mRNA_L-elsbetiae_contig671.15451.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
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Overview
Homology
BLAST of mRNA_L-elsbetiae_contig671.15451.1 vs. uniprot
Match: A0A6H5KSR4_9PHAE (GRIP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSR4_9PHAE) HSP 1 Score: 568 bits (1464), Expect = 1.850e-169 Identity = 736/1620 (45.43%), Postives = 857/1620 (52.90%), Query Frame = 3
Query: 45 APSDGAAKKELSNDDLKSYIRKQKVKIRKLEEQNKASSVDAGLLNSLREEVEVWKSKFQEQVEATAVSXXXXXSALPGGESGDSANANLGRALEDAAEAQEEASRWKEKAVAAQELEVRVLALEEELQQAKASSELVQQSLKASHQEERAQLEALVDSLRLERSALETRQQQSAXXXXXXXXXXXXXXXXXXEAKATSKTVELSRQVETLLQGAGALEHRLVGTQQERDAAVARSSELEGELARLATGTEEAMAAIAAXXXXXXXXXXXXXXXXXXTEAAL-EAAEAKAASGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVELRSEVDGLREAARAAESGMKTME----------------------------------EELDEARAGLEQATERIAAAEREAGQVAREKVGRGGXXXXXXXXXXXXXXXXEHLSSSSVA----------LKEELGALGAEKNALVA--------------------------------------------------------------------------------------LVSEAEAARSAAEEKMKXXXXXXXXXXXXXXXXXXXXXXXXXAAP----APSAGNS-------GGPSSMEAEVEVA-LRGRCEELEGEAAAAAEKIAVLEXXXXXXXXXXXXXXXXXXEDTAAEQVASEEEGEXXXXXQAAEGVPAATSTGEAVVATAVEEGEEDGGVQGSRLQQQEVLETRLQEAQSSAEESKQAAREMEAVVAGLREEQGTLNARVLELTAEVAAAAGASSALQETLNNVTKEKEDTLAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAESLRRDKVGGDIVRCGVEPAAASACIAFVEPDMLLFRSRQALGRSSPITESSDGSR----EQASLQSHLQEAAAEATRSQQALAQHLASSEEKKNGDETEASXXXXXXXXXXXXXXEQMASQKDKLRKAAARLRSLKEERDTATEKLASTSSLLENSEKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAEETLRLSQGSDARVVTLEADLKAERARLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETTKTRLKDLFAKYKAVQAKHGAAQDEVEALKLEAGKVSGLEAGRTELQSKVEGLDSKLAAADAALKEKEEEFARTASEKEQAAKVEKSAKEDLEVKVKRLKTMLAKLQKSRDLKDADIAALKAPPPPPKAFTVVLRVKHDGSTWCLLR-TPQAASSGDAGK----ADGAAAPGGGSQDAGLKQQWVTEDKARAWIAGGSSDSDAALWAPVVQDAFEERAIAAAAEARVSAAGALSTRQELEALSSEFSKYKARAHTALKKATSSGADDKRKDELIAALQSEQARLTALLEETTSSLERQLSDERGMSKGREDDLEA---VSERLETAQEQVRELQGSLRDQERRVAQLQEAEDGHSEEMSALREARDELKSHLKAAKAQAYESSSIAQRLQEELEELSKAKARDSGSRRGSGNWDTHGDGGWAGQQIL 4439
APSDGAAKK LSND LK+YIRK + KI +LEEQNKAS+VDAGLL+SLREEVE WK+KFQEQVEATA + +A P G + +AL D +AQEE SRWKEKAVAAQELEVR L +EEELQQ KASSEL Q++LKA HQEE A+LEA++DSLR E SA E ++Q SA A+A SK+ E QVE+LL+ AG LEHRLVG QQERD AVA++S+LE + RL E+ A A E+AL E A AA XXXXXXXXXXXXXXXXXXXX A ELRSEVD LREAA A +EL RA +++ + AA + E ++ RE XXXXXXXXXXXXXXXX + +EL + AE + L A L + + A R+ + XXXXXXXXXXXXXXXXX P APS G+ AE E+A LR RC ELE AA A+EKIA LE TA + A+ EE Q +G AAT EA + E D + S Q+ E+LE RL+EA+ E SK+AARE E VVAGLREEQ LN+RVLELTAEVA A A S+ Q++L +E+ED LR+ +V + + AA R R L + E+ + R E+ASL+ L L ++ S + G A+ EQ+A QKDKL+KAAARLRSLKEERD ATEK+AST++LLE SEK XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX EE + + S AR LEADL AER+ XXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXX ++KTRLKDLFAKYKAVQ E+E+EFA+ EKEQ A EKSAKEDLEVKVKRLK++L+KLQKS KDAD+AALKAP PPPKAFTV LRV+H+GSTWC ++ T Q A+S D GK A+ +AAP D KQQWVTEDKAR W+AGGSS SD ALW VVQ+AFEERA+AAAAEARV+A GAL+TRQELEALS+EF+KYKARAHTALKKATS+GA+DKRKDELIAALQSE ARLT +E S LETAQEQVR LQGSLRDQER++AQLQEAE+GHSEEMSALREARDELKS LKAAKAQA ESS IAQRLQEELEE++K++ D G+G+WD DGGWAGQQ+L
