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Homology
BLAST of mRNA_L-elsbetiae_contig6718.15459.1 vs. uniprot
Match: D7FN08_ECTSI (Kinase, NEK n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN08_ECTSI) HSP 1 Score: 149 bits (376), Expect = 2.880e-38 Identity = 85/169 (50.30%), Postives = 105/169 (62.13%), Query Frame = 3
Query: 3 LHRDFEMRTQLTNRDKEGMNVVMLAAKSSNMSVLGALLTEVAQTKALSALDMRDHKQMTLLMHAVCNGPSPIFQEAHRAIRKAYGGDAIEVGRHLMLKSADDKTILMHAAASGDPMVLKMVSDACQKTIRPQTLREMVVERDSDGLNLLMHAASCSAPPSALASPDSVP 509
L R+ EMRTQLTNRD+EGM +MLAA+SS+++VLG LLTE+ T+AL+ L++ DHK MTLLMHA NGP+PIFQEA +A+RKA+GGD + LREM+VERDSDGLNLLMHAASC AP SAL ++ P
Sbjct: 134 LARESEMRTQLTNRDREGMTALMLAARSSSVAVLGELLTEIYNTEALATLELHDHKHMTLLMHAASNGPAPIFQEAQQAMRKAFGGD--------------------------------------------EDLREMMVERDSDGLNLLMHAASCCAPASALVPAETPP 258
BLAST of mRNA_L-elsbetiae_contig6718.15459.1 vs. uniprot
Match: D7FST7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FST7_ECTSI) HSP 1 Score: 100 bits (248), Expect = 7.300e-21 Identity = 60/150 (40.00%), Postives = 86/150 (57.33%), Query Frame = 3
Query: 24 RTQLTNRDKEGMNVVMLAAKSSNMSVLGALLTEVAQTKALSALDMRDHKQMTLLMHAVCNGPSPIFQEAHRAIRKAYGGDAIEVGRHLMLKSADDKTILMHAAASGDPMVLKMVSDACQKTIRPQTLREMVVERDSDGLNLLMHAASCSA 473
R QL D+ GM ++MLAA+S ++ +L A++ V +A L RDH T+LMHA S +F +++ Y + E L+ SADD+TILMHAA GD M VS ACQ+ I P LR+++ + D +G+ LMHA S +A
Sbjct: 108 RKQLEYVDESGMTLLMLAARSGSVGILEAVVERVRIVEAPERLLDRDHSATTVLMHAAGARRSAVFTVILDELQRCYKDNVEE---QLLASSADDRTILMHAARCGDQMGALSVSHACQRFIMPSRLRKLIKQVDGEGVTFLMHAISATA 254
BLAST of mRNA_L-elsbetiae_contig6718.15459.1 vs. uniprot
Match: A0A6H5JBB0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBB0_9PHAE) HSP 1 Score: 78.6 bits (192), Expect = 3.540e-13 Identity = 52/145 (35.86%), Postives = 74/145 (51.03%), Query Frame = 3
Query: 30 QLTNRDKEGMNVVMLAAKSSNMSVLGALLTEVAQTKALSALDMRDHKQMTLLMHAVCNGPSPIFQEAHRAIRKAYGGDAIEVGRHLMLKSADDKTILMHAAASGDPMVLKMVSDACQKTIRPQTLREMVVERDSDGLNLLMHAAS 464
QL D+ GM ++MLAA+S N+ +L A++ V A S +F +++ Y + E L+ SADD+TILMHAA GD M + VS ACQ+ I P LR++V + DS+G+ LMHA S
Sbjct: 153 QLEYMDESGMTLLMLAARSGNVGILEAVVERVRI--APEXXXXXXXXXXXXXXXXXXXXXSAVFTVILNELQRCYKDNVEE---QLLASSADDRTILMHAARCGDQMGVLSVSHACQRFIMPSRLRKLVKQVDSEGVTFLMHAIS 292
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 5 |
| Model size | 686 |
| Cds size | 666 |
| Stop | 0 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622816743.971183-CDS-L-elsbetiae_contig6718:4267..4443 | 1622816743.971183-CDS-L-elsbetiae_contig6718:4267..4443 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig6718 4268..4443 - |
| 1691683780.9015505-CDS-L-elsbetiae_contig6718:4267..4443 | 1691683780.9015505-CDS-L-elsbetiae_contig6718:4267..4443 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig6718 4268..4443 - |
