mRNA_L-elsbetiae_contig675.15498.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig675.15498.1
Unique NamemRNA_L-elsbetiae_contig675.15498.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig675.15498.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig675contigL-elsbetiae_contig675:16400..17144 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size745
Cds size375
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig675.15498.1prot_L-elsbetiae_contig675.15498.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig675 16589..16963 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816747.3853366-UTR-L-elsbetiae_contig675:16399..165881622816747.3853366-UTR-L-elsbetiae_contig675:16399..16588Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig675 16400..16588 +
1691683783.0977175-UTR-L-elsbetiae_contig675:16399..165881691683783.0977175-UTR-L-elsbetiae_contig675:16399..16588Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig675 16400..16588 +
1622816747.4220834-UTR-L-elsbetiae_contig675:16963..171441622816747.4220834-UTR-L-elsbetiae_contig675:16963..17144Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig675 16964..17144 +
1691683783.118144-UTR-L-elsbetiae_contig675:16963..171441691683783.118144-UTR-L-elsbetiae_contig675:16963..17144Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig675 16964..17144 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816747.4108949-CDS-L-elsbetiae_contig675:16588..169631622816747.4108949-CDS-L-elsbetiae_contig675:16588..16963Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig675 16589..16963 +
1691683783.108604-CDS-L-elsbetiae_contig675:16588..169631691683783.108604-CDS-L-elsbetiae_contig675:16588..16963Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig675 16589..16963 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig675.15498.1

>prot_L-elsbetiae_contig675.15498.1 ID=prot_L-elsbetiae_contig675.15498.1|Name=mRNA_L-elsbetiae_contig675.15498.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=125bp
MKLNRVCFLSKDHTWRHAMAEQLPMVSEPDTGRESETSYCDTSHLSSAQP
CCCGRLFKCRACEQAVADELIGLTFDKRVPLLFNPQKGQGGRNCRTLNIH
VAPLKEPRDRAFGYHCLIGSKPRR*
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mRNA from alignment at L-elsbetiae_contig675:16400..17144+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig675.15498.1 ID=mRNA_L-elsbetiae_contig675.15498.1|Name=mRNA_L-elsbetiae_contig675.15498.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=745bp|location=Sequence derived from alignment at L-elsbetiae_contig675:16400..17144+ (Laminarionema elsbetiae ELsaHSoW15)
TGGATTAGGAAACCATCACCGCGCGGCGTTAAACTTAAATCAATCCCACT
GGCAACCATTGGAGCGAAAGTCCTGTCCGAGGTCTGCTGAACTTGTGAGC
AGGAGGGCGCACAAGGCAGGCCTAGCTTGCACGTCGTACGTTTTTAGTCT
CGACAGGGATTGGGTGCCGCCTCTCGTTATTTCACTACGATGAAGCTGAA
CAGGGTTTGTTTTCTGTCGAAGGACCACACGTGGAGACATGCAATGGCTG
AGCAACTGCCAATGGTGAGTGAGCCAGATACTGGGCGAGAGAGTGAGACC
TCTTACTGCGACACATCTCATCTCAGCAGTGCACAGCCTTGCTGTTGCGG
TAGATTGTTTAAATGCAGAGCTTGTGAGCAAGCCGTGGCAGATGAGTTGA
TAGGTCTAACATTTGATAAACGCGTTCCTCTACTCTTCAATCCGCAAAAG
GGCCAAGGGGGCAGAAACTGTCGAACATTGAATATACATGTGGCCCCGCT
CAAAGAGCCACGAGACAGGGCATTTGGATATCATTGCTTGATTGGGAGCA
AACCCAGACGTTGATGGGTGGTCGTTGAGGAGAATAGGGTCCACTCTTGT
ACGCTCAGGGCAAAAGTTTGAAGTGTTTCGAAGCACCATATGTTTCCAGC
ACATAAAAATATGGGTAGAAAGGCGCTCACTGACGTGGCAAGTTCCTGCG
CGCATACTTACTTTTGACTTGCTTCAGCCCTTTGCACGGCTTTCG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig675:16400..17144+

>mRNA_L-elsbetiae_contig675.15498.1 ID=mRNA_L-elsbetiae_contig675.15498.1|Name=mRNA_L-elsbetiae_contig675.15498.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=750bp|location=Sequence derived from alignment at L-elsbetiae_contig675:16400..17144+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAAGCTGAACAGGGTTTGTTTTCTGTCGAAGGACCACACGTGGAGACA
TGCAATGGCTGAGCAACTGCCAATGGTGAGTGAGCCAGATACTGGGCGAG
AGAGTGAGACCTCTTACTGCGACACATCTCATCTCAGCAGTGCACAGCCT
TGCTGTTGCGGTAGATTGTTTAAATGCAGAGCTTGTGAGCAAGCCGTGGC
AGATGAGTTGATAGGTCTAACATTTGATAAACGCGTTCCTCTACTCTTCA
ATCCGCAAAAGGGCCAAGGGGGCAGAAACTGTCGAACATTGAATATACAT
GTGGCCCCGCTCAAAGAGCCACGAGACAGGGCATTTGGATATCATTGCTT
GATTGGGAGCAAACCCAGACGTTGAATGAAGCTGAACAGGGTTTGTTTTC
TGTCGAAGGACCACACGTGGAGACATGCAATGGCTGAGCAACTGCCAATG
GTGAGTGAGCCAGATACTGGGCGAGAGAGTGAGACCTCTTACTGCGACAC
ATCTCATCTCAGCAGTGCACAGCCTTGCTGTTGCGGTAGATTGTTTAAAT
GCAGAGCTTGTGAGCAAGCCGTGGCAGATGAGTTGATAGGTCTAACATTT
GATAAACGCGTTCCTCTACTCTTCAATCCGCAAAAGGGCCAAGGGGGCAG
AAACTGTCGAACATTGAATATACATGTGGCCCCGCTCAAAGAGCCACGAG
ACAGGGCATTTGGATATCATTGCTTGATTGGGAGCAAACCCAGACGTTGA
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