mRNA_L-elsbetiae_contig67.15433.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig67.15433.1
Unique NamemRNA_L-elsbetiae_contig67.15433.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig67.15433.1 vs. uniprot
Match: D8LEZ6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEZ6_ECTSI)

HSP 1 Score: 96.3 bits (238), Expect = 2.930e-17
Identity = 38/52 (73.08%), Postives = 42/52 (80.77%), Query Frame = 1 
Query:  739 LHHRVRLPGNTTRWLQYFRPPWNEPTDDIKNYFGEKIGLYFLWLGHYTTWCV 894
            LH +V L     +WLQYFRPPW EP DD+KNYFGEKIGLYFLWLGHYTTW +
Sbjct:  178 LHDKVELRALQRKWLQYFRPPWKEPIDDVKNYFGEKIGLYFLWLGHYTTWLI 229
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BLAST of mRNA_L-elsbetiae_contig67.15433.1 vs. uniprot
Match: A0A812UTJ6_SYMMI (Ano4 protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812UTJ6_SYMMI)

HSP 1 Score: 85.1 bits (209), Expect = 9.550e-15
Identity = 34/50 (68.00%), Postives = 40/50 (80.00%), Query Frame = 1 
Query:  739 LHHRVRLPGNTTRWLQYFRPPWNEPTDDIKNYFGEKIGLYFLWLGHYTTW 888
            LH  V L     +WLQ+ + PWN+PTD+IKNYFGEKIGLYFLWLGHYT+W
Sbjct:   74 LHDHVELHTLEEKWLQFIQLPWNQPTDEIKNYFGEKIGLYFLWLGHYTSW 123
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BLAST of mRNA_L-elsbetiae_contig67.15433.1 vs. uniprot
Match: A0A7S3GXI7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GXI7_9STRA)

HSP 1 Score: 76.3 bits (186), Expect = 2.410e-13
Identity = 32/54 (59.26%), Postives = 37/54 (68.52%), Query Frame = 1 
Query:  733 MLLHHRVRLPGNTTRWLQYFRPPWNEPTDDIKNYFGEKIGLYFLWLGHYTTWCV 894
            M LH  V L     +WL +F  PWN+P D IK+YFGEKIGLYF WLG YT+W V
Sbjct:   23 MPLHDMVELRALEAQWLTFFDMPWNQPVDQIKDYFGEKIGLYFKWLGMYTSWLV 76
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BLAST of mRNA_L-elsbetiae_contig67.15433.1 vs. uniprot
Match: A0A7S2V1K8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V1K8_9STRA)

HSP 1 Score: 76.3 bits (186), Expect = 2.690e-13
Identity = 31/52 (59.62%), Postives = 37/52 (71.15%), Query Frame = 1 
Query:  739 LHHRVRLPGNTTRWLQYFRPPWNEPTDDIKNYFGEKIGLYFLWLGHYTTWCV 894
            LH  + L     +WL     PW++P DDIKNYFGEKIGLYF+WLGHYTTW +
Sbjct:   23 LHDWMELLELEKKWLTLTDMPWHQPVDDIKNYFGEKIGLYFVWLGHYTTWLI 74
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BLAST of mRNA_L-elsbetiae_contig67.15433.1 vs. uniprot
Match: A0A6V2ZSX1_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V2ZSX1_HETAK)

HSP 1 Score: 79.3 bits (194), Expect = 8.000e-12
Identity = 32/52 (61.54%), Postives = 39/52 (75.00%), Query Frame = 1 
Query:  739 LHHRVRLPGNTTRWLQYFRPPWNEPTDDIKNYFGEKIGLYFLWLGHYTTWCV 894
            LH    L G   RWL+  + PW +PTDDIK+YFGEKIGLY++WLGHYTTW +
Sbjct:  275 LHDYDELVGLEKRWLKLMQWPWQQPTDDIKDYFGEKIGLYYVWLGHYTTWLM 326
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BLAST of mRNA_L-elsbetiae_contig67.15433.1 vs. uniprot
Match: A0A6G0XYM5_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XYM5_9STRA)

