|
|
Homology
BLAST of mRNA_L-elsbetiae_contig6696.15431.1 vs. uniprot
Match: A0A6H5LE49_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LE49_9PHAE) HSP 1 Score: 117 bits (292), Expect = 1.350e-26 Identity = 126/173 (72.83%), Postives = 134/173 (77.46%), Query Frame = 1
Query: 1 GVFSTKRGIRYEGGWRISRRHGEGSQEWPNGERYNGEWKNDTPDGRGTWLRRGGRYAGDLSEGVRHGKGVLKXXXXXXXXXXXXXXRMHGYGVYIWPDAQIYKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHKDVLVGWTSAEVFGSQPPQI 519
GVF +KRGIRYEG WR+SRRHGEGSQEWPNGE NDTPDGRGTWL+ XXXXXXXXXXXXXX +GVYIWPDA+IYK XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXH DVLVGWTSAEVFG+QPP++
Sbjct: 67 GVFESKRGIRYEGEWRVSRRHGEGSQEWPNGEXXXXXXXNDTPDGRGTWLKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFGVYIWPDARIYKGGWEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHNDVLVGWTSAEVFGNQPPKL 239
BLAST of mRNA_L-elsbetiae_contig6696.15431.1 vs. uniprot
Match: A0A7S4D9N0_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D9N0_HETAK) HSP 1 Score: 64.7 bits (156), Expect = 8.540e-9 Identity = 42/91 (46.15%), Postives = 54/91 (59.34%), Query Frame = 1
Query: 4 VFSTKRGI---RYEGGWRISRRHGEGSQEWPNGERYNGEWKNDTPDGRGTWLRRGGRYAGDLSEGVRHGKGVLKXXXXXXXXXXXXXXRMH 267
+F KR RYEG W S R G+G +EWPNG+RY GE+K D DG+G + R RY G+ G + G G ++ XXXXXXX R+H
Sbjct: 44 IFGRKRPNGQHRYEGQWHRSMRQGQGKEEWPNGDRYEGEYKEDLFDGKGILVSRKTRYEGEFVAGSKEGWGSMRYASGAQXXXXXXXNRLH 134
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 4 |
| Model size | 888 |
| Cds size | 888 |
| Stop | 1 |
| Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622816741.0442507-CDS-L-elsbetiae_contig6696:7074..7519 | 1622816741.0442507-CDS-L-elsbetiae_contig6696:7074..7519 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig6696 7075..7519 - |
| 1691683778.7799523-CDS-L-elsbetiae_contig6696:7074..7519 | 1691683778.7799523-CDS-L-elsbetiae_contig6696:7074..7519 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig6696 7075..7519 - |
| 1622816741.0583167-CDS-L-elsbetiae_contig6696:8225..8297 | 1622816741.0583167-CDS-L-elsbetiae_contig6696:8225..8297 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig6696 8226..8297 - |
