mRNA_L-elsbetiae_contig67.15442.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig67.15442.1
Unique NamemRNA_L-elsbetiae_contig67.15442.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig67.15442.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig67contigL-elsbetiae_contig67:57285..57895 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size611
Cds size504
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig67.15442.1prot_L-elsbetiae_contig67.15442.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig67 57321..57824 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816741.4481952-UTR-L-elsbetiae_contig67:57284..573201622816741.4481952-UTR-L-elsbetiae_contig67:57284..57320Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig67 57285..57320 +
1691683779.0443606-UTR-L-elsbetiae_contig67:57284..573201691683779.0443606-UTR-L-elsbetiae_contig67:57284..57320Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig67 57285..57320 +
1622816741.4774184-UTR-L-elsbetiae_contig67:57824..578951622816741.4774184-UTR-L-elsbetiae_contig67:57824..57895Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig67 57825..57895 +
1691683779.0743601-UTR-L-elsbetiae_contig67:57824..578951691683779.0743601-UTR-L-elsbetiae_contig67:57824..57895Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig67 57825..57895 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816741.4640703-CDS-L-elsbetiae_contig67:57320..578241622816741.4640703-CDS-L-elsbetiae_contig67:57320..57824Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig67 57321..57824 +
1691683779.061367-CDS-L-elsbetiae_contig67:57320..578241691683779.061367-CDS-L-elsbetiae_contig67:57320..57824Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig67 57321..57824 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig67.15442.1

>prot_L-elsbetiae_contig67.15442.1 ID=prot_L-elsbetiae_contig67.15442.1|Name=mRNA_L-elsbetiae_contig67.15442.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=168bp
MPCRHGVYCSTSFHPIHLAYFLLFRCTHVTVEAHVKLAVYVHYCIVHLTR
RATSRSHEEGGGYPHRTFLFHFLFLSPPTCVPPAVFALIFVARRVQPPPS
LVDAMHSRSLCTHEHFFWLFGFLLQSRKITTPTWNRTADVAATTFCRFTK
KPPDHRGDRYGKYNCGE*
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mRNA from alignment at L-elsbetiae_contig67:57285..57895+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig67.15442.1 ID=mRNA_L-elsbetiae_contig67.15442.1|Name=mRNA_L-elsbetiae_contig67.15442.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=611bp|location=Sequence derived from alignment at L-elsbetiae_contig67:57285..57895+ (Laminarionema elsbetiae ELsaHSoW15)
CACACGAACGAATGGCATGACGTAGCAAGGCATGACATGCCATGCCGGCA
TGGTGTGTACTGTTCTACTAGTTTTCATCCCATCCATTTAGCCTATTTTC
TCCTCTTCCGCTGCACACACGTTACGGTGGAGGCACACGTGAAACTTGCG
GTGTATGTTCACTACTGTATTGTACACCTGACTAGACGTGCCACCAGCCG
GAGTCACGAAGAAGGGGGTGGGTACCCACACCGGACTTTTCTTTTTCATT
TTTTATTTTTGTCCCCACCTACCTGTGTACCTCCTGCGGTGTTCGCCTTG
ATTTTTGTCGCGAGAAGGGTCCAGCCGCCCCCTTCCCTCGTCGACGCAAT
GCATAGTCGAAGTTTGTGTACTCACGAGCATTTTTTTTGGCTTTTTGGCT
TTCTGCTGCAAAGTCGCAAGATAACCACCCCCACTTGGAATCGAACTGCG
GACGTTGCCGCTACGACATTTTGTAGGTTTACGAAGAAACCACCAGACCA
CCGGGGTGACCGCTATGGAAAGTACAATTGTGGCGAGTAGCCTCAGAAGT
TGTTCAAACTCGTTTCCCGAGCACTTGGTCGACTACGCGCCGTTTTTTTT
AATGATTTGCA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig67:57285..57895+

>mRNA_L-elsbetiae_contig67.15442.1 ID=mRNA_L-elsbetiae_contig67.15442.1|Name=mRNA_L-elsbetiae_contig67.15442.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1008bp|location=Sequence derived from alignment at L-elsbetiae_contig67:57285..57895+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCCATGCCGGCATGGTGTGTACTGTTCTACTAGTTTTCATCCCATCCA
TTTAGCCTATTTTCTCCTCTTCCGCTGCACACACGTTACGGTGGAGGCAC
ACGTGAAACTTGCGGTGTATGTTCACTACTGTATTGTACACCTGACTAGA
CGTGCCACCAGCCGGAGTCACGAAGAAGGGGGTGGGTACCCACACCGGAC
TTTTCTTTTTCATTTTTTATTTTTGTCCCCACCTACCTGTGTACCTCCTG
CGGTGTTCGCCTTGATTTTTGTCGCGAGAAGGGTCCAGCCGCCCCCTTCC
CTCGTCGACGCAATGCATAGTCGAAGTTTGTGTACTCACGAGCATTTTTT
TTGGCTTTTTGGCTTTCTGCTGCAAAGTCGCAAGATAACCACCCCCACTT
GGAATCGAACTGCGGACGTTGCCGCTACGACATTTTGTAGGTTTACGAAG
AAACCACCAGACCACCGGGGTGACCGCTATGGAAAGTACAATTGTGGCGA
GTAGATGCCATGCCGGCATGGTGTGTACTGTTCTACTAGTTTTCATCCCA
TCCATTTAGCCTATTTTCTCCTCTTCCGCTGCACACACGTTACGGTGGAG
GCACACGTGAAACTTGCGGTGTATGTTCACTACTGTATTGTACACCTGAC
TAGACGTGCCACCAGCCGGAGTCACGAAGAAGGGGGTGGGTACCCACACC
GGACTTTTCTTTTTCATTTTTTATTTTTGTCCCCACCTACCTGTGTACCT
CCTGCGGTGTTCGCCTTGATTTTTGTCGCGAGAAGGGTCCAGCCGCCCCC
TTCCCTCGTCGACGCAATGCATAGTCGAAGTTTGTGTACTCACGAGCATT
TTTTTTGGCTTTTTGGCTTTCTGCTGCAAAGTCGCAAGATAACCACCCCC
ACTTGGAATCGAACTGCGGACGTTGCCGCTACGACATTTTGTAGGTTTAC
GAAGAAACCACCAGACCACCGGGGTGACCGCTATGGAAAGTACAATTGTG
GCGAGTAG
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