HSP 1 Score: 77.4 bits (189), Expect = 3.060e-11
Identity = 28/53 (52.83%), Postives = 39/53 (73.58%), Query Frame = 1 
Query:  739 LHHRVRLPGNTTRWLQYFRPPWNEPTDDIKNYFGEKIGLYFLWLGHYTTWCVG 897
            LH+ V     T++W+ +   PW +P  DIK+Y+GEK+GLYF+WLGHYTTW +G
Sbjct:  218 LHNEVEQEALTSKWINWSSLPWQQPYSDIKDYYGEKVGLYFVWLGHYTTWLIG 270
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BLAST of mRNA_L-elsbetiae_contig67.15433.1 vs. uniprot
Match: A0A835ZD27_9STRA (Calcium-activated chloride channel-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZD27_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 1.570e-10
Identity = 29/52 (55.77%), Postives = 37/52 (71.15%), Query Frame = 1 
Query:  739 LHHRVRLPGNTTRWLQYFRPPWNEPTDDIKNYFGEKIGLYFLWLGHYTTWCV 894
            LH +V L      W +Y + PW +P  D+K+Y+GEKIGLYFLWLGHYTTW +
Sbjct:  181 LHDKVELRLLQRAWFRYVQAPWAQPIQDVKDYYGEKIGLYFLWLGHYTTWLL 232
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BLAST of mRNA_L-elsbetiae_contig67.15433.1 vs. uniprot
Match: A0A2D4C6Y9_PYTIN (cGMP-dependent protein kinase n=2 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C6Y9_PYTIN)

HSP 1 Score: 75.5 bits (184), Expect = 1.850e-10
Identity = 29/60 (48.33%), Postives = 38/60 (63.33%), Query Frame = 1 
Query:  739 LHHRVRLPGNTTRWLQYFRPPWNEPTDDIKNYFGEKIGLYFLWLGHYTTWCVGKWASECN 918
            LH    L     +W+ +   PW++P  DIK+YFGEK+GLYF WLGHYTTW +   + E N
Sbjct: 2149 LHEYEELSALKPKWINWSAAPWSQPIHDIKDYFGEKVGLYFAWLGHYTTWLIAPMSDEFN 2208
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BLAST of mRNA_L-elsbetiae_contig67.15433.1 vs. uniprot
Match: A0A024UWI9_9STRA (Anoct_dimer domain-containing protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UWI9_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 4.930e-10
Identity = 27/53 (50.94%), Postives = 36/53 (67.92%), Query Frame = 1 
Query:  739 LHHRVRLPGNTTRWLQYFRPPWNEPTDDIKNYFGEKIGLYFLWLGHYTTWCVG 897
            LH        T +W+ +   PW +P  DIK+Y+GEK+GLYF+WLGHYTTW +G
Sbjct:  204 LHDEEEQEAVTKKWINWSSLPWQQPFSDIKDYYGEKVGLYFVWLGHYTTWLIG 256
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BLAST of mRNA_L-elsbetiae_contig67.15433.1 vs. uniprot
Match: A0A1V9ZYI8_9STRA (Anoct_dimer domain-containing protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZYI8_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 4.980e-10
Identity = 30/64 (46.88%), Postives = 40/64 (62.50%), Query Frame = 1 
Query:  703 LYINAPLTP*MLLHHRVRLPGNTTRWLQYFRPPWNEPTDDIKNYFGEKIGLYFLWLGHYTTWCV 894
            L +N  L     LH          +W+ +  PPW +P +DIK+Y+GEKIGLYF+WLGHYTTW +
Sbjct:  183 LEVNNCLVTAFALHDFEERDRLNEKWINWSSPPWKQPYNDIKDYYGEKIGLYFVWLGHYTTWLI 246
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig67.15433.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LEZ6_ECTSI2.930e-1773.08Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A812UTJ6_SYMMI9.550e-1568.00Ano4 protein n=1 Tax=Symbiodinium microadriaticum ... [more]
A0A7S3GXI7_9STRA2.410e-1359.26Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A7S2V1K8_9STRA2.690e-1359.62Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A6V2ZSX1_HETAK8.000e-1261.54Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A6G0XYM5_9STRA3.060e-1152.83Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A835ZD27_9STRA1.570e-1055.77Calcium-activated chloride channel-domain-containi... [more]
A0A2D4C6Y9_PYTIN1.850e-1048.33cGMP-dependent protein kinase n=2 Tax=Pythium insi... [more]
A0A024UWI9_9STRA4.930e-1050.94Anoct_dimer domain-containing protein n=2 Tax=Apha... [more]
A0A1V9ZYI8_9STRA4.980e-1046.88Anoct_dimer domain-containing protein n=1 Tax=Thra... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig67contigL-elsbetiae_contig67:124..1729 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score97.1
Seed ortholog evalue4.5e-18
Seed eggNOG ortholog2880.D8LEZ6
KEGG koko:K19327,ko:K19480,ko:K19497,ko:K19501
KEGG TC1.A.17.1,1.A.17.1.2,1.A.17.1.21,1.A.17.1.3
KEGG Pathwayko04740,map04740
Hectar predicted targeting categoryother localisation
EggNOG free text desc.intracellular chloride channel activity
EggNOG OGsKOG2514@1,KOG2514@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04040
Exons1
Model size1606
Cds size267
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig67.15433.1prot_L-elsbetiae_contig67.15433.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig67 856..1122 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816741.5122247-UTR-L-elsbetiae_contig67:123..8551622816741.5122247-UTR-L-elsbetiae_contig67:123..855Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig67 124..855 +
1691683779.0851967-UTR-L-elsbetiae_contig67:123..8551691683779.0851967-UTR-L-elsbetiae_contig67:123..855Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig67 124..855 +
1622816741.5391135-UTR-L-elsbetiae_contig67:1122..17291622816741.5391135-UTR-L-elsbetiae_contig67:1122..1729Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig67 1123..1729 +
1691683779.116322-UTR-L-elsbetiae_contig67:1122..17291691683779.116322-UTR-L-elsbetiae_contig67:1122..1729Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig67 1123..1729 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816741.5277758-CDS-L-elsbetiae_contig67:855..11221622816741.5277758-CDS-L-elsbetiae_contig67:855..1122Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig67 856..1122 +
1691683779.0994682-CDS-L-elsbetiae_contig67:855..11221691683779.0994682-CDS-L-elsbetiae_contig67:855..1122Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig67 856..1122 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig67.15433.1

