mRNA_L-elsbetiae_contig6696.15430.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6696.15430.1
Unique NamemRNA_L-elsbetiae_contig6696.15430.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig6696.15430.1 vs. uniprot
Match: A0A6H5JGJ1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGJ1_9PHAE)

HSP 1 Score: 175 bits (443), Expect = 7.930e-48
Identity = 81/95 (85.26%), Postives = 90/95 (94.74%), Query Frame = 3 
Query:    3 STLLVAPRLHPFNAAKFDNFARNLAIALKQTPIMDRIEVEVYHPELVCDGGIVDLDRRSPFPTLLLKHCGLKEVLFEPSGKFRAALPPLKLPLEE 287
            STLLVAPRLHPFNAA+F+NFAR LAIALKQ PI+DRIEVEVYHPELVCDGG++DLDRRSP+PTLLLKHCGLK+VLFEPSG +R  LPPLKLPLE+
Sbjct:  547 STLLVAPRLHPFNAAQFENFARTLAIALKQAPIVDRIEVEVYHPELVCDGGVIDLDRRSPYPTLLLKHCGLKDVLFEPSGNYRHVLPPLKLPLED 641
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BLAST of mRNA_L-elsbetiae_contig6696.15430.1 vs. uniprot
Match: D7G0L3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0L3_ECTSI)

HSP 1 Score: 113 bits (282), Expect = 8.860e-26
Identity = 49/64 (76.56%), Postives = 58/64 (90.62%), Query Frame = 3 
Query:  120 EVYHPELVCDGGIVDLDRRSPFPTLLLKHCGLKEVLFEPSGKFRAALPPLKLPLEEEDAAHEQD 311
            +VYHPELVCDGG++D+DRRSP+PTLLLKHCGLK+VLFEPSG +R  LPPLKLPLE+ED+  E D
Sbjct:  419 KVYHPELVCDGGVIDIDRRSPYPTLLLKHCGLKDVLFEPSGNYRHVLPPLKLPLEDEDSEDESD 482
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BLAST of mRNA_L-elsbetiae_contig6696.15430.1 vs. uniprot
Match: A0A835ZA02_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZA02_9STRA)

HSP 1 Score: 92.8 bits (229), Expect = 1.460e-18
Identity = 44/87 (50.57%), Postives = 55/87 (63.22%), Query Frame = 3 
Query:    3 STLLVAPRLHPFNAAKFDNFARNLAIALKQTPIMDRIEVEVYHPELVCDGGIVDLDRRSPFPTLLLKHCGLKEVLFEPSGKFRAALP 263
            S L VAPR H FNA  F  F   LAI LKQ+PI+D + +E+YHPE++ D G VD  RR+P+PT+  KH G K  LF    + R A P
Sbjct:  384 SALFVAPRFHSFNAEAFKKFGATLAIVLKQSPILDDMTIELYHPEVIQDDGEVDARRRAPYPTIHFKHVGKKAELFPAPRRSRVAFP 470
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6696.15430.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JGJ1_9PHAE7.930e-4885.26Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G0L3_ECTSI8.860e-2676.56Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835ZA02_9STRA1.460e-1850.57Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6696contigL-elsbetiae_contig6696:560..3147 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size589
Cds size315
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6696.15430.1prot_L-elsbetiae_contig6696.15430.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6696 661..2974 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816741.1137812-UTR-L-elsbetiae_contig6696:559..6601622816741.1137812-UTR-L-elsbetiae_contig6696:559..660Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6696 560..660 +
1691683778.8352551-UTR-L-elsbetiae_contig6696:559..6601691683778.8352551-UTR-L-elsbetiae_contig6696:559..660Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6696 560..660 +
1622816741.1651475-UTR-L-elsbetiae_contig6696:2974..31471622816741.1651475-UTR-L-elsbetiae_contig6696:2974..3147Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6696 2975..3147 +
1691683778.8774512-UTR-L-elsbetiae_contig6696:2974..31471691683778.8774512-UTR-L-elsbetiae_contig6696:2974..3147Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6696 2975..3147 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816741.1269584-CDS-L-elsbetiae_contig6696:660..6811622816741.1269584-CDS-L-elsbetiae_contig6696:660..681Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6696 661..681 +
1691683778.8464499-CDS-L-elsbetiae_contig6696:660..6811691683778.8464499-CDS-L-elsbetiae_contig6696:660..681Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6696 661..681 +
1622816741.1399047-CDS-L-elsbetiae_contig6696:1109..12371622816741.1399047-CDS-L-elsbetiae_contig6696:1109..1237Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6696 1110..1237 +
1691683778.855838-CDS-L-elsbetiae_contig6696:1109..12371691683778.855838-CDS-L-elsbetiae_contig6696:1109..1237Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6696 1110..1237 +
1622816741.1509044-CDS-L-elsbetiae_contig6696:2808..29741622816741.1509044-CDS-L-elsbetiae_contig6696:2808..2974Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6696 2809..2974 +
1691683778.8651469-CDS-L-elsbetiae_contig6696:2808..29741691683778.8651469-CDS-L-elsbetiae_contig6696:2808..2974Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6696 2809..2974 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6696.15430.1

