mRNA_L-elsbetiae_contig6753.15503.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6753.15503.1
Unique NamemRNA_L-elsbetiae_contig6753.15503.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig6753.15503.1 vs. uniprot
Match: D8LEZ6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEZ6_ECTSI)

HSP 1 Score: 243 bits (619), Expect = 2.050e-74
Identity = 113/129 (87.60%), Postives = 123/129 (95.35%), Query Frame = 1
Query:    7 DRVDYKTLLDANNLRNTCQHGRPGKWAAIVIQDEYNESPYEAYEYIYAPYTVDRPELDGLYKKYGGLERDVIMIPFRGIDRLKLMHSILVAKRADMGCNLDMLRLVKSKCLLAFFPLHDKIELRALQRK 393
            DRV YK LLDANNLR+TCQHGRPGKWA+IVIQDEYNESPYEAYEYIYAPYTVDRPEL+ LYKK+GGLER+V+MIPFRG DRLKL++SILVAK AD GCNLD+LRLVKSKCLLAFFPLHDK+ELRALQRK
Sbjct:   62 DRVGYKILLDANNLRSTCQHGRPGKWASIVIQDEYNESPYEAYEYIYAPYTVDRPELESLYKKHGGLEREVMMIPFRGTDRLKLLYSILVAKTADSGCNLDILRLVKSKCLLAFFPLHDKVELRALQRK 190          
BLAST of mRNA_L-elsbetiae_contig6753.15503.1 vs. uniprot
Match: A0A835ZD27_9STRA (Calcium-activated chloride channel-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZD27_9STRA)

HSP 1 Score: 167 bits (422), Expect = 7.090e-46
Identity = 74/129 (57.36%), Postives = 102/129 (79.07%), Query Frame = 1
Query:   10 RVDYKTLLDANNLRNTCQHGRPGKWAAIVIQDEYNESPYEAYEYIYAPYTVDRPELDGLYKKYGGLER--DVIMIPFRGIDRLKLMHSILVAKRADMGCNLDMLRLVKSKCLLAFFPLHDKIELRALQR 390
            R+ YK LLD++ LR+TCQHGRPG+W+ +VIQDE+N+  YE YE+++APY  DRP+++ LYK+YG          I FRG+DRLKLM++I+VAK ++ GCNLD+++L+K K +L FFPLHDK+ELR LQR
Sbjct:   64 RIGYKLLLDSSVLRSTCQHGRPGRWSGLVIQDEHNQCRYEPYEHLHAPYLSDRPDMESLYKRYGDAAGAGSAPKIVFRGVDRLKLMYTIMVAKSSEGGCNLDIVKLLKYKAILGFFPLHDKVELRLLQR 192          
BLAST of mRNA_L-elsbetiae_contig6753.15503.1 vs. uniprot
Match: A0A7S3GXB2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GXB2_9STRA)

HSP 1 Score: 94.0 bits (232), Expect = 3.050e-20
Identity = 51/134 (38.06%), Postives = 78/134 (58.21%), Query Frame = 1
Query:    7 DRVDYKTLLDANNLRNTCQHGR-----PGKWAAIVIQDEYNESPYEAYEYIYAPYTVDRPELDGLYKKYGGLERDVIMIPFRGIDRLKLMHSILVAKRADMGCNLDMLRLVKSKCLLAFFPLHDKIELRALQRK 393
            DR++Y+  L+   L N  + G        +W ++ +     E+  + YEYI+  Y   R   D +Y+KYG  E  +     RG+DRLKL+ +I+ A+ +D G  LD+ RL+KSKC++ FFPLHD +ELR L+ K
Sbjct:   30 DRINYRLRLEPAGLANKLREGHLKGPIEKQWKSVEVPSTSIETDIDPYEYIHCDY---RQGEDPMYQKYGVSESVL-----RGVDRLKLIANIIAARLSDGGAFLDVHRLIKSKCMITFFPLHDAVELRDLEEK 155          
BLAST of mRNA_L-elsbetiae_contig6753.15503.1 vs. uniprot
Match: A0A6A4DF59_9STRA (Anoct_dimer domain-containing protein n=3 Tax=Phytophthora TaxID=4783 RepID=A0A6A4DF59_9STRA)

