mRNA_L-elsbetiae_contig67.15436.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig67.15436.1
Unique NamemRNA_L-elsbetiae_contig67.15436.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig67.15436.1 vs. uniprot
Match: D7FH12_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH12_ECTSI)

HSP 1 Score: 138 bits (348), Expect = 2.920e-35
Identity = 88/129 (68.22%), Postives = 93/129 (72.09%), Query Frame = 1 
Query:   31 VEESLGDLLRALAGLAMDIVAEPSARIAASQALTAAFSTKEPIAAIDSLLLDFRCAVPPSSPCPS-GGWGGGARTPPLPSSPASAALAAARGSSGISTTGAGIGGWSPLPLRPGSADDRGNRFVAEGAR 414
            VEESLGDLLR LA L +D+ AEPSARIAASQALTA FSTKEPIAAIDS LL FRC+     P    G WGG   TPP PSSPASAA    R  +G +   AG G WSPLPLRPGSADDRGNRFV   AR
Sbjct:  526 VEESLGDLLRELARLMVDVAAEPSARIAASQALTAVFSTKEPIAAIDSFLLSFRCSAAGGLPSSCRGSWGGSRATPP-PSSPASAA----RRGNGANAV-AGSGAWSPLPLRPGSADDRGNRFVGGVAR 648
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BLAST of mRNA_L-elsbetiae_contig67.15436.1 vs. uniprot
Match: A0A6H5K415_9PHAE (DUF4042 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K415_9PHAE)

HSP 1 Score: 117 bits (292), Expect = 1.020e-27
Identity = 87/176 (49.43%), Postives = 95/176 (53.98%), Query Frame = 1 
Query:   25 AGVEESLGDLLRALAGLAMDIVAEPSARIA---------------------------------------------ASQALTAAFSTKEPIAAIDSLLLDFRCAVPPSSPCPSGG-WGGGARTPPLPSSPASAALAAARGSSGISTTGAGIGGWSPLPLRPGSADDRGNRFVAEGAR 414
            +GVEESLGDLLR LA L +D+ AEPSARIA                                             +SQALTA FSTKEP+AAIDS LL FRC+     P   GG WGG   TPP  SSPASAA    R  +G +   AG G WSPLPLRPGSADDRGNRFV   AR
Sbjct:  512 SGVEESLGDLLRELARLMVDVAAEPSARIAGASFFHDXXXXXXXXXNLLYFCLALLCSVLVQSWPLDRASYRSVSSSQALTAVFSTKEPVAAIDSFLLSFRCSAAGGLPSSCGGSWGGSRATPPS-SSPASAA----RRGNGANAV-AGPGAWSPLPLRPGSADDRGNRFVGGVAR 681
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig67.15436.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FH12_ECTSI2.920e-3568.22Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K415_9PHAE1.020e-2749.43DUF4042 domain-containing protein n=1 Tax=Ectocarp... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig67contigL-elsbetiae_contig67:10455..11328 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionArmadillo-like helical
Ec32 orthologEc-26_003080.1
Exons2
Model size418
Cds size414
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816741.6503057-CDS-L-elsbetiae_contig67:10456..107551622816741.6503057-CDS-L-elsbetiae_contig67:10456..10755Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig67 10457..10755 -
1691683779.170104-CDS-L-elsbetiae_contig67:10456..107551691683779.170104-CDS-L-elsbetiae_contig67:10456..10755Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig67 10457..10755 -
1622816741.6699271-CDS-L-elsbetiae_contig67:11213..113281622816741.6699271-CDS-L-elsbetiae_contig67:11213..11328Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig67 11214..11328 -
1691683779.1809444-CDS-L-elsbetiae_contig67:11213..113281691683779.1809444-CDS-L-elsbetiae_contig67:11213..11328Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig67 11214..11328 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig67.15436.1prot_L-elsbetiae_contig67.15436.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig67 10457..11328 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig67.15436.1

