mRNA_L-elsbetiae_contig6700.15445.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6700.15445.1
Unique NamemRNA_L-elsbetiae_contig6700.15445.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6700.15445.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6700contigL-elsbetiae_contig6700:7696..8197 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size502
Cds size354
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6700.15445.1prot_L-elsbetiae_contig6700.15445.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6700 7723..8076 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816742.349455-UTR-L-elsbetiae_contig6700:7695..77221622816742.349455-UTR-L-elsbetiae_contig6700:7695..7722Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6700 7696..7722 +
1691683779.637423-UTR-L-elsbetiae_contig6700:7695..77221691683779.637423-UTR-L-elsbetiae_contig6700:7695..7722Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6700 7696..7722 +
1622816742.3729067-UTR-L-elsbetiae_contig6700:8076..81971622816742.3729067-UTR-L-elsbetiae_contig6700:8076..8197Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6700 8077..8197 +
1691683779.6597228-UTR-L-elsbetiae_contig6700:8076..81971691683779.6597228-UTR-L-elsbetiae_contig6700:8076..8197Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6700 8077..8197 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816742.362969-CDS-L-elsbetiae_contig6700:7722..80761622816742.362969-CDS-L-elsbetiae_contig6700:7722..8076Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6700 7723..8076 +
1691683779.6493607-CDS-L-elsbetiae_contig6700:7722..80761691683779.6493607-CDS-L-elsbetiae_contig6700:7722..8076Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6700 7723..8076 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6700.15445.1

>prot_L-elsbetiae_contig6700.15445.1 ID=prot_L-elsbetiae_contig6700.15445.1|Name=mRNA_L-elsbetiae_contig6700.15445.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=118bp
MAPPPVYDSFCRPHTSLQRRHASFACPPTETRQKYDALARRAHTTLLPCF
SSRDRACPSPIALSSQSTTPANTARLSTSTIQHTYIVLYIPTNTATAAAT
GASSLERPRTPTTHKQS*
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mRNA from alignment at L-elsbetiae_contig6700:7696..8197+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6700.15445.1 ID=mRNA_L-elsbetiae_contig6700.15445.1|Name=mRNA_L-elsbetiae_contig6700.15445.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=502bp|location=Sequence derived from alignment at L-elsbetiae_contig6700:7696..8197+ (Laminarionema elsbetiae ELsaHSoW15)
GGGAAAGGGGTGGATGGGTGGGAGTTTATGGCGCCCCCCCCTGTGTACGA
TAGTTTCTGCCGTCCGCATACATCCCTGCAGCGACGACATGCAAGCTTTG
CTTGCCCACCTACCGAAACGCGACAAAAATACGACGCGCTGGCACGACGT
GCGCACACGACTTTACTACCATGTTTCTCTTCACGAGATCGCGCATGCCC
CTCTCCTATCGCCCTGTCAAGTCAAAGCACAACACCGGCCAATACTGCAA
GGTTATCAACATCAACAATACAACACACATACATAGTTTTGTACATACCA
ACCAATACAGCAACAGCAGCGGCGACGGGGGCTTCTTCTCTCGAACGCCC
TAGAACGCCTACTACACACAAACAATCATGACGCTGGCCAACCCGAGATA
TCTACCACGCAGAACTGCAAAAAAGGCACACAACACACCAGGACAGCTGC
CTGGCATGCTCTGATTAAGCCGGGGGCAAATGTGCTGCGGTGGCTCTCGA
AG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6700:7696..8197+

>mRNA_L-elsbetiae_contig6700.15445.1 ID=mRNA_L-elsbetiae_contig6700.15445.1|Name=mRNA_L-elsbetiae_contig6700.15445.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=708bp|location=Sequence derived from alignment at L-elsbetiae_contig6700:7696..8197+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGCGCCCCCCCCTGTGTACGATAGTTTCTGCCGTCCGCATACATCCCT
GCAGCGACGACATGCAAGCTTTGCTTGCCCACCTACCGAAACGCGACAAA
AATACGACGCGCTGGCACGACGTGCGCACACGACTTTACTACCATGTTTC
TCTTCACGAGATCGCGCATGCCCCTCTCCTATCGCCCTGTCAAGTCAAAG
CACAACACCGGCCAATACTGCAAGGTTATCAACATCAACAATACAACACA
CATACATAGTTTTGTACATACCAACCAATACAGCAACAGCAGCGGCGACG
GGGGCTTCTTCTCTCGAACGCCCTAGAACGCCTACTACACACAAACAATC
ATGAATGGCGCCCCCCCCTGTGTACGATAGTTTCTGCCGTCCGCATACAT
CCCTGCAGCGACGACATGCAAGCTTTGCTTGCCCACCTACCGAAACGCGA
CAAAAATACGACGCGCTGGCACGACGTGCGCACACGACTTTACTACCATG
TTTCTCTTCACGAGATCGCGCATGCCCCTCTCCTATCGCCCTGTCAAGTC
AAAGCACAACACCGGCCAATACTGCAAGGTTATCAACATCAACAATACAA
CACACATACATAGTTTTGTACATACCAACCAATACAGCAACAGCAGCGGC
GACGGGGGCTTCTTCTCTCGAACGCCCTAGAACGCCTACTACACACAAAC
AATCATGA
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