| 1691683778.795217-CDS-L-elsbetiae_contig6696:8225..8297 | 1691683778.795217-CDS-L-elsbetiae_contig6696:8225..8297 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig6696 8226..8297 - |
| 1622816741.0709758-CDS-L-elsbetiae_contig6696:8655..8862 | 1622816741.0709758-CDS-L-elsbetiae_contig6696:8655..8862 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig6696 8656..8862 - |
| 1691683778.8075686-CDS-L-elsbetiae_contig6696:8655..8862 | 1691683778.8075686-CDS-L-elsbetiae_contig6696:8655..8862 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig6696 8656..8862 - |
| 1622816741.081876-CDS-L-elsbetiae_contig6696:9295..9459 | 1622816741.081876-CDS-L-elsbetiae_contig6696:9295..9459 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig6696 9296..9459 - |
| 1691683778.8224254-CDS-L-elsbetiae_contig6696:9295..9459 | 1691683778.8224254-CDS-L-elsbetiae_contig6696:9295..9459 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig6696 9296..9459 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig6696.15431.1 >prot_L-elsbetiae_contig6696.15431.1 ID=prot_L-elsbetiae_contig6696.15431.1|Name=mRNA_L-elsbetiae_contig6696.15431.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=296bp
GVFSTKRGIRYEGGWRISRRHGEGSQEWPNGERYNGEWKNDTPDGRGTWL
RRGGRYAGDLSEGVRHGKGVLKLRNGGEYDGQWGRGRMHGYGVYIWPDAQ
IYKGQWAAGLRHGEGTVSLPSGERYSGQWKEGKKHGGGVWRWSNGRTRRG
EWHKDVLVGWTSAEVFGSQPPQITAGSGGSGSNRTAGEGGGKSIGGSSRS
SSCASARKGAKQTGVGSSPNRASGGRSSPSGGVQKGASSDNSPKGGREGG
GGGGGRKGVAAAGGASEKISAGGNNRSRSSSPARRARQSPPNSKQ* back to topmRNA from alignment at L-elsbetiae_contig6696:7075..9459- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_L-elsbetiae_contig6696.15431.1 ID=mRNA_L-elsbetiae_contig6696.15431.1|Name=mRNA_L-elsbetiae_contig6696.15431.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2385bp|location=Sequence derived from alignment at L-elsbetiae_contig6696:7075..9459- (Laminarionema elsbetiae ELsaHSoW15)
GGCGTCTTCAGCACTAAACGAGGCATTCGGTATGAGGGTGGGTGGCGCAT
CAGCCGCCGGCACGGGGAAGGGTCCCAGGAGTGGCCCAACGGAGAACGAT
ACAACGGTGAATGGAAGAACGACACCCCGGACGGCCGAGGAACCTGGCTC
AGGCGAGGTGGAAGGTACACCACTCACTCACGGTGACGCACTACAGGCCC
CCATACTTGTGCGCGGTACGCAATGCGCTTGAAAAGCGTGCATGGCCGGG
ATCCCGCGACACGGTATGAAGGACGGACTCGTCGACCCTGCTGCGTCTCT
