mRNA_L-elsbetiae_contig67.15437.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig67.15437.1
Unique NamemRNA_L-elsbetiae_contig67.15437.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig67.15437.1 vs. uniprot
Match: A0A6H5K415_9PHAE (DUF4042 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K415_9PHAE)

HSP 1 Score: 168 bits (425), Expect = 1.640e-45
Identity = 102/142 (71.83%), Postives = 114/142 (80.28%), Query Frame = 1 
Query:    7 SDRRDCARALAQLLYENGERLGTRFDDVLPPLLGLAAPSAVDLETKHAALDALANLSLKNWPGFTETQRQAVCSCLTQNFVAHWRAVSSFSSPPRIAALAXXXXXXXXXXXXXXXXXXXXERKVLASATRGLACAVGKSGVT 432
            S +RDC RALAQLLYENGERLGTRFDDV+PPLL LA PSA+DL+T+HAALDALANL LKNW GF E QRQ  CSCLT+NFVA+WRA +S S         XXXXXXXXXXXXX       ERK+LASATRGLACA+GK+GV+
Sbjct:   79 SFQRDCTRALAQLLYENGERLGTRFDDVVPPLLRLADPSAIDLDTRHAALDALANLCLKNWAGFAEPQRQMTCSCLTRNFVANWRAFASSSXXXXXXXXXXXXXXXXXXXXXXPG-----ERKILASATRGLACAIGKAGVS 215
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BLAST of mRNA_L-elsbetiae_contig67.15437.1 vs. uniprot
Match: D7FH12_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH12_ECTSI)

HSP 1 Score: 149 bits (377), Expect = 4.750e-39
Identity = 70/87 (80.46%), Postives = 77/87 (88.51%), Query Frame = 1 
Query:    7 SDRRDCARALAQLLYENGERLGTRFDDVLPPLLGLAAPSAVDLETKHAALDALANLSLKNWPGFTETQRQAVCSCLTQNFVAHWRAV 267
            S +RDC RALAQLLYENGERLGTRFDDV+PPLL LA PSA+DL+T+HAALDALANL LKNW GF E QRQA+CSCLT+NFVAHW  V
Sbjct:  248 SGQRDCTRALAQLLYENGERLGTRFDDVVPPLLRLADPSAIDLDTRHAALDALANLCLKNWAGFAEQQRQAICSCLTRNFVAHWARV 334
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig67.15437.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K415_9PHAE1.640e-4571.83DUF4042 domain-containing protein n=1 Tax=Ectocarp... [more]
D7FH12_ECTSI4.750e-3980.46Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig67contigL-elsbetiae_contig67:12657..13463 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size439
Cds size435
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816741.7053945-CDS-L-elsbetiae_contig67:12658..129501622816741.7053945-CDS-L-elsbetiae_contig67:12658..12950Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig67 12659..12950 -
1691683779.1909099-CDS-L-elsbetiae_contig67:12658..129501691683779.1909099-CDS-L-elsbetiae_contig67:12658..12950Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig67 12659..12950 -
1622816741.7186956-CDS-L-elsbetiae_contig67:13320..134631622816741.7186956-CDS-L-elsbetiae_contig67:13320..13463Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig67 13321..13463 -
1691683779.2118137-CDS-L-elsbetiae_contig67:13320..134631691683779.2118137-CDS-L-elsbetiae_contig67:13320..13463Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig67 13321..13463 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig67.15437.1prot_L-elsbetiae_contig67.15437.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig67 12659..13463 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig67.15437.1