>prot_L-elsbetiae_contig67.15433.1 ID=prot_L-elsbetiae_contig67.15433.1|Name=mRNA_L-elsbetiae_contig67.15433.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=89bp
MLLHHRVRLPGNTTRWLQYFRPPWNEPTDDIKNYFGEKIGLYFLWLGHYT
TWCVGKWASECNTRITGAKEGGTGCVSNVRKAQTVVAE*
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mRNA from alignment at L-elsbetiae_contig67:124..1729+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig67.15433.1 ID=mRNA_L-elsbetiae_contig67.15433.1|Name=mRNA_L-elsbetiae_contig67.15433.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1606bp|location=Sequence derived from alignment at L-elsbetiae_contig67:124..1729+ (Laminarionema elsbetiae ELsaHSoW15)
GTGCGCAACTCCTCTCAATTCTGATTTTTTGAAGAGTTATGACGTGACGA
ACATATGTCAGGATCAAGGGGCGCCCAGCTTGTATCGTCTTCTTTCTTGT
GTTGTCACGAGTGCCATATAACGCCGACCGCTCCGGGCTGGTTGTTACGC
CCCATGCTCACTGTCGTGTGGCGTTGGCGACATAGGTTGATTGTCATACA
TTTTGGGCGGTTGCGTCGATGCGCTTTGGCCGACCTCCTCCTAGTCTAGC
GCGGCGCGTAGAAAAACCTACGTTGCTGAAAAGTCGCCTGCTTGCGTGGT
GGATATTTACTGTAAAGTGGATGGGGTCCACAAACGCAGTGCGGTGCATT
GTCGTTGTGTAGGTTGCCGGACGAGCTGATTGAGGTGATGCCGTGAAACG
AGAGCAAATATGTGTACTGCCCGGTATTTGTTTAGGTGATTCTAAACTCA
GCTTCGTTGCTAGTCTTGGCCCGAGGTAGCCGGCACCTGGACGGTGTCGT
GGAACAATCCAGCGACAAGGAGGTGCCGTAAAGTGTAACCTCTTGCTTGC
TGGTCTTACCGCTCCATGGCTCTTGTGAACCCCTCGCCTGCTTTCGTGAC
CAACGCCGCCCCGCAAGCGGTGGTTGATCGGTGGTTGGCGTGGTACCATT
ACGTGTTCTGGGCCTGTTCCAAAAAGTGGATGATTTGCCGTCAGCCGCCC
CCCTCTATATAAACGCCCCACTAACTCCGTAAATGCTGCTGCACCATCGC
GTGCGTCTACCGGGCAACACAACAAGGTGGCTGCAGTATTTTCGACCTCC
TTGGAACGAGCCGACCGACGACATCAAGAACTATTTCGGCGAGAAGATAG
GGCTCTATTTTCTTTGGCTAGGGCACTACACCACTTGGTGCGTTGGCAAG
TGGGCGTCGGAGTGCAATACTCGTATAACAGGGGCAAAAGAGGGGGGTAC
AGGTTGCGTTTCGAATGTGAGAAAAGCTCAAACCGTTGTCGCTGAATAGC
CTGTGCACGCAGTAGAGCCGTACACACAGTGGCCCTCGTCATATTTGTCA
TTGACGGAGTACACCCCACTTGGCATGGCATTTGGTTTAATTTTTCGACC
TTTCTTGTATTATCTTGCGAGTGGTATGTACCCTACCTTTGGATTTTGTG
CCAGCGAGACGCAAGACCCCGTCGGGGTTCAGTTTAGTATCGCCGGGCGC
GTATGTACCATACCTTTGTTTTATTTTTGTTCTGCGGCGTCGAGTTTGCC
TTGTTTTGTGACCACGGGCCCCCAGGGATGTTTTGGACTATGTAGAGAGC
TAATGTGAGAAACGACAACACCAACTGATCTGCCAATCAGCCAGTGGGTG
AAGAGGCGAAGTTGACGAATTGCGTTTCAATCCCAAGGCTCGCCTCACTC
TACTTGGCGGGGAAGCCCCCGAAAGGTGCTGCTTGGCATGGTTGAAACAC
GTCTCTCCCAGCATTTTTTTAAAGAAAAACGGTTAATCAAAAATCGAACC
TAACCCACATTGAGACATGCTGTGCTGTTGCACCATCGAGAATCTTTTCG
CAGCAACTGCTTTCCTTCGCTGTCGCCATCTCCAACCCGGGTACCATGGG
TTTCCT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig67:124..1729+

