mRNA_L-elsbetiae_contig6706.15450.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6706.15450.1
Unique NamemRNA_L-elsbetiae_contig6706.15450.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig6706.15450.1 vs. uniprot
Match: D7FVQ7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVQ7_ECTSI)

HSP 1 Score: 164 bits (414), Expect = 5.630e-46
Identity = 85/117 (72.65%), Postives = 97/117 (82.91%), Query Frame = 2 
Query:    2 QDGVFHFNTLLSLDLASPYFSSGRQEERFEVVVMENKEDGHVSFSIDSFPSMDPEAMELFFIQKVEQHRQRRAAFFSKIDEQAAGDARAVLNVGTSDPAKLAVAMMDYAPKQLLALL 352
            +DGVFH+NTLL+LDLASPYFSSGRQEERFEVVVME+KEDGH+SFSIDSFP MDP A+E F+IQKV+QHRQ R  FFSKID +       + N  TSDPAKLAVA+MDY P +LL LL
Sbjct:    7 KDGVFHYNTLLTLDLASPYFSSGRQEERFEVVVMEHKEDGHISFSIDSFPDMDPVALEHFYIQKVDQHRQSRDMFFSKIDRET----DEMANPETSDPAKLAVAVMDYDPHELLVLL 119
[Close]
BLAST of mRNA_L-elsbetiae_contig6706.15450.1 vs. uniprot
Match: A0A7S2CNQ6_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CNQ6_9STRA)

HSP 1 Score: 93.6 bits (231), Expect = 5.370e-18
Identity = 44/80 (55.00%), Postives = 59/80 (73.75%), Query Frame = 2 
Query:    2 QDGVFHFNTLLSLDLASPYFSSGRQEERFEVVVMENKEDGHVSFSIDSFPSMDPEAMELFFIQKVEQHRQRRAAFFSKID 241
            QDG+FH NT LS+  +SPYF SG   E +EV+VM +KEDG  SF+ID FP MD +A+E F+IQKVE+HR+ R   F +++
Sbjct:   44 QDGIFHMNTFLSMQFSSPYFKSGALVEVYEVMVMRHKEDGTFSFAIDDFPEMDDDAIERFWIQKVEEHRRSREEAFRQME 123
[Close]
BLAST of mRNA_L-elsbetiae_contig6706.15450.1 vs. uniprot
Match: A0A7S1G8R3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1G8R3_9STRA)

HSP 1 Score: 89.4 bits (220), Expect = 6.810e-18
Identity = 44/80 (55.00%), Postives = 60/80 (75.00%), Query Frame = 2 
Query:    2 QDGVFHFNTLLSLDLASPYFSSGRQEERFEVVVMENKEDGHVSFSIDSFPSMDPEAMELFFIQKVEQHRQRRAAFFSKID 241
            QDG+FH NT L+L LASP+F+ G  E R +V+VM+  EDG +SF+ID FP MD +A+E F+I+KVE HR+ R A F+ I+
Sbjct:   17 QDGIFHHNTFLTLVLASPHFAGGVPESRHQVMVMKALEDGVLSFAIDEFPEMDEDAIEAFWIEKVEAHRRFREASFAAIE 96
[Close]
BLAST of mRNA_L-elsbetiae_contig6706.15450.1 vs. uniprot
Match: A0A7S2WVW5_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WVW5_9STRA)

HSP 1 Score: 91.7 bits (226), Expect = 8.480e-18
Identity = 44/76 (57.89%), Postives = 60/76 (78.95%), Query Frame = 2 
Query:    2 QDGVFHFNTLLSLDLASPYFSSGRQEERFEVVVMENKEDGHVSFSIDSFPSMDPEAMELFFIQKVEQHRQRRAAFF 229
            QDGVFHFNT L+L+L SP+F+SG   E+FEV+VM++K+DG  SF+ID FP M+ +A+E F+I+KVE+HR  R   F
Sbjct:   53 QDGVFHFNTHLNLELTSPHFASGAASEKFEVMVMKHKDDGSYSFAIDDFPEMNEDAIEEFWIRKVERHRLLRDEAF 128
[Close]
BLAST of mRNA_L-elsbetiae_contig6706.15450.1 vs. uniprot
Match: A0A7S2CU23_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CU23_9STRA)

