mRNA_L-elsbetiae_contig67.15434.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig67.15434.1
Unique NamemRNA_L-elsbetiae_contig67.15434.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig67.15434.1 vs. uniprot
Match: A0A6H5L807_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L807_9PHAE)

HSP 1 Score: 124 bits (312), Expect = 2.530e-30
Identity = 63/94 (67.02%), Postives = 71/94 (75.53%), Query Frame = -3 
Query:    3 ERRRQGAMAASEVAARKKARTGDLKFGTFSVCTLAYKGKRPIGHQPMTAMQICSETGCDVVGPQETRRAGQGCITQGEYVIMWSGAR-GTKDKK 281
            +R R    AA + AA+KKAR GDL FGTF+V TLAY G+ PIGH  MT MQICS TGCDV+G QETRRAGQG I    YVI+WSGAR GTKDK+
Sbjct:   63 DRERHETAAAVKAAAKKKAREGDLSFGTFNVRTLAYSGRNPIGHNVMTVMQICSATGCDVIGLQETRRAGQGSIAHDGYVIIWSGARAGTKDKR 156
[Close]
BLAST of mRNA_L-elsbetiae_contig67.15434.1 vs. uniprot
Match: A0A6H5L660_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L660_9PHAE)

HSP 1 Score: 122 bits (307), Expect = 4.800e-30
Identity = 62/94 (65.96%), Postives = 70/94 (74.47%), Query Frame = -3 
Query:    3 ERRRQGAMAASEVAARKKARTGDLKFGTFSVCTLAYKGKRPIGHQPMTAMQICSETGCDVVGPQETRRAGQGCITQGEYVIMWSGAR-GTKDKK 281
            +R R    AA + AA+KKAR GDL FGTF+V TLAY G+ PIGH  MT MQICS TGCDV+G QETRR GQG I    YVI+WSGAR GTKDK+
Sbjct:  125 DRERHETAAAVKAAAKKKAREGDLSFGTFNVRTLAYSGRNPIGHNVMTVMQICSATGCDVIGLQETRREGQGSIAHDGYVIIWSGARAGTKDKR 218
[Close]
BLAST of mRNA_L-elsbetiae_contig67.15434.1 vs. uniprot
Match: A0A6H5JMB4_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMB4_9PHAE)

HSP 1 Score: 124 bits (312), Expect = 1.360e-29
Identity = 63/94 (67.02%), Postives = 71/94 (75.53%), Query Frame = -3 
Query:    3 ERRRQGAMAASEVAARKKARTGDLKFGTFSVCTLAYKGKRPIGHQPMTAMQICSETGCDVVGPQETRRAGQGCITQGEYVIMWSGAR-GTKDKK 281
            +R R    AA + AA+KKAR GDL FGTF+V TLAY G+ PIGH  MT MQICS TGCDV+G QETRRAGQG I    YVI+WSGAR GTKDK+
Sbjct:   63 DRERHETAAAVKAAAKKKAREGDLSFGTFNVRTLAYSGRNPIGHNVMTVMQICSATGCDVIGLQETRRAGQGSIAHDGYVIIWSGARAGTKDKR 156
[Close]
BLAST of mRNA_L-elsbetiae_contig67.15434.1 vs. uniprot
Match: A0A6H5K1H7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1H7_9PHAE)

HSP 1 Score: 124 bits (312), Expect = 1.790e-29
Identity = 61/86 (70.93%), Postives = 68/86 (79.07%), Query Frame = -3 
Query:    3 AASEVAARKKARTGDLKFGTFSVCTLAYKGKRPIGHQPMTAMQICSETGCDVVGPQETRRAGQGCITQGEYVIMWSGAR-GTKDKK 257
            AA +VA +KKAR GDL FGTF+VCTLAY G+ PIGH  MT MQICS TGCDV+G QETRR GQG I    YVI+WSGAR GTKDK+
Sbjct:  642 AAVKVAGKKKAREGDLSFGTFNVCTLAYSGRNPIGHNVMTVMQICSATGCDVIGLQETRREGQGSIAHDGYVIIWSGARAGTKDKR 727
[Close]
BLAST of mRNA_L-elsbetiae_contig67.15434.1 vs. uniprot
Match: A0A6H5JQH5_9PHAE (Reverse transcriptase domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQH5_9PHAE)