ACATACCGCTTTTTTTCTCTCGGGGCCACACCACTACCAAGTTGGCATTT
CTATGGGGGGAGAGACGCGCGTAGGATCCTCGAGCGACAACAGCGGCATT
GATTGACAATCGATATTCCCTTCGACTTGTCGACGACGCTGCATACCGTT
TCGACGCTGCCGTGTCCACTTCGGCGTGACACCTGAAGCGATACCGCTGA
CACGTTTTTACCCGTGCACGATGCACACTTGTGTTTTTTCTCTCTTTCTC
TCCTCCCCCCCTATCCTTTGGTGCGATGTTGTCTGCCTCATACATAGATA
TGCCGGTGATCTAAGCGAGGGGGTGCGGCACGGTAAGGGGGTTCTCAAGC
TCAGAAACGGAGGCGAGTACGACGGGCAGTGGGGTCGCGGACGGATGCAC
GGGTACGGCGTCTACATCTGGCCGGACGCGCAGATATACAAGGGCCAATG
GGCCGCTGGCTTGCGGCACGGAGAAGGAACCGTCTCGCTGCCATCCGGGG
AGAGGTCGGCGGTTATTCCGCGTGTTCACACTATTTATTTAACAATCGAT
GTGCGGCGACCGAAGAGGGGGGCGAGGGCCCAAATCTAGACGTGCAAAAA
GTATTCGAGGGAAGAGCTTAGCGCGAGCTGATGGTCGTGAAGCGAAGCGG
TAACAGCAGTGGTAGAGAGAGCCGCATGCCAATCGTTTTTTTTCCCCTTT
AGAAGAACCACAAGAGATTCGCGACAAACGGCGAGTCGGAGTTGGTCGGT
TGGCGGTCCGGCAAGGTGCTGGCTGCAGCGGTCGAGTCCGGCCGGCAACG
CAGCAAATGAAACCTGTCGACCAATGACCATATGCATCGACCGGGCAAAA
CACGTTTACCAGGTACAGCGGGCAGTGGAAGGAAGGGAAGAAGCACGGGG
GAGGCGTGTGGCGGTGGAGCAACGGACGAACAAGGTTCGTTTTCCCGCTA
TTTGTAGGACCGGAGAGCCCCCCCCCCCCCCCCCGAGGACAAAGAAGAAA
TCGCCGTGCGCGTCGTGGTGCCGACGGGTGAACCTTTTCATATGGGTGTT
TTCCGGTACTTGTCGCCCTGCGTTGAAAGCTGTGGTATCCTTTTTTAGGC
TTGGTGGCCACCTCGGCTATACGTACGCTTTATCCTACCAGAAAGGGTAA
CCAAGGGAGGGCAGAGTACATTAGTGCAGGTAGGTGTATGTATCATCGCC
CGCTAAGAGCGCCCGTGTAGATTCGGCAGCCTGCGAAAGGGTGTGTGTCT
GTGTCTGTGTGTGTGTGTGTGTGTGTCCTTCCCATTCATTTTGGCGACAG
TCCCCCCAAGTGGAGTTGTGTACTACACCTTGCGGTGTACTTACAGGTGC
GAAAGGGTGGTGTTCTTTTGAGGTTTTGGCGGTGGTGATCGAGGCCAGAG
CATCGCACGAATCGCCGCAACACCGTTTTTTCTCGCAGCGGCTGCCCGAG
ACGACAGTAGAAGTAGTGGCGTTTTCAAGGCGGCAATATTCTTGCGACGG
CAAAGGTGCGGCATGGAAAACCGGCTTTCCTTTCAAGCGCATGAACGCAC
TCACTTTTTCATACTATCGTTCTATCCGTTGTTGTGATCTCCCCCCCCCC
CCCCCTTCCCCCTCGCCCCCTTAAAACCTCGTTGCCATAGGCGAGGTGAG
TGGCACAAGGACGTGCTTGTGGGGTGGACTAGCGCCGAGGTGTTTGGAAG
CCAGCCTCCCCAAATAACAGCCGGGAGCGGCGGCAGCGGGAGCAACCGCA
CAGCAGGCGAAGGCGGCGGCAAATCCATTGGTGGCAGCAGCCGCAGCAGC
AGCTGCGCTTCAGCGAGAAAAGGGGCGAAACAGACGGGCGTTGGAAGCAG
CCCAAATCGAGCGAGCGGTGGTCGCAGCAGCCCTAGCGGCGGTGTTCAAA
AAGGCGCGAGCAGCGATAACAGCCCGAAGGGAGGGAGGGAGGGAGGGGGG
GGGGGGGGGGGGCGCAAGGGTGTTGCTGCTGCAGGCGGTGCCTCGGAGAA
GATTTCTGCCGGGGGGAACAACAGGAGCCGTAGCAGCAGTCCGGCGCGGC
