mRNA_L-elsbetiae_contig6713.15455.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6713.15455.1
Unique NamemRNA_L-elsbetiae_contig6713.15455.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig6713.15455.1 vs. uniprot
Match: A0A6H5K182_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K182_9PHAE)

HSP 1 Score: 76.3 bits (186), Expect = 9.610e-14
Identity = 47/65 (72.31%), Postives = 48/65 (73.85%), Query Frame = 1 
Query:   19 KNGLLSCLEAVLEACPRSGSGSAAAGAALAALRKSMAACERSAKRPPPDAQAHALARAALATWLS 213
            K GLLSCL AVLE     GS S AA  AL ALR SM+ACER  KRPPPDAQ HALARAALA WLS
Sbjct: 1933 KKGLLSCLRAVLEVSR--GSESLAAAGALRALRTSMSACERLGKRPPPDAQTHALARAALAAWLS 1995
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BLAST of mRNA_L-elsbetiae_contig6713.15455.1 vs. uniprot
Match: D7G8A9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8A9_ECTSI)

HSP 1 Score: 75.5 bits (184), Expect = 1.770e-13
Identity = 46/66 (69.70%), Postives = 49/66 (74.24%), Query Frame = 1 
Query:   19 KNGLLSCLEAVLEACPRSGSGSAAAGAALAALRKSMAACERSAKRPPPDAQAHALARAALATWLSP 216
            K G LSCL AVLE     GS + AA  AL ALR SM+ACE+  KRPPPDAQAHALARAALA WLSP
Sbjct: 1494 KKGFLSCLRAVLEISR--GSENLAAAGALRALRTSMSACEQLGKRPPPDAQAHALARAALAAWLSP 1557
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6713.15455.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K182_9PHAE9.610e-1472.31Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G8A9_ECTSI1.770e-1369.70Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6713contigL-elsbetiae_contig6713:5661..6673 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score79.0
Seed ortholog evalue1.7e-12
Seed eggNOG ortholog2880.D7G8A9
Preferred nameURB1
KEGG rclassRC00435
KEGG koko:K01626,ko:K07766,ko:K14861
KEGG ReactionR01826
KEGG Pathwayko00400,ko01100,ko01110,ko01130,ko01230,ko02024,map00400,map01100,map01110,map01130,map01230,map02024
KEGG ModuleM00022
Hectar predicted targeting categoryother localisation
GOsGO:0001650,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0031974,GO:0031981,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044452,GO:0044464,GO:0070013
EggNOG free text desc.maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
EggNOG OGsKOG1791@1,KOG1791@2759
EC2.5.1.54,3.6.1.52
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03009
Exons2
Model size357
Cds size354
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816743.6687887-CDS-L-elsbetiae_contig6713:5662..58971622816743.6687887-CDS-L-elsbetiae_contig6713:5662..5897Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6713 5663..5897 -
1691683780.661169-CDS-L-elsbetiae_contig6713:5662..58971691683780.661169-CDS-L-elsbetiae_contig6713:5662..5897Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6713 5663..5897 -
1622816743.6792843-CDS-L-elsbetiae_contig6713:6554..66731622816743.6792843-CDS-L-elsbetiae_contig6713:6554..6673Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6713 6555..6673 -
1691683780.6781015-CDS-L-elsbetiae_contig6713:6554..66731691683780.6781015-CDS-L-elsbetiae_contig6713:6554..6673Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6713 6555..6673 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6713.15455.1prot_L-elsbetiae_contig6713.15455.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6713 5663..6673 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6713.15455.1