HSP 1 Score: 123 bits (308), Expect = 6.270e-29
Identity = 62/95 (65.26%), Postives = 71/95 (74.74%), Query Frame = -3 
Query:    3 AERRRQGAMAASEVAARKKARTGDLKFGTFSVCTLAYKGKRPIGHQPMTAMQICSETGCDVVGPQETRRAGQGCITQGEYVIMWSGAR-GTKDKK 284
            A+R RQ   A  +  A+KKAR GDL FGTF+V TLAY G+ PIGH  MT MQIC+ T CDV+G QETRRAGQG IT   YVI+WSGAR GTKDK+
Sbjct:   66 ADRERQEIAAGVKATAKKKAREGDLSFGTFNVRTLAYSGRNPIGHNVMTVMQICAATDCDVIGLQETRRAGQGAITHDGYVIIWSGARAGTKDKR 160
[Close]
BLAST of mRNA_L-elsbetiae_contig67.15434.1 vs. uniprot
Match: A0A6H5K3Q1_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3Q1_9PHAE)

HSP 1 Score: 122 bits (305), Expect = 1.050e-28
Identity = 61/86 (70.93%), Postives = 68/86 (79.07%), Query Frame = -3 
Query:    3 AASEVAARKKARTGDLKFGTFSVCTLAYKGKRPIGHQPMTAMQICSETGCDVVGPQETRRAGQGCITQGEYVIMWSGAR-GTKDKK 257
            AA + AA+KKAR GDL FGTF+V TLAY G+ PIGH  MT MQICS TGCDV+G QETRRAGQG I    YVI+WSGAR GTKDK+
Sbjct:  160 AAVKAAAKKKAREGDLSFGTFNVRTLAYSGRNPIGHNVMTVMQICSATGCDVIGLQETRRAGQGSIAHDGYVIIWSGARAGTKDKR 245
[Close]
BLAST of mRNA_L-elsbetiae_contig67.15434.1 vs. uniprot
Match: A0A6H5KV75_9PHAE (Endo/exonuclease/phosphatase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KV75_9PHAE)

HSP 1 Score: 120 bits (301), Expect = 1.530e-28
Identity = 62/95 (65.26%), Postives = 70/95 (73.68%), Query Frame = -3 
Query:    3 AERRRQGAMAASEVAARKKARTGDLKFGTFSVCTLAYKGKRPIGHQPMTAMQICSETGCDVVGPQETRRAGQGCITQGEYVIMWSGAR-GTKDKK 284
            A R R    AA + AA++KAR GDL FGTF+V TLA  G+ PIGH  MT MQICS TGCDV+G QETRRAGQG I    YVI+WSGAR GTKDK+
Sbjct:   57 AARERHETAAAVKAAAKRKAREGDLSFGTFNVRTLACSGRNPIGHNVMTVMQICSATGCDVIGLQETRRAGQGSIAHDGYVIIWSGARAGTKDKR 151
[Close]
BLAST of mRNA_L-elsbetiae_contig67.15434.1 vs. uniprot
Match: A0A6H5JGX2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGX2_9PHAE)

HSP 1 Score: 121 bits (303), Expect = 2.780e-28
Identity = 61/94 (64.89%), Postives = 70/94 (74.47%), Query Frame = -3 
Query:    3 ERRRQGAMAASEVAARKKARTGDLKFGTFSVCTLAYKGKRPIGHQPMTAMQICSETGCDVVGPQETRRAGQGCITQGEYVIMWSGAR-GTKDKK 281
            +R R    AA + AA+KKAR GDL FG F+V TLAY G++PIGH  MT MQICS TGCDV+G QETRR GQG I    YVI+WSGAR GTKDK+
Sbjct:   36 DRERHETAAAVKAAAKKKAREGDLSFGAFNVRTLAYSGRKPIGHNVMTIMQICSATGCDVIGLQETRREGQGSIAHDGYVIIWSGARAGTKDKR 129
[Close]
BLAST of mRNA_L-elsbetiae_contig67.15434.1 vs. uniprot
Match: A0A6H5KRJ3_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRJ3_9PHAE)

HSP 1 Score: 120 bits (302), Expect = 3.950e-28
Identity = 65/104 (62.50%), Postives = 73/104 (70.19%), Query Frame = -3 
Query:    3 WS---P*CKAERRRQGAMAASEVAARKKARTGDLKFGTFSVCTLAYKGKRPIGHQPMTAMQICSETGCDVVGPQETRRAGQGCITQGEYVIMWSGAR-GTKDKK 302
            WS   P  +A+R R    AA + AA+KKAR GDL FGTF+V TLAY GK   GH  MT MQIC  T CDV+G QETRRAGQG IT   YVI+WSGAR GTKDK+
Sbjct:   59 WSKAHPQREADRERHETAAAVKAAAKKKAREGDLSFGTFNVRTLAYSGKNQFGHNVMTVMQICPATDCDVIGLQETRRAGQGAITHDGYVIIWSGARAGTKDKR 162
[Close]
BLAST of mRNA_L-elsbetiae_contig67.15434.1 vs. uniprot
Match: A0A6H5K5A7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5A7_9PHAE)