>mRNA_L-elsbetiae_contig67.15433.1 ID=mRNA_L-elsbetiae_contig67.15433.1|Name=mRNA_L-elsbetiae_contig67.15433.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=534bp|location=Sequence derived from alignment at L-elsbetiae_contig67:124..1729+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCTGCTGCACCATCGCGTGCGTCTACCGGGCAACACAACAAGGTGGCT
GCAGTATTTTCGACCTCCTTGGAACGAGCCGACCGACGACATCAAGAACT
ATTTCGGCGAGAAGATAGGGCTCTATTTTCTTTGGCTAGGGCACTACACC
ACTTGGTGCGTTGGCAAGTGGGCGTCGGAGTGCAATACTCGTATAACAGG
GGCAAAAGAGGGGGGTACAGGTTGCGTTTCGAATGTGAGAAAAGCTCAAA
CCGTTGTCGCTGAATAGATGCTGCTGCACCATCGCGTGCGTCTACCGGGC
AACACAACAAGGTGGCTGCAGTATTTTCGACCTCCTTGGAACGAGCCGAC
CGACGACATCAAGAACTATTTCGGCGAGAAGATAGGGCTCTATTTTCTTT
GGCTAGGGCACTACACCACTTGGTGCGTTGGCAAGTGGGCGTCGGAGTGC
AATACTCGTATAACAGGGGCAAAAGAGGGGGGTACAGGTTGCGTTTCGAA
TGTGAGAAAAGCTCAAACCGTTGTCGCTGAATAG
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