HSP 1 Score: 94.7 bits (234), Expect = 4.990e-20
Identity = 53/128 (41.41%), Postives = 78/128 (60.94%), Query Frame = 1
Query:    7 DRVDYKTLLDANNLRNTCQHG-RPGKWAAIVIQDEYNESPYEAYEYIYAPYTVDRPELDGLYKKYGGLERDVIMIPFRGIDRLKLMHSILVAKRADMGCNLDMLRLVKSKCLLAFFPLHDKIELRALQ 387
            DR+DYK   DA+ LR   + G        I+I+DE+  S  + Y+ I+A + V+ P L   Y+KYG        IPFRG+DR+KL+ +I V  R + GC L++  L++ KCL+A FPLHD++EL  L+
Sbjct:  113 DRIDYKVEFDASELRKIAETGYETHSIKKIIIKDEHQVSHRDPYQNIFAKFDVE-PRLYPAYRKYGDKP-----IPFRGVDRIKLLLNI-VKTRGEGGCGLNVSELLRDKCLVAAFPLHDRMELDKLR 233          
BLAST of mRNA_L-elsbetiae_contig6753.15503.1 vs. uniprot
Match: A0A8K1CBT3_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CBT3_PYTOL)

HSP 1 Score: 94.4 bits (233), Expect = 6.820e-20
Identity = 51/129 (39.53%), Postives = 77/129 (59.69%), Query Frame = 1
Query:    7 DRVDYKTLLDANNLRNTCQHGRPGK-WAAIVIQDEYNESPYEAYEYIYAPYTVDRPELDGLYKKYGGLERDVIMIPFRGIDRLKLMHSILVAKRADMGCNLDMLRLVKSKCLLAFFPLHDKIELRALQR 390
            DR+DYK   D   +R   + G P +  A I IQD+   S  + Y+ ++A Y ++ P L   YKK+G  +     IPFRG+DR+KLM +I+ A   D GC L++  L+K++C++  FPLH+  EL  L+R
Sbjct:  115 DRIDYKVEFDPVEIRKIAEQGYPEQNIAPIRIQDDLQVSNRDPYQNLFAKYDIE-PRLQPAYKKFGHKK-----IPFRGVDRIKLMLNIIKAHLTDGGCGLNLELLMKTECIVGAFPLHEPEELALLKR 237          
BLAST of mRNA_L-elsbetiae_contig6753.15503.1 vs. uniprot
Match: A0A485LK58_9STRA (Aste57867_22123 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LK58_9STRA)

HSP 1 Score: 93.6 bits (231), Expect = 1.260e-19
Identity = 53/130 (40.77%), Postives = 79/130 (60.77%), Query Frame = 1
Query:    7 DRVDYKTLLDANNLRNTCQHGRPGKWAA-IVIQDEYNESPYEAYEYIYAPYTVDRPELDGLYKKYGGLERDVIMIPFRGIDRLKLMHSILVAKRADMGCNLDMLRLVKSKCLLAFFPLHDKIELRALQRK 393
            DR+D K   DA+ L+ T + G P +  A I I D+   +  +AY+ I+A Y ++ P L  LYKKYG  +     IPFRG+DR+KL+ SI+ A  +D GC+L+   L+  KCL+A + LH + E  A+ +K
Sbjct:   95 DRIDLKLEFDADELKRTAEAGYPDRGIAPIRISDDPKLTHRKAYDNIFAKYDME-PRLQPLYKKYGHKK-----IPFRGVDRIKLILSIIGASASDGGCHLNTTTLIMKKCLVAAYALHSEEEQVAVTKK 218          
BLAST of mRNA_L-elsbetiae_contig6753.15503.1 vs. uniprot
Match: H3H2A8_PHYRM (Anoct_dimer domain-containing protein n=11 Tax=Phytophthora TaxID=4783 RepID=H3H2A8_PHYRM)