HSP 1 Score: 120 bits (300), Expect = 7.440e-28
Identity = 62/95 (65.26%), Postives = 70/95 (73.68%), Query Frame = -3 
Query:    3 AERRRQGAMAASEVAARKKARTGDLKFGTFSVCTLAYKGKRPIGHQPMTAMQICSETGCDVVGPQETRRAGQGCITQGEYVIMWSGAR-GTKDKK 284
            A+R R    AA + AA+KKAR GDL FGTF+V TLAY G+ PIGH  MT MQI S TGCDV+G QETRR GQG I    YVI+WSGAR GTKDK+
Sbjct:  109 ADRERHETAAAVKAAAKKKAREGDLSFGTFNVRTLAYSGRNPIGHNVMTVMQIWSATGCDVIGLQETRREGQGSIAHDGYVIIWSGARAGTKDKR 203
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig67.15434.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L807_9PHAE2.530e-3067.02Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L660_9PHAE4.800e-3065.96Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JMB4_9PHAE1.360e-2967.02Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5K1H7_9PHAE1.790e-2970.93Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JQH5_9PHAE6.270e-2965.26Reverse transcriptase domain-containing protein n=... [more]
A0A6H5K3Q1_9PHAE1.050e-2870.93Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KV75_9PHAE1.530e-2865.26Endo/exonuclease/phosphatase domain-containing pro... [more]
A0A6H5JGX2_9PHAE2.780e-2864.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KRJ3_9PHAE3.950e-2862.50Reverse transcriptase domain-containing protein (F... [more]
A0A6H5K5A7_9PHAE7.440e-2865.26Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig67contigL-elsbetiae_contig67:3661..4461 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size604
Cds size417
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig67.15434.1prot_L-elsbetiae_contig67.15434.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig67 3699..4312 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816741.3179994-UTR-L-elsbetiae_contig67:3660..36981622816741.3179994-UTR-L-elsbetiae_contig67:3660..3698Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig67 3661..3698 -
1691683778.9716415-UTR-L-elsbetiae_contig67:3660..36981691683778.9716415-UTR-L-elsbetiae_contig67:3660..3698Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig67 3661..3698 -
1622816741.3536386-UTR-L-elsbetiae_contig67:4312..44611622816741.3536386-UTR-L-elsbetiae_contig67:4312..4461Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig67 4313..4461 -
1691683779.0044537-UTR-L-elsbetiae_contig67:4312..44611691683779.0044537-UTR-L-elsbetiae_contig67:4312..4461Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig67 4313..4461 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816741.3295212-CDS-L-elsbetiae_contig67:3698..39751622816741.3295212-CDS-L-elsbetiae_contig67:3698..3975Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig67 3699..3975 -
1691683778.9829435-CDS-L-elsbetiae_contig67:3698..39751691683778.9829435-CDS-L-elsbetiae_contig67:3698..3975Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig67 3699..3975 -
1622816741.3401515-CDS-L-elsbetiae_contig67:4172..43121622816741.3401515-CDS-L-elsbetiae_contig67:4172..4312Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig67 4173..4312 -
1691683778.9947567-CDS-L-elsbetiae_contig67:4172..43121691683778.9947567-CDS-L-elsbetiae_contig67:4172..4312Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig67 4173..4312 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig67.15434.1