GGGCAAGACAGAGTCCCCCAAACAGCAAGCAATGA back to topCoding sequence (CDS) from alignment at L-elsbetiae_contig6696:7075..9459- >mRNA_L-elsbetiae_contig6696.15431.1 ID=mRNA_L-elsbetiae_contig6696.15431.1|Name=mRNA_L-elsbetiae_contig6696.15431.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1776bp|location=Sequence derived from alignment at L-elsbetiae_contig6696:7075..9459- (Laminarionema elsbetiae ELsaHSoW15)
GGCGTCTTCAGCACTAAACGAGGCATTCGGTATGAGGGTGGGTGGCGCAT
CAGCCGCCGGCACGGGGAAGGGTCCCAGGAGTGGCCCAACGGAGAACGAT
ACAACGGTGAATGGAAGAACGACACCCCGGACGGCCGAGGAACCTGGCTC
AGGCGAGGTGGAAGGGCGTCTTCAGCACTAAACGAGGCATTCGGTATGAG
GGTGGGTGGCGCATCAGCCGCCGGCACGGGGAAGGGTCCCAGGAGTGGCC
CAACGGAGAACGATACAACGGTGAATGGAAGAACGACACCCCGGACGGCC
GAGGAACCTGGCTCAGGCGAGGTGGAAGATATGCCGGTGATCTAAGCGAG
GGGGTGCGGCACGGTAAGGGGGTTCTCAAGCTCAGAAACGGAGGCGAGTA
CGACGGGCAGTGGGGTCGCGGACGGATGCACGGGTACGGCGTCTACATCT
GGCCGGACGCGCAGATATACAAGGGCCAATGGGCCGCTGGCTTGCGGCAC
GGAGAAGGAACCGTCTCGCTGCCATCCGGGGAGAGATATGCCGGTGATCT
AAGCGAGGGGGTGCGGCACGGTAAGGGGGTTCTCAAGCTCAGAAACGGAG
GCGAGTACGACGGGCAGTGGGGTCGCGGACGGATGCACGGGTACGGCGTC
TACATCTGGCCGGACGCGCAGATATACAAGGGCCAATGGGCCGCTGGCTT
GCGGCACGGAGAAGGAACCGTCTCGCTGCCATCCGGGGAGAGGTACAGCG
GGCAGTGGAAGGAAGGGAAGAAGCACGGGGGAGGCGTGTGGCGGTGGAGC
AACGGACGAACAAGGTACAGCGGGCAGTGGAAGGAAGGGAAGAAGCACGG
GGGAGGCGTGTGGCGGTGGAGCAACGGACGAACAAGGCGAGGTGAGTGGC
ACAAGGACGTGCTTGTGGGGTGGACTAGCGCCGAGGTGTTTGGAAGCCAG
CCTCCCCAAATAACAGCCGGGAGCGGCGGCAGCGGGAGCAACCGCACAGC
AGGCGAAGGCGGCGGCAAATCCATTGGTGGCAGCAGCCGCAGCAGCAGCT
GCGCTTCAGCGAGAAAAGGGGCGAAACAGACGGGCGTTGGAAGCAGCCCA
AATCGAGCGAGCGGTGGTCGCAGCAGCCCTAGCGGCGGTGTTCAAAAAGG
CGCGAGCAGCGATAACAGCCCGAAGGGAGGGAGGGAGGGAGGGGGGGGGG
GGGGGGGGCGCAAGGGTGTTGCTGCTGCAGGCGGTGCCTCGGAGAAGATT
TCTGCCGGGGGGAACAACAGGAGCCGTAGCAGCAGTCCGGCGCGGCGGGC
AAGACAGAGTCCCCCAAACAGCAAGCAATGAGCGAGGTGAGTGGCACAAG
GACGTGCTTGTGGGGTGGACTAGCGCCGAGGTGTTTGGAAGCCAGCCTCC
CCAAATAACAGCCGGGAGCGGCGGCAGCGGGAGCAACCGCACAGCAGGCG
AAGGCGGCGGCAAATCCATTGGTGGCAGCAGCCGCAGCAGCAGCTGCGCT
TCAGCGAGAAAAGGGGCGAAACAGACGGGCGTTGGAAGCAGCCCAAATCG
AGCGAGCGGTGGTCGCAGCAGCCCTAGCGGCGGTGTTCAAAAAGGCGCGA
GCAGCGATAACAGCCCGAAGGGAGGGAGGGAGGGAGGGGGGGGGGGGGGG
GGGCGCAAGGGTGTTGCTGCTGCAGGCGGTGCCTCGGAGAAGATTTCTGC
CGGGGGGAACAACAGGAGCCGTAGCAGCAGTCCGGCGCGGCGGGCAAGAC
AGAGTCCCCCAAACAGCAAGCAATGA back to top
|