| 1622816743.9892204-CDS-L-elsbetiae_contig6718:4943..5052 | 1622816743.9892204-CDS-L-elsbetiae_contig6718:4943..5052 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig6718 4944..5052 - |
| 1691683780.911389-CDS-L-elsbetiae_contig6718:4943..5052 | 1691683780.911389-CDS-L-elsbetiae_contig6718:4943..5052 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig6718 4944..5052 - |
| 1622816744.0001853-CDS-L-elsbetiae_contig6718:6351..6483 | 1622816744.0001853-CDS-L-elsbetiae_contig6718:6351..6483 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig6718 6352..6483 - |
| 1691683780.9254882-CDS-L-elsbetiae_contig6718:6351..6483 | 1691683780.9254882-CDS-L-elsbetiae_contig6718:6351..6483 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig6718 6352..6483 - |
| 1622816744.0106797-CDS-L-elsbetiae_contig6718:6809..6941 | 1622816744.0106797-CDS-L-elsbetiae_contig6718:6809..6941 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig6718 6810..6941 - |
| 1691683780.938658-CDS-L-elsbetiae_contig6718:6809..6941 | 1691683780.938658-CDS-L-elsbetiae_contig6718:6809..6941 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig6718 6810..6941 - |
| 1622816744.0257177-CDS-L-elsbetiae_contig6718:7464..7581 | 1622816744.0257177-CDS-L-elsbetiae_contig6718:7464..7581 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig6718 7465..7581 - |
| 1691683780.9501803-CDS-L-elsbetiae_contig6718:7464..7581 | 1691683780.9501803-CDS-L-elsbetiae_contig6718:7464..7581 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig6718 7465..7581 - |
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622816744.035343-UTR-L-elsbetiae_contig6718:7581..7601 | 1622816744.035343-UTR-L-elsbetiae_contig6718:7581..7601 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig6718 7582..7601 - |
| 1691683780.9609635-UTR-L-elsbetiae_contig6718:7581..7601 | 1691683780.9609635-UTR-L-elsbetiae_contig6718:7581..7601 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig6718 7582..7601 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig6718.15459.1 >prot_L-elsbetiae_contig6718.15459.1 ID=prot_L-elsbetiae_contig6718.15459.1|Name=mRNA_L-elsbetiae_contig6718.15459.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=222bp
MRTQLTNRDKEGMNVVMLAAKSSNMSVLGALLTEVAQTKALSALDMRDHK
QMTLLMHAVCNGPSPIFQEAHRAIRKAYGGDAIEVGRHLMLKSADDKTIL
MHAAASGDPMVLKMVSDACQKTIRPQTLREMVVERDSDGLNLLMHAASCS
APPSALASPDSVPASAAGPATGDKDAGGSDGAIVSSSGSGGPAPLGAEPP
HVGLPKPPPAASSAATPSTIAA back to topmRNA from alignment at L-elsbetiae_contig6718:4268..7601- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_L-elsbetiae_contig6718.15459.1 ID=mRNA_L-elsbetiae_contig6718.15459.1|Name=mRNA_L-elsbetiae_contig6718.15459.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3334bp|location=Sequence derived from alignment at L-elsbetiae_contig6718:4268..7601- (Laminarionema elsbetiae ELsaHSoW15)