HSP 1 Score: 92.8 bits (229), Expect = 2.350e-19
Identity = 55/130 (42.31%), Postives = 75/130 (57.69%), Query Frame = 1
Query:    7 DRVDYKTLLDANNLRNTCQHG-RPGKWAAIVIQDEYNESPYEAYEYIYAPYTVDRPELDGLYKKYGGLERDVIMIPFRGIDRLKLMHSILVAKRADMGCNLDMLRLVKSKCLLAFFPLHDKIELRALQRK 393
            DR+DYK   D   LR   + G        I I+DE+  S  + +E I+A + V+ P L   Y+KYG  +     IPFRG+DR+KLM +I V  R + GC L++  L+K KCL+A FPLHD  EL  L+ K
Sbjct:  114 DRIDYKVEFDPTELRKIAETGYEEENIKKINIKDEHQVSHRDPFENIFAKFDVE-PRLYPAYRKYGHKQ-----IPFRGVDRIKLMLNI-VKTRGEGGCGLNLSELLKDKCLVATFPLHDPEELSKLREK 236          
BLAST of mRNA_L-elsbetiae_contig6753.15503.1 vs. uniprot
Match: A0A225V8M5_9STRA (Anoct_dimer domain-containing protein (Fragment) n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225V8M5_9STRA)

HSP 1 Score: 92.8 bits (229), Expect = 2.380e-19
Identity = 51/130 (39.23%), Postives = 79/130 (60.77%), Query Frame = 1
Query:    7 DRVDYKTLLDANNLRNTCQHG-RPGKWAAIVIQDEYNESPYEAYEYIYAPYTVDRPELDGLYKKYGGLERDVIMIPFRGIDRLKLMHSILVAKRADMGCNLDMLRLVKSKCLLAFFPLHDKIELRALQRK 393
            DR+DYK   D   LR   + G        IVI+DE++ S  + ++ I+A + V+ P L   Y+KYG  +     IPFRG+DR+KLM +I +  + + GC L++  L++ KCL+A FPLH+  EL+ L++K
Sbjct:  114 DRIDYKVEFDPTELRTIAETGYEEQNIKKIVIKDEHHVSKRDPFQNIFAKFDVE-PRLSKAYRKYGHKQ-----IPFRGVDRIKLMLNI-IKTQGEGGCGLNLSELLQDKCLVAAFPLHEADELKKLKQK 236          
BLAST of mRNA_L-elsbetiae_contig6753.15503.1 vs. uniprot
Match: A0A3F2RRK4_9STRA (Anoct_dimer domain-containing protein n=1 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RRK4_9STRA)

HSP 1 Score: 91.7 bits (226), Expect = 5.970e-19
Identity = 52/130 (40.00%), Postives = 75/130 (57.69%), Query Frame = 1
Query:    7 DRVDYKTLLDANNLRNTCQHGRPGK-WAAIVIQDEYNESPYEAYEYIYAPYTVDRPELDGLYKKYGGLERDVIMIPFRGIDRLKLMHSILVAKRADMGCNLDMLRLVKSKCLLAFFPLHDKIELRALQRK 393
            DRVDYK   D   LR   + G   +    I I+D+Y  +P + ++ I+A + V+ P L   Y+KYG  +      PFRG+DR+KL+ SI +    + GC L+M  L+K  CL+A FPLHD+ EL  L+ K
Sbjct:  113 DRVDYKVEFDPAELRKIAETGYEDQNIKKIFIKDDYKITPRDPFQNIFAKFDVE-PRLQPAYRKYGHKQT-----PFRGVDRIKLLLSI-IRTHGEGGCGLNMSELLKDNCLVAAFPLHDREELNKLKDK 235          
BLAST of mRNA_L-elsbetiae_contig6753.15503.1 vs. uniprot
Match: A0A2D4C7W1_PYTIN (Anoct_dimer domain-containing protein (Fragment) n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C7W1_PYTIN)