>prot_L-elsbetiae_contig6713.15455.1 ID=prot_L-elsbetiae_contig6713.15455.1|Name=mRNA_L-elsbetiae_contig6713.15455.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=118bp
AERRERKNGLLSCLEAVLEACPRSGSGSAAAGAALAALRKSMAACERSAK
RPPPDAQAHALARAALATWLSPSSGDSASSNGPAVAATPSGSSCPSSPSA
MLPPDSPFHQKKRSHQPP
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mRNA from alignment at L-elsbetiae_contig6713:5661..6673-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6713.15455.1 ID=mRNA_L-elsbetiae_contig6713.15455.1|Name=mRNA_L-elsbetiae_contig6713.15455.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1013bp|location=Sequence derived from alignment at L-elsbetiae_contig6713:5661..6673- (Laminarionema elsbetiae ELsaHSoW15)
GCAGAACGGCGGGAACGGAAGAACGGCTTGCTTTCTTGTCTCGAGGCGGT
GTTGGAGGCCTGTCCTCGAAGCGGGAGCGGGAGCGCCGCGGCTGGCGCTG
CGCTTGCCGCACTTCGGAAGTGAGATGCTGTGTTTTATTTATTTATTTAT
GTATACAAATGTCAGCGGTCACGTCTACGTCCGTCTGTGAGAAAACACTT
TTCAGAGGGACTACTGACTGACGGTGGTACAAACCTTTTTTTTATCGGTT
TCGTATTTTAGCACGGAAGAGAAAGGCTGCCTGTCTTCTAGGTTTCAAAA
AGGTCTCCTACCGTATGTGACACAAGATACCACACCCCCTGGACCGACTT
TGAGAGCTCCATCACTCCGTAACGAAGAGGGTGCCAGCACCAAACGACAC
ATTTTCGGACAGCCCTCGACTAGATCTTTCCAACGCCATCCCTTTCGGCA
GTGGCGCTCTTCTTGCTGGGGAGGAATCGAGTTTTGAGAATCTGTCCAGG
GGGTGTGGTATCTTGTGTCACCTACAGTACTCGAAGCGCCTTTTATTGCC
CGATGGTAACAACCTGTTTATCCGTAGTGCCCGAATCACTCGCCCACACA
GCGTACGTACACAAGCCTTGCGCGCGTGCGCACCGAATCGTTTTGCACCC
ACCCCCCCCACCACGTGCAGATTTTTCCGTGCCCCTCAAACGTCGTTTTC
TTTTGCCGCGCGCGACGATTCCCCGCGATGCTGTGTATGTGTGTATTTAT
GTGTTGTATGTACGCGGACACTGCAGATCCATGGCTGCGTGCGAGAGGTC
GGCTAAGCGCCCGCCGCCGGACGCCCAGGCACACGCTCTCGCCAGAGCGG
CCCTCGCGACCTGGCTGTCACCCTCCAGCGGCGACAGCGCCAGCAGCAAC
GGACCAGCGGTGGCGGCGACCCCCTCCGGCTCTAGCTGTCCGTCTTCACC
TTCGGCGATGCTGCCGCCGGACTCCCCCTTCCATCAGAAGAAGCGCTCAC
ACCAGCCGCCGCC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6713:5661..6673-

>mRNA_L-elsbetiae_contig6713.15455.1 ID=mRNA_L-elsbetiae_contig6713.15455.1|Name=mRNA_L-elsbetiae_contig6713.15455.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=708bp|location=Sequence derived from alignment at L-elsbetiae_contig6713:5661..6673- (Laminarionema elsbetiae ELsaHSoW15)
GCAGAACGGCGGGAACGGAAGAACGGCTTGCTTTCTTGTCTCGAGGCGGT
GTTGGAGGCCTGTCCTCGAAGCGGGAGCGGGAGCGCCGCGGCTGGCGCTG
CGCTTGCCGCACTTCGGAAGCAGAACGGCGGGAACGGAAGAACGGCTTGC
TTTCTTGTCTCGAGGCGGTGTTGGAGGCCTGTCCTCGAAGCGGGAGCGGG
AGCGCCGCGGCTGGCGCTGCGCTTGCCGCACTTCGGAAATCCATGGCTGC
GTGCGAGAGGTCGGCTAAGCGCCCGCCGCCGGACGCCCAGGCACACGCTC
TCGCCAGAGCGGCCCTCGCGACCTGGCTGTCACCCTCCAGCGGCGACAGC
GCCAGCAGCAACGGACCAGCGGTGGCGGCGACCCCCTCCGGCTCTAGCTG
TCCGTCTTCACCTTCGGCGATGCTGCCGCCGGACTCCCCCTTCCATCAGA
AGAAGCGCTCACACCAGCCGCCGATCCATGGCTGCGTGCGAGAGGTCGGC
TAAGCGCCCGCCGCCGGACGCCCAGGCACACGCTCTCGCCAGAGCGGCCC
TCGCGACCTGGCTGTCACCCTCCAGCGGCGACAGCGCCAGCAGCAACGGA
CCAGCGGTGGCGGCGACCCCCTCCGGCTCTAGCTGTCCGTCTTCACCTTC
GGCGATGCTGCCGCCGGACTCCCCCTTCCATCAGAAGAAGCGCTCACACC
AGCCGCCG
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