   D   K G           R   ++    P+                   L+ DGAAAA +RARSRAERGDG+GNG  RE WE +LG GVLP+WL G+A     E     +AA A               +PRS+VAQQA
Sbjct:  545 AKRRGRINPEDPIPPPRCPSRLVELLEEALRVEAR--RPAAPSRRIPPAGAGGPAPAAREGTPVAVASTAXXXXXXXGYASDGGSKAGNXXXXXXXXXWRRLRLWQSTAPSEEEEKPGHDSNWSPAVAVALLQDGAAAAEDRARSRAERGDGKGNG--RELWEPSLGGGVLPSWLSGIAADWGREIAAKQQAAAAGAVXXXXXXXXXVAVLPRSVVAQQA 760
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BLAST of mRNA_L-elsbetiae_contig6756.15505.1 vs. uniprot
Match: D7G308_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G308_ECTSI)

HSP 1 Score: 88.2 bits (217), Expect = 1.140e-16
Identity = 79/183 (43.17%), Postives = 93/183 (50.82%), Query Frame = -1 
Query:   76 AERRLRVDQDDPTPPPGCPSRLVELLEEALRVEAR-----SNNMAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDDGTNGDATQKDGRNGGVFAGRRPAPS------SASGRSPXXXXXXXXXXLIADGAAAAVNRARSRAERGDGQGNGLGRERWEATLGRGVLPTWLGGVAEVEW 591
            A+R  R++ +DPTPPP CPSRLVELLEEALRVEA+     S  +                    XXXXXXXXXX         T G+                            SG             L+ DGAAAA +RARSRAERGDG+GNGLGRE WE +LG GVLP+WL G+A  +W
Sbjct:  600 AKRGGRINPEDPTPPPRCPSRLVELLEEALRVEAKRPASLSRRIPPAAAGGPAPAAKEGAPVAVXXXXXXXXXXSGYAAVGGSTAGNXXXXXXXXXXXXXXXXXXXXXXXXXXEKSGHD-SNWSPAVAVALLQDGAAAAEDRARSRAERGDGKGNGLGRELWEPSLGGGVLPSWLSGIA-ADW 780
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6756.15505.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KD78_9PHAE2.150e-1839.09Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G308_ECTSI1.140e-1643.17Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6756contigL-elsbetiae_contig6756:978..1601 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size625
Cds size486
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816748.2943792-CDS-L-elsbetiae_contig6756:977..14631622816748.2943792-CDS-L-elsbetiae_contig6756:977..1463Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6756 978..1463 +
1691683783.7299554-CDS-L-elsbetiae_contig6756:977..14631691683783.7299554-CDS-L-elsbetiae_contig6756:977..1463Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6756 978..1463 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816748.3080463-UTR-L-elsbetiae_contig6756:1463..16011622816748.3080463-UTR-L-elsbetiae_contig6756:1463..1601Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6756 1464..1601 +
1691683783.7394571-UTR-L-elsbetiae_contig6756:1463..16011691683783.7394571-UTR-L-elsbetiae_contig6756:1463..1601Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6756 1464..1601 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6756.15505.1prot_L-elsbetiae_contig6756.15505.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6756 978..1463 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6756.15505.1

