mRNA_L-elsbetiae_contig67.15438.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig67.15438.1
Unique NamemRNA_L-elsbetiae_contig67.15438.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig67.15438.1 vs. uniprot
Match: D7FH12_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH12_ECTSI)

HSP 1 Score: 124 bits (310), Expect = 1.990e-30
Identity = 69/103 (66.99%), Postives = 76/103 (73.79%), Query Frame = 1 
Query:   37 RVGEGADAL-AQDQQRVADELNEKLDVLTTLTYPNSSISPQDAGFMVSALCEAVPWRSARLSARVAQLFVSLCAKQQKVAFLVWQLNIVLDFFVGSLAPTAGE 342
            R G G  A  A+ +Q    ELNE+L +L  LTYPNSSISPQDAGFM+SALCEAVP  S  LSARVAQLF  LCAKQQ+V+FL WQLNIVLD FV SL   A E
Sbjct:  118 RAGAGTAAFPARPEQLDGAELNEQLGILARLTYPNSSISPQDAGFMLSALCEAVPRSSRGLSARVAQLFELLCAKQQRVSFLAWQLNIVLDLFVASLPSAAAE 220
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig67.15438.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FH12_ECTSI1.990e-3066.99Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig67contigL-elsbetiae_contig67:13529..15456 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size366
Cds size363
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig67.15438.1prot_L-elsbetiae_contig67.15438.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig67 13530..15456 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816741.7544174-CDS-L-elsbetiae_contig67:13529..136461622816741.7544174-CDS-L-elsbetiae_contig67:13529..13646Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig67 13530..13646 -
1691683779.2270775-CDS-L-elsbetiae_contig67:13529..136461691683779.2270775-CDS-L-elsbetiae_contig67:13529..13646Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig67 13530..13646 -
1622816741.7667606-CDS-L-elsbetiae_contig67:14295..143921622816741.7667606-CDS-L-elsbetiae_contig67:14295..14392Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig67 14296..14392 -
1691683779.2406332-CDS-L-elsbetiae_contig67:14295..143921691683779.2406332-CDS-L-elsbetiae_contig67:14295..14392Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig67 14296..14392 -
1622816741.7799606-CDS-L-elsbetiae_contig67:15307..154561622816741.7799606-CDS-L-elsbetiae_contig67:15307..15456Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig67 15308..15456 -
1691683779.2528055-CDS-L-elsbetiae_contig67:15307..154561691683779.2528055-CDS-L-elsbetiae_contig67:15307..15456Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig67 15308..15456 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig67.15438.1