HSP 1 Score: 90.9 bits (224), Expect = 7.460e-17
Identity = 43/80 (53.75%), Postives = 59/80 (73.75%), Query Frame = 2 
Query:    2 QDGVFHFNTLLSLDLASPYFSSGRQEERFEVVVMENKEDGHVSFSIDSFPSMDPEAMELFFIQKVEQHRQRRAAFFSKID 241
            Q+GVFH NT L+L+LA P+F SG   E ++V+VM + EDG  SF+ID FP MD +A+E F+IQKVEQHR+ R   F +++
Sbjct:  106 QEGVFHHNTFLTLELACPHFKSGHDAETYDVMVMRHLEDGTYSFAIDEFPEMDEDAIETFWIQKVEQHRRYREETFRQME 185
[Close]
BLAST of mRNA_L-elsbetiae_contig6706.15450.1 vs. uniprot
Match: A0A7S3H248_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H248_9STRA)

HSP 1 Score: 85.9 bits (211), Expect = 4.830e-16
Identity = 39/83 (46.99%), Postives = 62/83 (74.70%), Query Frame = 2 
Query:    2 QDGVFHFNTLLSLDLASPYFSSGRQEERFEVVVMENKEDGHVSFSIDSFPSMDPEAMELFFIQKVEQHRQRRAAFFSKIDEQA 250
            QDG+FHFNTLL+L+L SP+F S +  E ++++VM +KEDG  + +ID FP MD +A+E F+I+K+E  R++R   F +++ +A
Sbjct:   73 QDGIFHFNTLLTLELESPHFKSKKSVEEYKMIVMLHKEDGVKALAIDEFPVMDEDAIEEFYIRKIENRRKQREESFRRLEIEA 155
[Close]
BLAST of mRNA_L-elsbetiae_contig6706.15450.1 vs. uniprot
Match: A0A1V9ZMN4_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZMN4_9STRA)

HSP 1 Score: 80.5 bits (197), Expect = 3.770e-14
Identity = 40/78 (51.28%), Postives = 58/78 (74.36%), Query Frame = 2 
Query:    2 QDGVFHFNTLLSLDLASPYFSSGRQEERFEVVVMENKE-DGHVSFSIDSFPSMDPEAMELFFIQKVEQHRQRRAAFFS 232
            Q+G FH+NT L+L+LASP+F SG+  E +E+VVME+ + D   SF+ID+FP MD +A+E F+I+ VE  RQ+R   F+
Sbjct:   73 QEGDFHYNTYLTLELASPHFKSGQPVEPYEIVVMESLDADRRKSFAIDNFPEMDDDAIEAFWIEMVEHRRQQRREIFA 150
[Close]
BLAST of mRNA_L-elsbetiae_contig6706.15450.1 vs. uniprot
Match: A0A8J2SB82_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SB82_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 5.740e-12
Identity = 50/140 (35.71%), Postives = 74/140 (52.86%), Query Frame = 2 
Query:    2 QDGVFHFNTLLSLDLASPYFSSGRQEERFEVVVMENKEDGHVSFSIDSFPSMDPEAMELFFIQKVEQHRQRRAAFFSKIDEQAAGDARAVLNVGTSDPAKLAVAMMDYAPKQLLALLGESVQEDPIRQAVGAEIARRLEQ 421
            Q GVFH NT L+L+LASP+F S    ERFEV+ M   +D   SF+ID+FP M  E++E F I+ VE+ R  R   F +++  A          G  D +  A + ++ +   LL  L +S Q    R+     + RR ++
Sbjct:   66 QRGVFHENTFLTLELASPHFLSRNATERFEVIDMVRTDDKSRSFAIDTFPEMSEESIEEFSIRNVERRRALREQAFEELELDACA-------AGLCDDSDDAASYLERSSSSLLEELKDSSQYPDRRRRAQDALERRAKE 198
[Close]
BLAST of mRNA_L-elsbetiae_contig6706.15450.1 vs. uniprot
Match: A0A7S3XTW5_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XTW5_HETAK)

HSP 1 Score: 73.2 bits (178), Expect = 1.010e-11
Identity = 36/79 (45.57%), Postives = 54/79 (68.35%), Query Frame = 2 
Query:    2 QDGVFHFNTLLSLDLASPYFSSGRQEERFEVVVMENKEDGHVSFSIDSFPSMDPEAMELFFIQKVEQHRQRRAAFFSKI 238
            Q+G++H N  L L L+S +F+S ++ E F  +VM++ EDG  SF+ID FP  D EA+E F+I KVE+HR+ R   F ++
Sbjct:   25 QEGIYHENIYLELSLSSIHFASRKESETFNFIVMKHLEDGVRSFAIDRFPYFDDEAIEEFYIGKVEKHRRWREKVFQEL 103
[Close]
BLAST of mRNA_L-elsbetiae_contig6706.15450.1 vs. uniprot
Match: A0A1V9ZD80_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZD80_9STRA)