HSP 1 Score: 91.3 bits (225), Expect = 8.120e-19
Identity = 53/130 (40.77%), Postives = 76/130 (58.46%), Query Frame = 1
Query:    7 DRVDYKTLLDANNLRNTCQHGRPGK-WAAIVIQDEYNESPYEAYEYIYAPYTVDRPELDGLYKKYGGLERDVIMIPFRGIDRLKLMHSILVAKRADMGCNLDMLRLVKSKCLLAFFPLHDKIELRALQRK 393
            DR+DYK   D    R   + G P +  A I I DE   S  + Y+ ++A Y ++ P L   YKK+G  +     IPFRG+DR+KL+ +I+ +   D GC L++  L K+KCL+A FPLH+  EL AL+ K
Sbjct:  116 DRIDYKVEFDPVETRRIAEQGYPEQNIAPIQIHDEKGISSRDPYQNLFAKYDME-PRLQPAYKKFGHKK-----IPFRGVDRIKLILNIIKSHLTDGGCALNLEILEKNKCLVASFPLHEYEELSALKPK 239          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6753.15503.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LEZ6_ECTSI2.050e-7487.60Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835ZD27_9STRA7.090e-4657.36Calcium-activated chloride channel-domain-containi... [more]
A0A7S3GXB2_9STRA3.050e-2038.06Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A6A4DF59_9STRA4.990e-2041.41Anoct_dimer domain-containing protein n=3 Tax=Phyt... [more]
A0A8K1CBT3_PYTOL6.820e-2039.53Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A485LK58_9STRA1.260e-1940.77Aste57867_22123 protein n=1 Tax=Aphanomyces stella... [more]
H3H2A8_PHYRM2.350e-1942.31Anoct_dimer domain-containing protein n=11 Tax=Phy... [more]
A0A225V8M5_9STRA2.380e-1939.23Anoct_dimer domain-containing protein (Fragment) n... [more]
A0A3F2RRK4_9STRA5.970e-1940.00Anoct_dimer domain-containing protein n=1 Tax=Phyt... [more]
A0A2D4C7W1_PYTIN8.120e-1940.77Anoct_dimer domain-containing protein (Fragment) n... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6753contigL-elsbetiae_contig6753:8121..9165 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score240.7
Seed ortholog evalue3.8e-61
Seed eggNOG ortholog2880.D8LEZ6
KEGG koko:K19327,ko:K19480,ko:K19497,ko:K19501
KEGG TC1.A.17.1,1.A.17.1.2,1.A.17.1.21,1.A.17.1.3
KEGG Pathwayko04740,map04740
Hectar predicted targeting categoryother localisation
EggNOG free text desc.intracellular chloride channel activity
EggNOG OGsKOG2514@1,KOG2514@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04040
Exons2
Model size396
Cds size396
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816748.1111355-CDS-L-elsbetiae_contig6753:8120..82731622816748.1111355-CDS-L-elsbetiae_contig6753:8120..8273Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6753 8121..8273 +
1691683783.5985494-CDS-L-elsbetiae_contig6753:8120..82731691683783.5985494-CDS-L-elsbetiae_contig6753:8120..8273Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6753 8121..8273 +
1622816748.1223764-CDS-L-elsbetiae_contig6753:8922..91651622816748.1223764-CDS-L-elsbetiae_contig6753:8922..9165Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6753 8923..9165 +
1691683783.615781-CDS-L-elsbetiae_contig6753:8922..91651691683783.615781-CDS-L-elsbetiae_contig6753:8922..9165Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6753 8923..9165 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6753.15503.1prot_L-elsbetiae_contig6753.15503.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6753 8121..9165 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6753.15503.1