Sbjct: 11 APSDGAAKKGLSNDQLKAYIRKARAKITELEEQNKASAVDAGLLSSLREEVEAWKAKFQEQVEATAAAAT---AAEPSDADG------MEQALRDVVQAQEETSRWKEKAVAAQELEVRFLGMEEELQQTKASSELAQENLKALHQEECARLEAVIDSLRQEISASEAQRQASA-------------------AEAASKSQE---QVESLLRDAGLLEHRLVGVQQERDEAVAQASQLEEQARRLEEAVVESREAAEAR------------------ESALKEEAVRGAAXXXXXXXXXXXXXXXXXXXXXXEGASRLQRAMAEAEELRSEVDRLREAAAEAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDELASTRAEVDELRAKAAAVQEEVDRL-REAAXEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVADELASTRAEVDELRAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXADAASQDLATSSAALRAERDALSARLATVEEEXXXXXXXXXXXXXXXXXXQPPETEAPSVGDGEXXXXXXXXXXXXXAEEELAALRTRCAELEIGAAVASEKIAALEARVRDADAVSPSS-------TAEDAAAAPEEASGGDRGQDEDGDAAATVV-EATMPGVTSEAATDTREEESGAQR-ELLEKRLREAE---EASKEAAREKEGVVAGLREEQAALNSRVLELTAEVATAREALSSSQKSLE---RERED----------------------------------------------GLRKARVLTERAEAAEQAAATXXXXXXXXXQE---RERDLLEQREKAAEAEEALRRLRQEKASLEGRLXXXXXXXXXXXXELTAAISGSTASQEG----AAEAVAKAEGERAALEEQVAGQKDKLKKAAARLRSLKEERDAATEKVASTAALLETSEKNLADAEARSRSLEEAIGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNATCRLREAEDLLRSTSEESMVLRRGL----------EERCQRLEESAARAPALEADLAAERSGRRELXXXXXXXXXXXXXXXXXXXXXXXXXXXXMGALQGQVDAANXXXXXXXXXXXXXXXXXXSSKTRLKDLFAKYKAVQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEREDEFAKMVGEKEQVAAAEKSAKEDLEVKVKRLKSLLSKLQKSSHSKDADLAALKAPAPPPKAFTVALRVRHEGSTWCFVKATQQPATSEDGGKDTAPAEASAAP---KPD---KQQWVTEDKARTWLAGGSSSSDVALWPKVVQEAFEERAVAAAAEARVAAEGALATRQELEALSTEFAKYKARAHTALKKATSNGAEDKRKDELIAALQSEVARLTKRVEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASAELETAQEQVRGLQGSLRDQERKLAQLQEAEEGHSEEMSALREARDELKSQLKAAKAQANESSCIAQRLQEELEEVTKSRGNDDRRGNGNGSWDARADGGWAGQQLL 1496
BLAST of mRNA_L-elsbetiae_contig671.15451.1 vs. uniprot
Match: D8LKN4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKN4_ECTSI) HSP 1 Score: 190 bits (482), Expect = 3.990e-45 Identity = 339/909 (37.29%), Postives = 403/909 (44.33%), Query Frame = 3
Query: 168 GLLNSLREEVEVWKSKFQEQVEATAVSXXXXXSALPGGESGDSANANLGRALEDAAEAQEEASRWKEKAVAAQELEVRVLALEEELQQAKASSELVQQSLKASHQEERAQLEALVDSLRLERSALETRQQQSAXXXXXXXXXXXXXXXXXXEAKATSKTVELSRQVETLLQGAGALEHRLVGTQQERDAAVARSSELEGELARLATGTEEAMAAIAAXXXXXXXXXXXXXXXXXXTEAAL-EAAEAKAASGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVELRSEVDGLREAARAAESG---------------------------------MKTMEEELDEARAGLEQATERIAAAEREAGQVAREKVGRGGXXXXXXXXXXXXXXXXE-----HLSSSSVAL---KEELGALGAEKNALVALVSEAEAARSAAEEKMKXXXXXXXXXXXXXXXXXXXXXXXXXA-----------------APAPSAGNSGGPSSMEAEVE--------VALRGRCEELEGEAAAAAEKIAVLEXXXXXXXXXXXXXXXXXXEDTAAEQVASEEEGEXXXXXQAAEGVPAATSTGEAVVATAVEEGEEDGGVQGSRLQQQEVLETRLQEAQSSAEESKQAAREMEAVVAGLREEQGTLNARVLELTAEVAAAAGASSALQETLNNVTKEKEDTLAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAESLRRDKVGGDIVRCGVEPA----------AASACIAFVEPDMLLFRSRQALGRSSPITESSDGSR----------EQASLQSHLQEAAAEATRSQQALAQHLASSEEKKNGDETEASXXXXXXXXXXXXXXEQMASQKDKLRKAAARLRSLKEERDTATEKLASTSSLLENSEK 2633