HSP 1 Score: 72.4 bits (176), Expect = 1.300e-11
Identity = 36/80 (45.00%), Postives = 56/80 (70.00%), Query Frame = 2 
Query:   14 FHFNTLLSLDLASPYFSSGRQEERFEVVVMENKE-DGHVSFSIDSFPSMDPEAMELFFIQKVEQHRQRRAAFFSKIDEQA 250
            +H N  ++++LASPYF SG++ E +E+VVME  + D   SF+ID+FP MD +A+E+F+I+ VE+ R+ R   F K   +A
Sbjct:   52 YHDNIYMTIELASPYFKSGKESEVYEIVVMEALDGDRRKSFAIDNFPEMDEDALEMFWIEMVERKRRNRRDIFEKWTAEA 131
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6706.15450.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 17
Match NameE-valueIdentityDescription
D7FVQ7_ECTSI5.630e-4672.65Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2CNQ6_9STRA5.370e-1855.00Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S1G8R3_9STRA6.810e-1855.00Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A7S2WVW5_9STRA8.480e-1857.89Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2CU23_9STRA7.460e-1753.75Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S3H248_9STRA4.830e-1646.99Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A1V9ZMN4_9STRA3.770e-1451.28Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
A0A8J2SB82_9STRA5.740e-1235.71Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S3XTW5_HETAK1.010e-1145.57Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A1V9ZD80_9STRA1.300e-1145.00Uncharacterized protein n=1 Tax=Thraustotheca clav... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6706contigL-elsbetiae_contig6706:5974..10690 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score105.1
Seed ortholog evalue2.1e-20
Seed eggNOG ortholog2880.D7FVQ7
Hectar predicted targeting categoryother localisation
EggNOG OGs2E62Z@1,2SCUI@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-03_003360.1
Exons4
Model size1269
Cds size333
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6706.15450.1prot_L-elsbetiae_contig6706.15450.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6706 6074..9854 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816742.9068246-UTR-L-elsbetiae_contig6706:5973..60731622816742.9068246-UTR-L-elsbetiae_contig6706:5973..6073Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6706 5974..6073 +
1691683780.05421-UTR-L-elsbetiae_contig6706:5973..60731691683780.05421-UTR-L-elsbetiae_contig6706:5973..6073Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6706 5974..6073 +
1622816742.9706926-UTR-L-elsbetiae_contig6706:9854..106901622816742.9706926-UTR-L-elsbetiae_contig6706:9854..10690Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6706 9855..10690 +
1691683780.1081815-UTR-L-elsbetiae_contig6706:9854..106901691683780.1081815-UTR-L-elsbetiae_contig6706:9854..10690Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6706 9855..10690 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816742.92237-CDS-L-elsbetiae_contig6706:6073..61021622816742.92237-CDS-L-elsbetiae_contig6706:6073..6102Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6706 6074..6102 +
1691683780.0660992-CDS-L-elsbetiae_contig6706:6073..61021691683780.0660992-CDS-L-elsbetiae_contig6706:6073..6102Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6706 6074..6102 +
1622816742.9368484-CDS-L-elsbetiae_contig6706:6643..67071622816742.9368484-CDS-L-elsbetiae_contig6706:6643..6707Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6706 6644..6707 +
1691683780.075992-CDS-L-elsbetiae_contig6706:6643..67071691683780.075992-CDS-L-elsbetiae_contig6706:6643..6707Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6706 6644..6707 +
1622816742.9477613-CDS-L-elsbetiae_contig6706:9043..92091622816742.9477613-CDS-L-elsbetiae_contig6706:9043..9209Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6706 9044..9209 +
1691683780.0863354-CDS-L-elsbetiae_contig6706:9043..92091691683780.0863354-CDS-L-elsbetiae_contig6706:9043..9209Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6706 9044..9209 +
1622816742.959928-CDS-L-elsbetiae_contig6706:9780..98541622816742.959928-CDS-L-elsbetiae_contig6706:9780..9854Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6706 9781..9854 +
1691683780.097389-CDS-L-elsbetiae_contig6706:9780..98541691683780.097389-CDS-L-elsbetiae_contig6706:9780..9854Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6706 9781..9854 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6706.15450.1