>prot_L-elsbetiae_contig67.15434.1 ID=prot_L-elsbetiae_contig67.15434.1|Name=mRNA_L-elsbetiae_contig67.15434.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=139bp
MADWPLALVGERANAERAELQVARACLLPCGYLRRRHGPLSPSFRLALRA
PRLRRRWLVSSAVFRRQLLPRGPGPTAHLVSATESTTSPARISTLARLHV
CTPYPFALVWPGLPAKDSLGRVRPRPGNSRKRRCLDGL*
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mRNA from alignment at L-elsbetiae_contig67:3661..4461-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig67.15434.1 ID=mRNA_L-elsbetiae_contig67.15434.1|Name=mRNA_L-elsbetiae_contig67.15434.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=801bp|location=Sequence derived from alignment at L-elsbetiae_contig67:3661..4461- (Laminarionema elsbetiae ELsaHSoW15)
CCCTTCTTGTCCTTGGTCCCGCGAGCACCACTCCACATGATCACGTACTC
CCCCTGGGTGATGCACCCCTGACCTGCGCGCCGGGTCTCCTGGGGTCCGA
CCACGTCACATCCAGTCTCGGAACATATCTGCATGGCTGTCATCGGCTGA
TGGCCGATTGGCCGCTTGCCCTTGTAGGCGAGCGTGCAAACGCTGAACGT
GCCGAACTTCAGGTCGCCCGTGCGTGCCTTCTTCCTTGCGGCTACCTCCG
ACGCCGCCATGGCCCCCTGTCTCCTTCGTTCCGCCTTGCGTAAGTGGCTG
GTTTTGCTTTCGATTTTTCCGCGCAGCTATTTTCTTCGCTCCTATTCATC
TCAGCCTTGCTCGGCTGCTGCCCGTGTTGATAGGGATGGGGTGCTGCATT
CCCCACCCGCATCCGCGGCCCTCTCCCTCCCTCCTGAGACGTTTCTGCTT
ACTGTCATCGTGCTTGCGCATCTATCTACTCCTCAGACTACGGGCTCCAC
GGCTTCGGCGGCGGTGGCTTGTCTCAAGTGCAGTCTTCCGCAGGCAATTG
CTGCCGCGGGGGCCAGGCCCAACTGCACATCTCGTCTCTGCCACCGAAAG
CACAACCTCGCCAGCGCGCATCAGCACGCTTGCAAGGTTGCACGTGTGCA
CCCCCTACCCTTTTGCTCTGGTGTGGCCTGGCTTGCCCGCGAAGGACTCA
CTAGGTCGAGTTCGGCCCCGACCGGGGAACAGCCGAAAGAGGAGGTGTCT
AGATGGATTGTAAGGACCCAACTGCAACACCGACGACAACAACCACACAG
G
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Coding sequence (CDS) from alignment at L-elsbetiae_contig67:3661..4461-

>mRNA_L-elsbetiae_contig67.15434.1 ID=mRNA_L-elsbetiae_contig67.15434.1|Name=mRNA_L-elsbetiae_contig67.15434.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=834bp|location=Sequence derived from alignment at L-elsbetiae_contig67:3661..4461- (Laminarionema elsbetiae ELsaHSoW15)
ATGGCCGATTGGCCGCTTGCCCTTGTAGGCGAGCGTGCAAACGCTGAACG
TGCCGAACTTCAGGTCGCCCGTGCGTGCCTTCTTCCTTGCGGCTACCTCC
GACGCCGCCATGGCCCCCTGTCTCCTTCGTTCCGCCTTGCATGGCCGATT
GGCCGCTTGCCCTTGTAGGCGAGCGTGCAAACGCTGAACGTGCCGAACTT
CAGGTCGCCCGTGCGTGCCTTCTTCCTTGCGGCTACCTCCGACGCCGCCA
TGGCCCCCTGTCTCCTTCGTTCCGCCTTGCACTACGGGCTCCACGGCTTC
GGCGGCGGTGGCTTGTCTCAAGTGCAGTCTTCCGCAGGCAATTGCTGCCG
CGGGGGCCAGGCCCAACTGCACATCTCGTCTCTGCCACCGAAAGCACAAC
CTCGCCAGCGCGCATCAGCACGCTTGCAAGGTTGCACGTGTGCACCCCCT
ACCCTTTTGCTCTGGTGTGGCCTGGCTTGCCCGCGAAGGACTCACTAGGT
CGAGTTCGGCCCCGACCGGGGAACAGCCGAAAGAGGAGGTGTCTAGATGG
ATTGTAAACTACGGGCTCCACGGCTTCGGCGGCGGTGGCTTGTCTCAAGT
GCAGTCTTCCGCAGGCAATTGCTGCCGCGGGGGCCAGGCCCAACTGCACA
TCTCGTCTCTGCCACCGAAAGCACAACCTCGCCAGCGCGCATCAGCACGC
TTGCAAGGTTGCACGTGTGCACCCCCTACCCTTTTGCTCTGGTGTGGCCT
GGCTTGCCCGCGAAGGACTCACTAGGTCGAGTTCGGCCCCGACCGGGGAA
CAGCCGAAAGAGGAGGTGTCTAGATGGATTGTAA
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