>prot_L-elsbetiae_contig67.15436.1 ID=prot_L-elsbetiae_contig67.15436.1|Name=mRNA_L-elsbetiae_contig67.15436.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=138bp
GGGGPGGRAGVEESLGDLLRALAGLAMDIVAEPSARIAASQALTAAFSTK
EPIAAIDSLLLDFRCAVPPSSPCPSGGWGGGARTPPLPSSPASAALAAAR
GSSGISTTGAGIGGWSPLPLRPGSADDRGNRFVAEGAR
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mRNA from alignment at L-elsbetiae_contig67:10455..11328-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig67.15436.1 ID=mRNA_L-elsbetiae_contig67.15436.1|Name=mRNA_L-elsbetiae_contig67.15436.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=874bp|location=Sequence derived from alignment at L-elsbetiae_contig67:10455..11328- (Laminarionema elsbetiae ELsaHSoW15)
GGCGGCGGTGGTCCGGGCGGCCGGGCCGGCGTGGAAGAGTCGCTGGGAGA
CCTGCTGCGGGCGCTCGCGGGGCTGGCGATGGATATTGTGGCGGAGCCCA
GTGCCAGGATCGCCGGTGCGTGCTATACGGCAGAGGCAGCTACATAGCTT
ATACGTAGGCTCCGCCCGGATGGATCCTGTCTTTTGCCGCTTTTGCCTCA
GCGTTTTTTTTTTAGTGGCCCCACCGACAAGAGGCTTGCTGCATACCGCA
CAGCACACAGGTGCCGAGACTTCCAACGACGCTGTTGGAAAAAGCGCACA
TGTATGTTGCTGTTCGTCGAGCGCCGAGAGCACGGGGTGCGTGGGTGCGT
TACAGCTTTTGAAAAAAAAACAGTCACCTCTAGTCCTGCCTGTTCTCCTC
GCGCCTGTACTGCTGTACCGACAAAAGCGGGTCACGCGATTCACGTTCAC
GACCGCTTGCCCCCCTCCCTCTGGTAGTTTCCCGACCCCTGCCTTTTTCC
GGCCAATTTTTTTTGTGAACCATCGATTTGTGCTCGGCCTCCTCGTCTTC
GCTCCCCCCCCCCCCCCGACCAGCCTCGCAAGCGCTGACCGCGGCGTTTT
CTACAAAGGAGCCCATCGCCGCCATCGACTCCCTCCTGCTGGACTTCCGG
TGCGCGGTCCCCCCTTCTTCCCCCTGCCCGTCCGGCGGGTGGGGCGGCGG
AGCCAGGACGCCGCCGCTGCCGTCGTCGCCGGCGTCGGCCGCCCTCGCCG
CCGCTCGCGGTAGCAGCGGCATCTCAACGACGGGAGCGGGAATAGGAGGC
TGGTCCCCCCTCCCCCTTCGGCCGGGCAGTGCGGACGACCGGGGGAATAG
GTTCGTCGCGGAGGGTGCCAGGAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig67:10455..11328-

>mRNA_L-elsbetiae_contig67.15436.1 ID=mRNA_L-elsbetiae_contig67.15436.1|Name=mRNA_L-elsbetiae_contig67.15436.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=828bp|location=Sequence derived from alignment at L-elsbetiae_contig67:10455..11328- (Laminarionema elsbetiae ELsaHSoW15)
GGCGGCGGTGGTCCGGGCGGCCGGGCCGGCGTGGAAGAGTCGCTGGGAGA
CCTGCTGCGGGCGCTCGCGGGGCTGGCGATGGATATTGTGGCGGAGCCCA
GTGCCAGGATCGCCGGGCGGCGGTGGTCCGGGCGGCCGGGCCGGCGTGGA
AGAGTCGCTGGGAGACCTGCTGCGGGCGCTCGCGGGGCTGGCGATGGATA
TTGTGGCGGAGCCCAGTGCCAGGATCGCCGCCTCGCAAGCGCTGACCGCG
GCGTTTTCTACAAAGGAGCCCATCGCCGCCATCGACTCCCTCCTGCTGGA
CTTCCGGTGCGCGGTCCCCCCTTCTTCCCCCTGCCCGTCCGGCGGGTGGG
GCGGCGGAGCCAGGACGCCGCCGCTGCCGTCGTCGCCGGCGTCGGCCGCC
CTCGCCGCCGCTCGCGGTAGCAGCGGCATCTCAACGACGGGAGCGGGAAT
AGGAGGCTGGTCCCCCCTCCCCCTTCGGCCGGGCAGTGCGGACGACCGGG
GGAATAGGTTCGTCGCGGAGGGTGCCAGGCCTCGCAAGCGCTGACCGCGG
CGTTTTCTACAAAGGAGCCCATCGCCGCCATCGACTCCCTCCTGCTGGAC
TTCCGGTGCGCGGTCCCCCCTTCTTCCCCCTGCCCGTCCGGCGGGTGGGG
CGGCGGAGCCAGGACGCCGCCGCTGCCGTCGTCGCCGGCGTCGGCCGCCC
TCGCCGCCGCTCGCGGTAGCAGCGGCATCTCAACGACGGGAGCGGGAATA
GGAGGCTGGTCCCCCCTCCCCCTTCGGCCGGGCAGTGCGGACGACCGGGG
GAATAGGTTCGTCGCGGAGGGTGCCAGG
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