>prot_L-elsbetiae_contig6706.15450.1 ID=prot_L-elsbetiae_contig6706.15450.1|Name=mRNA_L-elsbetiae_contig6706.15450.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=111bp
MENKEDGHVSFSIDSFPSMDPEAMELFFIQKVEQHRQRRAAFFSKIDEQA
AGDARAVLNVGTSDPAKLAVAMMDYAPKQLLALLGESVQEDPIRQAVGAE
IARRLEQPTI*
back to top

mRNA from alignment at L-elsbetiae_contig6706:5974..10690+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6706.15450.1 ID=mRNA_L-elsbetiae_contig6706.15450.1|Name=mRNA_L-elsbetiae_contig6706.15450.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4717bp|location=Sequence derived from alignment at L-elsbetiae_contig6706:5974..10690+ (Laminarionema elsbetiae ELsaHSoW15)
TCAGGATGGCGTGTTTCATTTCAACACGCTTCTCTCCCTGGACCTAGCCA
GTCCTTATTTCTCGAGCGGGCGGCAGGAAGAAAGGTTTGAAGTGGTGGTC
ATGGAGAACAAAGAAGACGGCCATGTTAGGTGAGACGGAACTATGTTGTT
GACAAGTACAAGTATTTCGACGAAAACTGGGCGAAAAATGCAGCCAGTGG
CAACTAACTCAACCAAGAAGCAGGATACATTTGGAAGGTACTCGGTTGTT
GCGTACCATGGCCCGGTTTTGGCTGACGAAGGAGCTGCATTCAGTATCGG
ACCGCCATCCATGTCTGTCTCGTGTAGTACGAGAACACGACTTAGACCCC
CTCAAAAACTATTTTGCATTATTTCGCCATTGCGCGAGCGGTTCGTTTAG
GATAGGATTTAGATGTTGCGTTATCGACACATAAACTGGCCTGATATCTC
TAGTGGCGTAGTTGGAAACCTCCTTAACTGTCTGACCTCGCAGCAAAATT
GAATTTTCAAATATCTGGGGGATGGATGAAAAGCTCGTAATTTTGCGGCG
GAAATCCGTTGGTTGATTGCAGCAAACCGCACCCGACAATGCGCCGTGTG
GTCCGTATGGTTGCATTCTACCAGCCAAATATCTTCCGCCCTGTCCTTGG
TTCAATGCTTTGATTCCCAGCTTCTCCATCGACTCCTTCCCGAGCATGGA
CCCAGAGGCGATGGAACTTTTTTTTATTCAGAAGGTAGGCACGTAGACTA
TCACTGCCTTCTTCAATATCTTTAACTCCTGGCTGGCTCACCGCCTCTGA
GAGCTATCTGGAAGCTAGCTAGAGCCCTACAAAGCCCGCCGGCAGTAAAT
GAAACCTGCCGTTGCAGGCACTTGACGGGAATTACTCCTTACTCACTCCC
GGCGCCACCCCGTACCTATTCACTCCGCGAGGTGACAGCGAATCGGTAGT
TTTTCATTCTAGAAGCACAGTCTTCCAGGAGCGAGGGGCGAGCGAAGCCA
AAAACGACATCTGGAAATCCCTTTTGCACACGACGTACAAGAAGAATGCA
ATCACCTGTAGTTTGGCTTCACTAGGGTAACACAAACATTTTCACGATGC
CTTTTACTATATCCTTGACGGTAACTCCAGTTCCAACTAAGTTCTGGAAA
TATTCACTTGCTACCACAGTACGCCCACCCGAAGTAGATGTATATTTGTA
TGCCCGATACTTCTGCTCCATCCTGCAAATGCCTCACTGCTGTTTTATTC
ATTTGGCTCGCAAAGGCTACGTACATACGCGAGCGCTGGGGCACACACAC
CGACCACCGCTCCCCGCCAAGCCTCGAGGTTTTTCTCGGTTAACCCGCTC
CACTGAGACCAATGCTTATGGGAATCGAATCTGAATCTGAATCTTGATGT
AGGTGGGGGGCGAGCGAGGCTTGATTTCAGTAATGTAACTTGATGCACGC
ATCTTTTTTGGGGGTGAAATCGTACTTTCAACCCTGGCAAGATTCAGAAA
GATATGGAACACGTGCTCGAGACCCAGATTTTCGGCCAAGATCTGAGAAC
AATAGATAGTTGGATGAATCTTCTTTTTTTGGGGAGGGGGTTGCGAACCA
GCCCAGCCAATATAATCAGCAAGTGCGACTGAGTTCCAAACATATCGCTC
ACTTCAAGGGCTCCGAGCAACCCTTGGCTGACGGCTTCTATTCTACCCGC
TGGTTGGTGATGATCGCTCGCGAGGCAAGCGTACAAACAAATTTCGAAGC
TACGAAGAATTCAAACCGTCTCGGTGCAGCTAACAGTGCAGCCATTGCAC
AGAGACACAAGGGTATTGCGTTCAACTTCTCACTCCCCATAGCACGGATC
GAAGTTAAACCTGGCAGGATGTGATCTCTGCTCCCTGTCCTTTTCGGTTT
AGCGTGGCTTAGCAGCTCGTTCACTCAATCGAAGAGAGAAGCATGTGTGT
GTTCACAAGCTGTCTGTTGAGATTGTTTTTGAGGTGTTCAACAAACCTGT
CTATTTTTCAAGTGAGGAAAAAAGGAAACATATACTTTCTGGAGGAAACT