AGCTCCACAGGGATTTTGAGATGAGGACTCAGCTGACCAACCGCGACAAA
GAGGGTATGAACGTTGTCATGCTGGCGGCGAAAAGCTCAAACATGTCCGT
GCTTGGAGCCCTGCTGACGGAGGTTGCCCAAACTAAGGTTTGAGCGGCAT
GTAGCGCAGCGCAGCACACTTCCCCTAGCGAGTTTTAAACAACACCTATC
GCCGATTGTGCCAAAACCCGATTGTTGCGATTCACGTTGTTTCGAAATCT
GAAAAAAAAAACGATAGTAGAGGCGATGCTTTGTACCTCAAATACCCATG
AAACACAACAGGGCATGGGCCAACAGCCTGCCATATCAGAGACATAGCAC
TATGCTAACAGGCTGGGACCCGTCTTCTCTTTGGGGGGTCGCGCCGGCTC
AAACAAGGAGCAGAGCCCTCCGAGACTGCGGACAACACTTCGTGGGTTGA
TTTAGCGATTGCGACAATACTACATAAATCTGGTCGGGCACTGCTGCCCT
TGATGGTTCCACCACCCGCGTTGTACGTATGTAGCAGGGTTGCAGGGCAA
GGACCCGCTTCCTCCCCTGAAGCTCTCTCTCTCCCTCTCTCCCTCTCTCC
CTCTTTCCCTCTCCCTCTCTTTGCCTGTGCTTCGTCCATTCTTTGTCCTT
CCCTCCACAGGCCCTGAGCGCCCTGGACATGCGCGATCACAAGCAGATGA
CGCTGCTGATGCATGCTGTTTGCAACGGACCGTCGCCGATATTCCAGGAA
GCCCACAGGGCCATACGCAAGGCCTATGGAGGCGACGCTATCGTGAGTCT
TGGATCGCGCTCTCTGTAGACAGCAGCGGATTAATTGATAACTTGAACCG
TGCGCTGTGTGGCATCGCGAGCGTGTTAAGTGTGTGGACAAACTGCGGTC
TGAGAACCGGTGCGCCTATTTTAGCTATCACCTCCAACCCCGCTAAGTGA
TCCCTACTCGCCGTAAAACGAGGCCGGTACTCGGATAGAGAGGATGCTCC
GACGAATAAGAACACGCGCCAGAAGAACTCTGTTGCCGCCATTTTTATTG
TGCCAAGGGCGCCGGACACATCGCTCCAACTTTCCGCCCCCGTTGGGCGC
AACACACCCCTTGGTCAGGAGGTTGGCCGACACCTGATGCTCAAGTCCGC
TGACGACAAGACGATCCTGATGCACGCGGCGGCCTCGGGCGACCCCATGG
TCCTCAAGATGGTGTCCGACGCGTGCCAGAAAACCATCCGGCCGCAGACG
GTATGTGCATTGTCGGCGGCGACTGTCTCTTTAGTCCTTCAGAATAGGCA
CGCAAATAGCACGAAGACCGGGACCAGGAGTGCTCGCACGTGTCACGACG
TGCAGCACGGGTTGTTTTTATTTTTCCCTCGCTATATATCCTCTCCGCGA
CCAATTTTGGCAACACGGCAAACAGAAGAGCCAGGGGAAGAGAGTGCGGT
TTTCAGCCCTCTTCCCACCTACCCACCGACGCCGCCATGGAGGATACCAA
TGAGCAATAACTGAATGTTTTCAATGAACTGGCCTATGTTTTCGAGCAAC
CCACGCGTTCTAGATTTAAGCGAGATACGACTCCTCCTTTGCGTCGGTGC
TTCATTTTGATATACCATCCATAAGTGTTGCCCAACGTAAAAGAAGAGAC
GCTCACCGCCGACACGTTCGCTTTCACGACGGGCTTCACCAACAGCGCCG
CGGGAGGTGATGCCGCCCTTTTACCCCAAACTTTGCGAGAAGGAAGAACT
AGCTGACGCGAAGATGCTGCCTGTTCGTCTACCTCGTTCGGAGAGCAGGT
GCCGCGTGCGCTCCTCGCGCAAGCAGCGCAAGCGGGGCCTCGGCCGCTCC
GACACTTTTTGCGAGGGGCACCGTCCCTCAAGTTGTTTTTTGTACCCACC
ATAACAATACTTCGACTTCATTGTTGACGAGGGTGGGGAGTGCTGAACCC
TGAACCCTGCTCGCGATAAAAACAAAGTAACAGGCAGGCACCGCAGGAGC
CCCCCCCCCCCCCTGTGCGATCCCGGTTGAGTCGTCTAGCTAGTCGTAGT
GGAGGATGGGGGCCAGTGGGGCAGACGATGAATAAGCCAATAATGGGAGA
AACAAATAACAATAAAAAAACGAGGGCGAACACACCTACCGGTCGAGAGA
GCCAACTCGCCTTTTTAAGCATCGGCGAACAGCCTAAATCGATCGATGCG
CCGCCGGTGGCGTTTCGTTCTCCGTGCTTTCTAGAAATAAACAATGAAAC
AAAGATGGAACCTACCCCACACTAGAGCAAGGAACTCGATATGGGGTTCA
AACGGTATTCCATACAGTGACGTAATATTTGGCGAAGCGAGCAGAAAAAC
AAACCTGAAATATCACAAGAGTTCAACATCTCCTATGCAAAGATTTAAAG
ATTTGCGAGGTCGGTCTCCGTGCTTTCAGCCCGACCCACCCGGCGGACCG