GLL+SLREEVEVWK+KFQEQVEATA + +A PG G L +AL DAA+AQEEASRWKEKAVAAQELEVR L +EEELQQ KAS EL Q++LKASHQEE A+LEA+V+SLR E SA E ++Q SA A+A SK+ E QVE+ L+ AG+LEHRLVG QQERD AVAR+S+LE + RL E+ A E+AL E A +AA XXXXXXXXXXXXXXXXXX X A ELRSEVD LREAA + + E+DE RA + E +A+A RE + XXXXXXXXXXXXXXXX L +S L +E + LG E EAEA AA + + XXXX APS G+ P ALR RCEELE AA A+EKIA LE D XXXXX + + Q E+L+ RL+E + +A+E ARE E VVAGLREEQ LN+RVLELTAEVAAA A SA QE L +E+ED L XXXXXX + AA A E+ASL+ L+EAA E +R +Q L ++ S + G A+ EQ+A QKDKL+KAAARLRSLKEERD ATEK+A TS+LLE SEK
Sbjct: 4 GLLSSLREEVEVWKAKFQEQVEATAAAAG---AAEPGDADG------LEQALSDAAQAQEEASRWKEKAVAAQELEVRFLGMEEELQQTKASGELAQENLKASHQEECARLEAVVESLRQEVSASEAQRQASA-------------------AEAASKSQE---QVESFLRDAGSLEHRLVGVQQERDEAVARASQLEEQARRLEEAAVESREAAEDG------------------ESALREEAAREAAXXXXXXXXXXXXXXXXXXXXEXEGASRLQRAVAEAEELRSEVDRLREAAAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXADELASARAEVDELRAKVAAVGEMVASANRERDEAVXXXXXXXXXXXXXXXXXXXXXXXXXXGLKGELEASRAELEGERERVACLGQELRQAFKDKEEAEARADAASQDLATSSAALRAERDALSARLATAEXXXXXXXXXXXXXXXXXXXXXETEAPSVGDGERPEEXXXXXXXXXXXXXIAALRARCEELEIGAAVASEKIAALEARVRDVDAVSSSTAG----DAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEEESVAQLELLKKRLREVKEAAKEP---AREKEGVVAGLREEQAALNSRVLELTAEVAAAREALSASQECLE---REREDGLRQARQLTERAEAAEQAAEEAAAAGQERERDLEEQRXXXXXXXXXXXXXEXXXXXXXXXXXXXXXXXXXXXXXXAAEATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEKASLEGRLEEAAEETSRLRQELTAAISGSTASQEG----AAEAVAKAEGERAALEEQVAGQKDKLKKAAARLRSLKEERDAATEKVAFTSALLETSEK 849
BLAST of mRNA_L-elsbetiae_contig671.15451.1 vs. uniprot
Match: D7FMD5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMD5_ECTSI) HSP 1 Score: 84.0 bits (206), Expect = 5.790e-16 Identity = 39/55 (70.91%), Postives = 47/55 (85.45%), Query Frame = 3
Query: 3468 VKRLKTMLAKLQKSRDLKDADIAALKAPPPPPKAFTVVLRVKHDGSTWCLLRTPQ 3632
VKRLK++L+KLQKS KDAD+AALKAP PPPKAFTV LRV+H+GSTWC ++ Q
Sbjct: 2 VKRLKSLLSKLQKSSHSKDADLAALKAPAPPPKAFTVALRVRHEGSTWCFVKATQ 56 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig671.15451.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig671.15451.1 >prot_L-elsbetiae_contig671.15451.1 ID=prot_L-elsbetiae_contig671.15451.1|Name=mRNA_L-elsbetiae_contig671.15451.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=1185bp MKTMKDEQQQQQQQQQQQQQQEEPPETAAPAPSAGNSGGPSSMEAEVEVAback to top mRNA from alignment at L-elsbetiae_contig671:5156..29309+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig671.15451.1 ID=mRNA_L-elsbetiae_contig671.15451.1|Name=mRNA_L-elsbetiae_contig671.15451.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=24154bp|location=Sequence derived from alignment at L-elsbetiae_contig671:5156..29309+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig671:5156..29309+ >mRNA_L-elsbetiae_contig671.15451.1 ID=mRNA_L-elsbetiae_contig671.15451.1|Name=mRNA_L-elsbetiae_contig671.15451.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=7110bp|location=Sequence derived from alignment at L-elsbetiae_contig671:5156..29309+ (Laminarionema elsbetiae ELsaHSoW15)back to top |