>prot_L-elsbetiae_contig67.15437.1 ID=prot_L-elsbetiae_contig67.15437.1|Name=mRNA_L-elsbetiae_contig67.15437.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=145bp
SPSDRRDCARALAQLLYENGERLGTRFDDVLPPLLGLAAPSAVDLETKHA
ALDALANLSLKNWPGFTETQRQAVCSCLTQNFVAHWRAVSSFSSPPRIAA
LASAAVSSSAATGGGGGGGGAAERKVLASATRGLACAVGKSGVTA
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mRNA from alignment at L-elsbetiae_contig67:12657..13463-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig67.15437.1 ID=mRNA_L-elsbetiae_contig67.15437.1|Name=mRNA_L-elsbetiae_contig67.15437.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=807bp|location=Sequence derived from alignment at L-elsbetiae_contig67:12657..13463- (Laminarionema elsbetiae ELsaHSoW15)
TCGCCGTCGGATAGGCGTGATTGTGCCAGGGCGCTGGCGCAGCTCCTCTA
CGAGAACGGCGAGCGCCTCGGCACGCGGTTCGACGACGTGCTTCCACCGC
TGCTCGGCCTGGCGGCACCGTCGGCCGTTGATCTAGAGACGAAGTGAGAC
ATTCTCTCTCTCTGCATGTGTGTGTGTGTGTGTATGTGTGTGTTTGCCGA
CGATGACATGGGTGGGGTGACACGAAAAAAGTAGCCTTGCTTCATATGTA
GTGCCTGCCTGGTCCAGGCGGGAGGGTTTTCGCTGTGATCCCACGAGCAA
GCAGCCGCACACGAGCGGTGCAATGCAGATTCATGATGCTCCATGCCTCC
CGCTCCCTCCCCGCCCCGCGACCCTACTTGCCGGATGAGCATGCATTGGT
TAGGCCGTGATCCTAACCCCCCCTCATTCTGCGCTTCTTTCACGCGGCGT
CGCCTCCGCCGGTGCCACCCACGCCCCCCGGGCCCCCCCCCCAAAAAAAA
AAAAAACGGAAAGGCACGCCGCGCTGGATGCGCTCGCCAATCTCTCCCTC
AAGAACTGGCCGGGCTTCACGGAGACACAGCGGCAGGCGGTCTGCTCCTG
CCTCACCCAGAACTTCGTGGCGCACTGGCGCGCTGTTTCTTCCTTCTCCT
CCCCGCCCCGCATCGCCGCCCTGGCTTCCGCCGCCGTGTCTTCTTCTGCT
GCTACCGGCGGCGGCGGCGGAGGAGGAGGGGCAGCCGAGCGCAAGGTCCT
TGCATCGGCGACGCGTGGGCTCGCTTGCGCGGTCGGCAAGAGCGGGGTGA
CCGCGGT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig67:12657..13463-

>mRNA_L-elsbetiae_contig67.15437.1 ID=mRNA_L-elsbetiae_contig67.15437.1|Name=mRNA_L-elsbetiae_contig67.15437.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=870bp|location=Sequence derived from alignment at L-elsbetiae_contig67:12657..13463- (Laminarionema elsbetiae ELsaHSoW15)
TCGCCGTCGGATAGGCGTGATTGTGCCAGGGCGCTGGCGCAGCTCCTCTA
CGAGAACGGCGAGCGCCTCGGCACGCGGTTCGACGACGTGCTTCCACCGC
TGCTCGGCCTGGCGGCACCGTCGGCCGTTGATCTAGAGACGAATCGCCGT
CGGATAGGCGTGATTGTGCCAGGGCGCTGGCGCAGCTCCTCTACGAGAAC
GGCGAGCGCCTCGGCACGCGGTTCGACGACGTGCTTCCACCGCTGCTCGG
CCTGGCGGCACCGTCGGCCGTTGATCTAGAGACGAAGCACGCCGCGCTGG
ATGCGCTCGCCAATCTCTCCCTCAAGAACTGGCCGGGCTTCACGGAGACA
CAGCGGCAGGCGGTCTGCTCCTGCCTCACCCAGAACTTCGTGGCGCACTG
GCGCGCTGTTTCTTCCTTCTCCTCCCCGCCCCGCATCGCCGCCCTGGCTT
CCGCCGCCGTGTCTTCTTCTGCTGCTACCGGCGGCGGCGGCGGAGGAGGA
GGGGCAGCCGAGCGCAAGGTCCTTGCATCGGCGACGCGTGGGCTCGCTTG
CGCGGTCGGCAAGAGCGGGGTGACCGCGGCACGCCGCGCTGGATGCGCTC
GCCAATCTCTCCCTCAAGAACTGGCCGGGCTTCACGGAGACACAGCGGCA
GGCGGTCTGCTCCTGCCTCACCCAGAACTTCGTGGCGCACTGGCGCGCTG
TTTCTTCCTTCTCCTCCCCGCCCCGCATCGCCGCCCTGGCTTCCGCCGCC
GTGTCTTCTTCTGCTGCTACCGGCGGCGGCGGCGGAGGAGGAGGGGCAGC
CGAGCGCAAGGTCCTTGCATCGGCGACGCGTGGGCTCGCTTGCGCGGTCG
GCAAGAGCGGGGTGACCGCG
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