>prot_L-elsbetiae_contig67.15438.1 ID=prot_L-elsbetiae_contig67.15438.1|Name=mRNA_L-elsbetiae_contig67.15438.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=121bp
TAASVVGNNGDGRVGEGADALAQDQQRVADELNEKLDVLTTLTYPNSSIS
PQDAGFMVSALCEAVPWRSARLSARVAQLFVSLCAKQQKVAFLVWQLNIV
LDFFVGSLAPTAGEESPPPPQ
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mRNA from alignment at L-elsbetiae_contig67:13529..15456-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig67.15438.1 ID=mRNA_L-elsbetiae_contig67.15438.1|Name=mRNA_L-elsbetiae_contig67.15438.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1928bp|location=Sequence derived from alignment at L-elsbetiae_contig67:13529..15456- (Laminarionema elsbetiae ELsaHSoW15)
ACGGCTGCCAGCGTCGTGGGCAACAACGGAGACGGCAGGGTCGGTGAGGG
AGCAGATGCTCTGGCGCAGGACCAACAACGTGTTGCTGATGAACTCAACG
AGAAGCTGGACGTCTTGACTACGCTCACATATCCCAACTCGTCCATAAGG
TCTGCTACGCGCTCTGGTAGTCCTTGTGTACGCGAATGCAGTAGCATCGG
TAGCCCCTTTCTGCCGTTGTTGAAAAATGGAAATAGGCAAACGGATGTTC
TGGCTTCGAACACACCCCTCACGCAGCAGTCGAGGCACACCAGTCAGTAG
GGTGCGTGCGACAGGCGCTCCAGTGTAGAACTGATTTTGATACGCGACGA
GTTTGACAGTACTTAAATTTGTCAGTGTAGTGGGAATACGTATCTAAGCA
AACAGAGGGAGCGAAGGGTATCTAAGTGTAATTTAGGTAATTTACACGTG
TATCTTGTACATAGCGAGAAACCCTCGCGTCCCGACTGTACGACAGAACT
AGCTGCTGTTGTCTGTATAGGCATATCGTATTCTGATCTAGCCTAAAAAC
GCGTATAGATATGCGTCAGAAATTAGACAGGTACTCTTTTCGCGTACGAA
GACAAACGTAGATGGGGCCCTGCACCTCTTGGGGTGAATCTTGATGACAC
CGTTCGAGCTCTGGGGTTGATTTAGTTAGACAAGGACGCGTGCACAGAAA
GGTGAGTGCCCGCGGTAGACAACAAAAACAGGAAGGAAGTACATGCGTAT
TGTAGCAGCGCCCAGACCACACCAGCTCACCGAAGACGCATTGACTAGAA
GCCCCCCCCCCCGCTCACTGCACTTTTTTCCCTGAACTCTATTGACCCAC
TCCAAGAGACGCCGGAACCACCGTGCACGAGCTCAAATGAAGAGATTAGT
GCGCATGTACATCCCACTGCCATCCATATGTTCGTTCAGCGATGCGTCCG
TTTGATTTCAGCGCCGCGGCTGACGGGTGCGCTAACCAAGATCCGACGTA
TGTACGAGGTGTATGTTCCTGAACCGCTCAGTTTCGAGACTCGTTTGCTT
GCGTCTTGTTTCAGCCCCCAGGACGCGGGATTCATGGTGTCGGCGCTGTG
CGAAGCGGTCCCCTGGCGCTCGGCCAGGCTGTCCGCGAGGGTTGCCCAGC
TCTTCGTGTCGGTGAGATGAGCAGCACTTTTGGCGCACACGTATCTGTGT
GCCCGACTTGTACGTGTTAGTACATATGGTACATACTTTTGCGCTCCCAT
GCATATTTTCCAACAAAAGTCGAGCAATTTTTCAGTTTCACCCACATCGT
GTACCCCCCGCGGTTGGTGATGTTGGCTTGTGTCCAGTTTTGTTTTCACC
TCACATGGCGTGCAGAGGGCAGCGGGGGGGCTCCAGATCTGCGTCTGATG
TTTTGTTTTTTGTGCTTTGCGGACCCTTCGGGTCCATTTATTTCTTTTCA
TTTTTCAGTATACCCTTTTTAGGGTGAGATATCCTGTGACCACGGGAATC
GATCGCGTCAGTGTTGGATTAGGACGGACCCATGGAGGTCTGTACTAGAC
AGAGAGTTCGGAACGGTTTTTAATGTGACGACAGCAGCAATAACAACAGC
ACGCACAGGTTGGTCCAGCTCGCCCTCTCACGCTTATTCCGCACAGATGC
GCGCAATGTTCTCCGGCCCCGACGTGCCATGTGCTCGCCCGTGTTTGCAC
GCGCGTGCGCGCCCTATCGTACGTGTTGTCTCTTATCGCCACCCCCCCCC
CCCCCCCGATCCGATTCAACCGCCCTGCTGCGAAACCAAACACGCGTACG
CCTTCCACAGCTCTGTGCCAAGCAGCAAAAGGTGGCGTTCTTGGTGTGGC
AGCTGAACATCGTGCTGGACTTCTTCGTGGGGTCCTTGGCACCTACAGCG
GGAGAAGAATCGCCGCCGCCTCCACAAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig67:13529..15456-

>mRNA_L-elsbetiae_contig67.15438.1 ID=mRNA_L-elsbetiae_contig67.15438.1|Name=mRNA_L-elsbetiae_contig67.15438.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=726bp|location=Sequence derived from alignment at L-elsbetiae_contig67:13529..15456- (Laminarionema elsbetiae ELsaHSoW15)
ACGGCTGCCAGCGTCGTGGGCAACAACGGAGACGGCAGGGTCGGTGAGGG
AGCAGATGCTCTGGCGCAGGACCAACAACGTGTTGCTGATGAACTCAACG
AGAAGCTGGACGTCTTGACTACGCTCACATATCCCAACTCGTCCATAAGA
CGGCTGCCAGCGTCGTGGGCAACAACGGAGACGGCAGGGTCGGTGAGGGA
GCAGATGCTCTGGCGCAGGACCAACAACGTGTTGCTGATGAACTCAACGA
GAAGCTGGACGTCTTGACTACGCTCACATATCCCAACTCGTCCATAAGCC
CCCAGGACGCGGGATTCATGGTGTCGGCGCTGTGCGAAGCGGTCCCCTGG
CGCTCGGCCAGGCTGTCCGCGAGGGTTGCCCAGCTCTTCGTGTCGCCCCC
AGGACGCGGGATTCATGGTGTCGGCGCTGTGCGAAGCGGTCCCCTGGCGC
TCGGCCAGGCTGTCCGCGAGGGTTGCCCAGCTCTTCGTGTCGCTCTGTGC
CAAGCAGCAAAAGGTGGCGTTCTTGGTGTGGCAGCTGAACATCGTGCTGG
ACTTCTTCGTGGGGTCCTTGGCACCTACAGCGGGAGAAGAATCGCCGCCG
CCTCCACAACTCTGTGCCAAGCAGCAAAAGGTGGCGTTCTTGGTGTGGCA
GCTGAACATCGTGCTGGACTTCTTCGTGGGGTCCTTGGCACCTACAGCGG
GAGAAGAATCGCCGCCGCCTCCACAA
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