GAGCACCACGCGCGGAGCTTTCTCTGTCGATTGAATGAACAAGCTGATCC
CTTGGCTCAATCGAAGAAGGGTAGGGAACAGGCGTGACATTTTGCTAGTT
TTTACGCCGATCTGTGGTCTCGCGAGCGAGAAATCGAGCGCGGTGTCCTC
CTGTCTCTGCCAAAAGGCAACCGTTTGTGCTTCACGAAGACGTGTATCTC
TTCGCGTTTTGGGTGATTCGCAATGATATCGTCACCAACCAGCGGGCAGA
ATTATAGGACAGTCAGCCTGGAGTTGCTCGGAGTCCTTGGTGGGAGCTAT
ACGTTTAGAAATCAGGTCGCACTTTGCCCCCACCCCCCAAATCAAGATCA
AGATTTGTCCCTCAGAAGTATTATGCGAGAGTAATAACGTTCCTATATCG
ATCGTACTTTGCGCCAATAATACCCCGGATTGCAGCATGATAGACCGTTA
TCGTCGCGTCAAACAGCTCCAAGTTTATGAAGCGCCACGCTATATAGCTC
GCTTGGTTTGGTGGCGACCCTGGCTTCGGATCGGGAATAAAAACCCAAAT
GTATCTCTCCCACCCCCCCCCTGGTCGCGGCTTATTTTCTATTCTGGATA
CCGGCTGTGGCAGCTAGGAGTAATCAAAACACTGGCTGGTAAAGTTGAGT
TGAGCACGAGTCACGCATTTGTTTCTGGATGTCCGGCAACGGTGATCGGG
ATTCGCGTTTGACAGCGGCTCATGCACGAACGCCAGCGAAGTATTGCGTA
AGTTGCTAAAAATGATCTCTCGAGCGGGTGAAGAGTTGCCCGCCCCTTCT
TGCAACCTCGTGTCTGCTAATCGATTGAATCAAACATTTTGTGCATGGTC
TCCGGCCCATTTCCCCACCACCATCTCTCCTATATGCTGCAGCAGTAGTT
AAATCCTCCCACACCCCCAACAACGCCAGCTATAACTTTGATTCCAACAG
GCTCATGTTTCGAAACCTGAGGCTTGCGATTGTCCCTCTCCCCGGCTTAC
CGAAATGCCACCGCATGAAGGTCGAGCAGCATCGACAACGAAGGGCTGCA
TTCTTCTCGAAAATTGATGAGCAGGCGGCAGGTGATGCTCGCGCGGTGTT
GAATGTGGGAACTTCTGATCCAGCAAAGCTTGCAGTTGCGATGATGGACT
ATGCTCCCAAGCAACTGCTGGCGCTCCTTGGCGAAAGTAAGTTCGACCTA
GTTCATTTCCTGCTCGCAAAGGGTGCGAGCAAGTTCATTTCCTCTCTGCG
TTTTTTCACATATGGCATAACTTTGTATGCTAGCCGACGTCAGTGAGGTT
AGACGCAGGGTTAGAGCCGAGCATCATGCATTCGGCACGCAGACAAAGTT
CAAGCGTATTTCCTGTGGTAGGGTTGGTCAGGTATCACCAATCAAACACC
ATTCTGCCCGAAAACCACCCGAGTTTCCTCATTGTTTTTTTCTGCCGATA
GCCCTTACGGGTGACTGGCGTCTGGCTTCGACGCCTTTGATCTCCGCCCA
GCAACCGTGTTATGAAATATGAAAACTGATATTACTGTGGTTGTTTTTGT
GGATACCGTGGTCTTGAAACACTTGAAGATCGTTGGCTGCCAGCGATGTC
AAAATGATCACTAATTACAACAATGAGATTCGCACGAGCCCAGTTCAAAA
CTGCAAGATCTACCAAATGACTCACATGTGTTGCCGTGCATAAAAAAGAA
GAAAGGGACACCCCTGACTGACAAAACTGTACTACACGTGGCGTGTATGT
CGGCCAGGTGTCCAGGAAGACCCGATCAGACAGGCAGTTGGGGCGGAGAT
TGCGCGTCGATTAGAGCAACCCACAATATAAGTGGGAAATACAACACTTT
TGAAGCTGGATCTCTCGGACCTCAGGCAAGGGGCAGGGTAGTACCGGACC
TCCTCAAGTGGCTGCACTAATTAATATACAAACGGCATGGCTTCATTCAC
ATTCCCGCGCAAACTTGGTGGGATGTTTGTCTCAGAGTCTATGAGAGGAC
CAGGTTACTGTCAAAGTCACTTCGGCACTTGAGCTCCGGTGCTGATATAT
TTATCCTGGAGATGAGTGTATTGCTGTCTCTTAACGGTGAATCAAGCAGC
CGCTGTCAACGGTGATTGCGTCGGTGTGCGGTGTATAGTCTAACAGTGGA
CCATCACATCAAATACGATGGTGTCACCGTCAGTTTCTTGCGTACTACAT
CGACTAGAGCAAGAACAAAATTACGAACTACTTCTTGGCCTACGCCCACG
CCCTTATGTCTGAGCCGCATGCGAGGGGACCGTCGAGGTCACCATAGGCA
AGTCAGTGGAGAGTTTTCTCGCGGGGTTTTCTCCCCATGGATGACACCGC
CTCCCAGAGCGCGTTGTTCTGCTGGGAGCTATGGAGAGGGTCAAGGGATA
CTAAGGGGAAGAGAGCGACTTGGTGTTCCACTAAAGAAGGCCTCGTGGCG
CTCTATATTCAAGAAGGAAGACGAGGGGATCCAGAAAATGAGCGCTACGA
GGCACGAGGAATGACATGTAGGGCAAGATCAAGAAATAGGCGGCACGGTT
TGTGGTTAAGTGATACATATAAAAAATGGGAGCGTCGGTGAAGCGGTGGC
TTGAGAAGGAGGCCGGAGGCGGGAATGCATCATGAATAAATCGACAAAAA
GCAGCAGGGAAGGCAGG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig6706:5974..10690+