>prot_L-elsbetiae_contig6756.15505.1 ID=prot_L-elsbetiae_contig6756.15505.1|Name=mRNA_L-elsbetiae_contig6756.15505.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=162bp
CLLRDETSRHGHRRGGRLRVCRPFLPLHLGHPTQPGWQDAPPQGRLPALA
AQAVALTVPPLRSRPCAVHGGGRPVRDESRHDRRGRAGGRPARGRRWGGT
PASKDTAVSAVLLRCIPVGAVVGVGGRGRGSGSGSGRSCGDGCVVAHYRR
RRRRSRRRHVV*
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mRNA from alignment at L-elsbetiae_contig6756:978..1601+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6756.15505.1 ID=mRNA_L-elsbetiae_contig6756.15505.1|Name=mRNA_L-elsbetiae_contig6756.15505.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=624bp|location=Sequence derived from alignment at L-elsbetiae_contig6756:978..1601+ (Laminarionema elsbetiae ELsaHSoW15)
TGCCTGCTGCGCGACGAGACTTCTAGGCATGGACATCGCCGCGGTGGCCG
CCTTCGAGTTTGTCGGCCCTTCCTCCCACTCCACCTCGGCCACCCCACCC
AGCCAGGTTGGCAGGACGCCCCTCCCCAGGGTCGCCTCCCAGCGCTCGCG
GCCCAGGCCGTTGCCTTGACCGTCCCCCCTCTCCGCTCTCGACCTTGCGC
GGTTCACGGCGGCGGCCGCCCCGTCCGCGATGAGAGCCGCCACGATCGCC
GGGGGCGGGCCGGGGGGCGACCTGCCAGAGGCCGACGATGGGGCGGGACG
CCGGCCAGCAAAGACACCGCCGTTTCGGCCGTCCTTCTGCGTTGCATCCC
CGTTGGTGCCGTCGTCGGAGTCGGCGGCAGGGGCAGGGGCAGCGGCAGCG
GCAGCGGTCGCAGCTGCGGCGATGGGTGCGTGGTGGCCCACTACCGGAGA
AGGCGGCGGCGAAGCCGCCGCCGCCATGTTGTTTGATCTGGCCTCCACGC
GCAAAGCCTCCTCAAGGAGTTCCACCAGCCTCGAGGGGCAGCCCGGCGGA
GGCGTCGGGTCATCCTGGTCTACGCGCAAACGCCGCTCGGCACTGCCGTC
TTCTCCGTCTTCCTTACTACAGTT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6756:978..1601+

>mRNA_L-elsbetiae_contig6756.15505.1 ID=mRNA_L-elsbetiae_contig6756.15505.1|Name=mRNA_L-elsbetiae_contig6756.15505.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=972bp|location=Sequence derived from alignment at L-elsbetiae_contig6756:978..1601+ (Laminarionema elsbetiae ELsaHSoW15)
TGCCTGCTGCGCGACGAGACTTCTAGGCATGGACATCGCCGCGGTGGCCG
CCTTCGAGTTTGTCGGCCCTTCCTCCCACTCCACCTCGGCCACCCCACCC
AGCCAGGTTGGCAGGACGCCCCTCCCCAGGGTCGCCTCCCAGCGCTCGCG
GCCCAGGCCGTTGCCTTGACCGTCCCCCCTCTCCGCTCTCGACCTTGCGC
GGTTCACGGCGGCGGCCGCCCCGTCCGCGATGAGAGCCGCCACGATCGCC
GGGGGCGGGCCGGGGGGCGACCTGCCAGAGGCCGACGATGGGGCGGGACG
CCGGCCAGCAAAGACACCGCCGTTTCGGCCGTCCTTCTGCGTTGCATCCC
CGTTGGTGCCGTCGTCGGAGTCGGCGGCAGGGGCAGGGGCAGCGGCAGCG
GCAGCGGTCGCAGCTGCGGCGATGGGTGCGTGGTGGCCCACTACCGGAGA
AGGCGGCGGCGAAGCCGCCGCCGCCATGTTGTTTGATGCCTGCTGCGCGA
CGAGACTTCTAGGCATGGACATCGCCGCGGTGGCCGCCTTCGAGTTTGTC
GGCCCTTCCTCCCACTCCACCTCGGCCACCCCACCCAGCCAGGTTGGCAG
GACGCCCCTCCCCAGGGTCGCCTCCCAGCGCTCGCGGCCCAGGCCGTTGC
CTTGACCGTCCCCCCTCTCCGCTCTCGACCTTGCGCGGTTCACGGCGGCG
GCCGCCCCGTCCGCGATGAGAGCCGCCACGATCGCCGGGGGCGGGCCGGG
GGGCGACCTGCCAGAGGCCGACGATGGGGCGGGACGCCGGCCAGCAAAGA
CACCGCCGTTTCGGCCGTCCTTCTGCGTTGCATCCCCGTTGGTGCCGTCG
TCGGAGTCGGCGGCAGGGGCAGGGGCAGCGGCAGCGGCAGCGGTCGCAGC
TGCGGCGATGGGTGCGTGGTGGCCCACTACCGGAGAAGGCGGCGGCGAAG
CCGCCGCCGCCATGTTGTTTGA
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