mRNA_L-elsbetiae_contig67.15441.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig67.15441.1
Unique NamemRNA_L-elsbetiae_contig67.15441.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig67.15441.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig67contigL-elsbetiae_contig67:50254..50939 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size287
Cds size159
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig67.15441.1prot_L-elsbetiae_contig67.15441.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig67 50381..50939 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816741.3908062-UTR-L-elsbetiae_contig67:50253..503801622816741.3908062-UTR-L-elsbetiae_contig67:50253..50380Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig67 50254..50380 -
1691683779.0134284-UTR-L-elsbetiae_contig67:50253..503801691683779.0134284-UTR-L-elsbetiae_contig67:50253..50380Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig67 50254..50380 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816741.4042046-CDS-L-elsbetiae_contig67:50380..504571622816741.4042046-CDS-L-elsbetiae_contig67:50380..50457Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig67 50381..50457 -
1691683779.023463-CDS-L-elsbetiae_contig67:50380..504571691683779.023463-CDS-L-elsbetiae_contig67:50380..50457Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig67 50381..50457 -
1622816741.4167461-CDS-L-elsbetiae_contig67:50857..509391622816741.4167461-CDS-L-elsbetiae_contig67:50857..50939Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig67 50858..50939 -
1691683779.03398-CDS-L-elsbetiae_contig67:50857..509391691683779.03398-CDS-L-elsbetiae_contig67:50857..50939Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig67 50858..50939 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig67.15441.1

>prot_L-elsbetiae_contig67.15441.1 ID=prot_L-elsbetiae_contig67.15441.1|Name=mRNA_L-elsbetiae_contig67.15441.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=53bp
LLCGRSALDQHASPLSTQSCAGQHSCAGTFTNVLSSFRCYRASHRLHRGH
NI*
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mRNA from alignment at L-elsbetiae_contig67:50254..50939-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig67.15441.1 ID=mRNA_L-elsbetiae_contig67.15441.1|Name=mRNA_L-elsbetiae_contig67.15441.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=686bp|location=Sequence derived from alignment at L-elsbetiae_contig67:50254..50939- (Laminarionema elsbetiae ELsaHSoW15)
CTTCTGTGTGGGCGCTCCGCCCTTGATCAACACGCTTCGCCTTTGTCAAC
ACAGAGCTGTGCAGGTCAACACAGCTGCGCAGGTCTGTGCCCCTCAGCCG
TATGTTATTTGTACCGAGCAGCTGCTTGCTGCTCTGACGTGTTTTTCTTC
AACTGCAAGAGCAGCTGCTGTCATCCTGACGTTCGTTTGGGCCATTGAGT
ACCGACAGCCTACGATGGCATATCGGAACAGTAGTTTTCCCGTTCAAATC
TATCATTGTATTTATGTAGTCTTATTTATGTAGTCGAATTTACTACGCTG
TTCTTGTGCTAATTTTCTACGCAGTGTAGCAATGAGAGAGAAGCAGGAGT
ACACGACAATTGCATTGGAGTATCATTTTTGTGCTGGTGTTTTCTCGCCG
CTCTTCGCTCCAGACTACGTAGGTCTAATCGGTGTCGTTGCCGCTTGTTT
ATTGCTATTCTGCGCGTACACACATTCTGTAGGGACCTTTACGAATGTGT
TATCTTCCTTTCGCTGCTACCGGGCATCGCATCGCCTTCACCGAGGCCAC
AACATTTGAAGAATAAACTGGTCACCAACAGGGAAGAGAAGGGGACGAAA
GGACGGCTGGGGCGGGACGCTTAAGAGGAAGAGCGCACAAAGCATGCACA
CCATCCACGAAGGATGTAGACAACTGGACGTCGTAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig67:50254..50939-

>mRNA_L-elsbetiae_contig67.15441.1 ID=mRNA_L-elsbetiae_contig67.15441.1|Name=mRNA_L-elsbetiae_contig67.15441.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=318bp|location=Sequence derived from alignment at L-elsbetiae_contig67:50254..50939- (Laminarionema elsbetiae ELsaHSoW15)
CTTCTGTGTGGGCGCTCCGCCCTTGATCAACACGCTTCGCCTTTGTCAAC
ACAGAGCTGTGCAGGTCAACACAGCTGCGCAGCTTCTGTGTGGGCGCTCC
GCCCTTGATCAACACGCTTCGCCTTTGTCAACACAGAGCTGTGCAGGTCA
ACACAGCTGCGCAGGGACCTTTACGAATGTGTTATCTTCCTTTCGCTGCT
ACCGGGCATCGCATCGCCTTCACCGAGGCCACAACATTTGAGGACCTTTA
CGAATGTGTTATCTTCCTTTCGCTGCTACCGGGCATCGCATCGCCTTCAC
CGAGGCCACAACATTTGA
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