AAGCAGCTGACTACATCGGAACGGTTGGTTCCTTTGCGCCCCTCTTCCCC
CCCCCGGTTTTCCGCCCCCCCCGGTGTTTTCAACGCGTGCTGTACGCAGC
TTAGGGAGATGGTCGTGGAGCGGGACTCGGACGGGCTCAACCTCCTCATG
CACGCCGCGTCGTGCAGCGCACCTCCGTCTGCCCTCGCATCGCCTGATTC
CGTGCCAGGTGAGCACGCAGAGCCGGGCGCAATCTTGATCTATGTGTGCT
CATATCCCCGGGTGGGTCGTCTAGCCAGTCGTAGTGGAGGAAGGGGGCCA
GTGGGGCAGACGACGAATAAGCCAATAAAAAAGAAAAAAAAAAAAAAAAA
AAAACCCTGGGTGCGGGGGGGGCCGGGAAGGGGGGGGGGGGGGGGGGGGG
GCGCAAGGCCGAACGTCTCGGACAGACTACGGTGTCGATGCTCTGCCCGT
GTGCCAAATTTGCCGGGCAGGAATGCTCGACCCACCCCGGCGGCGATACT
ATAGTTTGCTTTTTCGCTGCGCCTGGCACAACAGCACTGGCGATTTTTTG
CACCGGCGTACCTGCCCTGCCTGCCCACCGCAACCTTCGGCCTCTCAGTC
CAAGGCATTTACATGTTTTGTTTTTTTACCCACCCACAGCAAACATCACC
ACTATTTAGATACCTTTTCAACGACGACCACTGCCGCCTCTCTGTTTCCG
TGCGACAGCATCGGCAGCGGGCCCCGCCACCGGCGACAAGGACGCCGGTG
GCTCGGACGGCGCCATCGTCAGCAGCAGTGGTAGCGGCGGTCCCGCGCCT
CTTGGCGCCGAGCCCCCGCACGTCGGCTTGCCGAAGCCCCCCCCCGCCGC
GTCGTCCGCCGCCACGCCGTCCACCATCGCTGCC back to topCoding sequence (CDS) from alignment at L-elsbetiae_contig6718:4268..7601- >mRNA_L-elsbetiae_contig6718.15459.1 ID=mRNA_L-elsbetiae_contig6718.15459.1|Name=mRNA_L-elsbetiae_contig6718.15459.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1332bp|location=Sequence derived from alignment at L-elsbetiae_contig6718:4268..7601- (Laminarionema elsbetiae ELsaHSoW15)
ATGAGGACTCAGCTGACCAACCGCGACAAAGAGGGTATGAACGTTGTCAT
GCTGGCGGCGAAAAGCTCAAACATGTCCGTGCTTGGAGCCCTGCTGACGG
AGGTTGCCCAAACTAAGATGAGGACTCAGCTGACCAACCGCGACAAAGAG
GGTATGAACGTTGTCATGCTGGCGGCGAAAAGCTCAAACATGTCCGTGCT
TGGAGCCCTGCTGACGGAGGTTGCCCAAACTAAGGCCCTGAGCGCCCTGG
ACATGCGCGATCACAAGCAGATGACGCTGCTGATGCATGCTGTTTGCAAC
GGACCGTCGCCGATATTCCAGGAAGCCCACAGGGCCATACGCAAGGCCTA
TGGAGGCGACGCTATCGCCCTGAGCGCCCTGGACATGCGCGATCACAAGC
AGATGACGCTGCTGATGCATGCTGTTTGCAACGGACCGTCGCCGATATTC
CAGGAAGCCCACAGGGCCATACGCAAGGCCTATGGAGGCGACGCTATCGA
GGTTGGCCGACACCTGATGCTCAAGTCCGCTGACGACAAGACGATCCTGA
TGCACGCGGCGGCCTCGGGCGACCCCATGGTCCTCAAGATGGTGTCCGAC
GCGTGCCAGAAAACCATCCGGCCGCAGACGGAGGTTGGCCGACACCTGAT
GCTCAAGTCCGCTGACGACAAGACGATCCTGATGCACGCGGCGGCCTCGG
GCGACCCCATGGTCCTCAAGATGGTGTCCGACGCGTGCCAGAAAACCATC
CGGCCGCAGACGCTTAGGGAGATGGTCGTGGAGCGGGACTCGGACGGGCT
CAACCTCCTCATGCACGCCGCGTCGTGCAGCGCACCTCCGTCTGCCCTCG
CATCGCCTGATTCCGTGCCAGCTTAGGGAGATGGTCGTGGAGCGGGACTC
GGACGGGCTCAACCTCCTCATGCACGCCGCGTCGTGCAGCGCACCTCCGT
CTGCCCTCGCATCGCCTGATTCCGTGCCAGCATCGGCAGCGGGCCCCGCC
ACCGGCGACAAGGACGCCGGTGGCTCGGACGGCGCCATCGTCAGCAGCAG
TGGTAGCGGCGGTCCCGCGCCTCTTGGCGCCGAGCCCCCGCACGTCGGCT
TGCCGAAGCCCCCCCCCGCCGCGTCGTCCGCCGCCACGCCGTCCACCATC
GCTGCCCATCGGCAGCGGGCCCCGCCACCGGCGACAAGGACGCCGGTGGC
TCGGACGGCGCCATCGTCAGCAGCAGTGGTAGCGGCGGTCCCGCGCCTCT
TGGCGCCGAGCCCCCGCACGTCGGCTTGCCGAAGCCCCCCCCCGCCGCGT
CGTCCGCCGCCACGCCGTCCACCATCGCTGCC back to top
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