>prot_L-elsbetiae_contig6753.15503.1 ID=prot_L-elsbetiae_contig6753.15503.1|Name=mRNA_L-elsbetiae_contig6753.15503.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=132bp
MQDRVDYKTLLDANNLRNTCQHGRPGKWAAIVIQDEYNESPYEAYEYIYA
PYTVDRPELDGLYKKYGGLERDVIMIPFRGIDRLKLMHSILVAKRADMGC
NLDMLRLVKSKCLLAFFPLHDKIELRALQRK*
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mRNA from alignment at L-elsbetiae_contig6753:8121..9165+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6753.15503.1 ID=mRNA_L-elsbetiae_contig6753.15503.1|Name=mRNA_L-elsbetiae_contig6753.15503.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1045bp|location=Sequence derived from alignment at L-elsbetiae_contig6753:8121..9165+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCAGGATCGCGTCGACTACAAGACTCTGCTGGACGCAAACAATCTGCG AAATACGTGCCAACATGGACGACCGGGAAAATGGGCGGCCATAGTTATTC AGGACGAGTACAATGAGTCTCCATACGAGGCCTACGAATACATCTACGCG CCGGTGTGTTCGTCTTGCATATTATGTGTGTTTTTCAGTTTATCCGTGCG TGTTTGGGAGCATATTTGGATATCTATTAGCTACGGGTAGAAATCGAGGG GATCGCGCGTGTTATCTGCGATTAAATCTGAGACGTTCAGTACTGCTCGC TCGCCACCGCATGTCGATCGGTCTGAAGCGCATCAGCACGAGCTAGTGCA AGAACCTTCCTCCTAAATATGCTCATTCCTTTTTTTCAACCCTCGCTATT TTTGTTTGAAACAAGTTCCAGTTTTCTTCACAAGCCGCCAATACAACGGG TTCCGTGGCGGTATCAAGTACAATCTCGTCCGTAGTGGCGGCATTGTGCC GATTTTTCATTTTTTGCCTGGAATGCGCTGCCGTTTGGCTTACAGCTGCT AGAAGTCGCGATGGAAAAAGGGTCCTCTCGCTTTTGAAGTCGCGATCGAT TTTCCGTGCTGCTATTTCTCAGTTCCAGCGCCTTTGGTTGCCCGCAATTT ATTCTGTTGAAGCTAGTCGAATCCCGCTCGAAATGACTTGGAAACCCATT GACGTCCGCGATGCTTTTCTCGCCTGCAGTCGTATTCCTCGCCACATTGC GCTCATCCCACACGCCGCGTGCGCGCGCCTGCCCTTGGTCGATCGGCCGC AGTACACCGTTGACAGGCCAGAGCTTGACGGCCTATACAAAAAGTACGGG GGCCTCGAACGCGACGTGATAATGATCCCCTTCCGCGGAATCGACCGCCT GAAGCTGATGCATAGCATCCTCGTCGCAAAGAGGGCCGACATGGGGTGCA ACCTCGACATGCTGCGGCTGGTCAAGTCCAAATGCCTCTTGGCCTTCTTC CCCCTTCATGATAAGATCGAGCTGCGGGCCCTGCAGCGCAAGTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6753:8121..9165+

>mRNA_L-elsbetiae_contig6753.15503.1 ID=mRNA_L-elsbetiae_contig6753.15503.1|Name=mRNA_L-elsbetiae_contig6753.15503.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=792bp|location=Sequence derived from alignment at L-elsbetiae_contig6753:8121..9165+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCAGGATCGCGTCGACTACAAGACTCTGCTGGACGCAAACAATCTGCG
AAATACGTGCCAACATGGACGACCGGGAAAATGGGCGGCCATAGTTATTC
AGGACGAGTACAATGAGTCTCCATACGAGGCCTACGAATACATCTACGCG
CCGATGCAGGATCGCGTCGACTACAAGACTCTGCTGGACGCAAACAATCT
GCGAAATACGTGCCAACATGGACGACCGGGAAAATGGGCGGCCATAGTTA
TTCAGGACGAGTACAATGAGTCTCCATACGAGGCCTACGAATACATCTAC
GCGCCGTACACCGTTGACAGGCCAGAGCTTGACGGCCTATACAAAAAGTA
CGGGGGCCTCGAACGCGACGTGATAATGATCCCCTTCCGCGGAATCGACC
GCCTGAAGCTGATGCATAGCATCCTCGTCGCAAAGAGGGCCGACATGGGG
TGCAACCTCGACATGCTGCGGCTGGTCAAGTCCAAATGCCTCTTGGCCTT
CTTCCCCCTTCATGATAAGATCGAGCTGCGGGCCCTGCAGCGCAAGTGAT
ACACCGTTGACAGGCCAGAGCTTGACGGCCTATACAAAAAGTACGGGGGC
CTCGAACGCGACGTGATAATGATCCCCTTCCGCGGAATCGACCGCCTGAA
GCTGATGCATAGCATCCTCGTCGCAAAGAGGGCCGACATGGGGTGCAACC
TCGACATGCTGCGGCTGGTCAAGTCCAAATGCCTCTTGGCCTTCTTCCCC
CTTCATGATAAGATCGAGCTGCGGGCCCTGCAGCGCAAGTGA
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