>mRNA_L-elsbetiae_contig6706.15450.1 ID=mRNA_L-elsbetiae_contig6706.15450.1|Name=mRNA_L-elsbetiae_contig6706.15450.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=666bp|location=Sequence derived from alignment at L-elsbetiae_contig6706:5974..10690+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGAGAACAAAGAAGACGGCCATGTTAGATGGAGAACAAAGAAGACGGC
CATGTTAGCTTCTCCATCGACTCCTTCCCGAGCATGGACCCAGAGGCGAT
GGAACTTTTTTTTATTCAGAAGCTTCTCCATCGACTCCTTCCCGAGCATG
GACCCAGAGGCGATGGAACTTTTTTTTATTCAGAAGGTCGAGCAGCATCG
ACAACGAAGGGCTGCATTCTTCTCGAAAATTGATGAGCAGGCGGCAGGTG
ATGCTCGCGCGGTGTTGAATGTGGGAACTTCTGATCCAGCAAAGCTTGCA
GTTGCGATGATGGACTATGCTCCCAAGCAACTGCTGGCGCTCCTTGGCGA
AAGTCGAGCAGCATCGACAACGAAGGGCTGCATTCTTCTCGAAAATTGAT
GAGCAGGCGGCAGGTGATGCTCGCGCGGTGTTGAATGTGGGAACTTCTGA
TCCAGCAAAGCTTGCAGTTGCGATGATGGACTATGCTCCCAAGCAACTGC
TGGCGCTCCTTGGCGAAAGTGTCCAGGAAGACCCGATCAGACAGGCAGTT
GGGGCGGAGATTGCGCGTCGATTAGAGCAACCCACAATATAAGTGTCCAG
GAAGACCCGATCAGACAGGCAGTTGGGGCGGAGATTGCGCGTCGATTAGA
GCAACCCACAATATAA
back to top