>prot_L-elsbetiae_contig6696.15430.1 ID=prot_L-elsbetiae_contig6696.15430.1|Name=mRNA_L-elsbetiae_contig6696.15430.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=105bp
MDRIEVEVYHPELVCDGGIVDLDRRSPFPTLLLKHCGLKEVLFEPSGKFR
AALPPLKLPLEEEDAAHEQDQDQDQGESRDEKSGPSSAAPPDPAGDVAAD
DARL*
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mRNA from alignment at L-elsbetiae_contig6696:560..3147+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6696.15430.1 ID=mRNA_L-elsbetiae_contig6696.15430.1|Name=mRNA_L-elsbetiae_contig6696.15430.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2588bp|location=Sequence derived from alignment at L-elsbetiae_contig6696:560..3147+ (Laminarionema elsbetiae ELsaHSoW15)
TGTCGACCCTGCTGGTCGCACCTCGGCTGCACCCCTTCAACGCGGCAAAG
TTCGACAACTTCGCCAGGAACCTCGCCATCGCGCTCAAGCAGACGCCCAT
CATGGACAGGATCGAGGTCGAGGTGCGTGTCTCTTGGTGTGTTGTGTGTG
CGTTACTTGTTGTTGGCATCGACTGGGGCGCGCTGACCGATTGGAGACTA
GCCAATAAAAAAAGGCGTTTCGTTTCTCCCACGCTCTCAAGACGAGAAAA
AAGCACTGTATAAGGTGCGCACAGGGGGCGATTTGAGTGTTTGTCTGTCT
CTCTCTCTGTGTGTGTATGTGTGTGTGTGTTTTTTTGGGTGGTCGGAGGG
CTTTCGGTACTTTTGGATGTCGGTGTTCTCCTTTCCTTGTGCAGCTGTTG
TTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTT
GTTGTTGTTGTTGTTGCTGCTGCCGATCAATTGGGGCCCAATTCCACCAA
CGAAAACGCGCCACGAACGCCGCAACCACGCCCCCCCCCCCTCCTTGCAG
GTGTACCACCCGGAGTTGGTGTGCGACGGAGGCATCGTTGATCTCGACCG
CCGCTCGCCGTTCCCCACCCTCCTTCTCAAGCACTGCGGGCTGAAGGAAG
TGCTGTTTGAGCCAAGCGGCAAATTCAGGTGGGCGGGCTTTTGGGTGATT
CAGGGTTTTACGGCGGTACATATACATGTACCGTTCGGCGCTTGCGTTTC
GCCGTCGTTTGTTCCTCTTGGCGGCTCAACGATTTTAGCTGGGTGCGGTC
TGATCGATGCATTATCGTACGTCCCTTATATATTACTCTATAATTATTCG
TTTGGTTTATGTGTTACTTACGAGTCCCTTATATATGTACAAGATCCCCC
TTCGGAGCGAGCTCATGAGAGCACAGCGGCAGGGGGTGATGCAAGACCAA
AGCAAACAGGCGAAGGCAGCAGAAGTACTCCTAAATTTACAACTGAAAAA
AACAGCAGTTGCTGCTGTGTTTTGAGCACCGGAGCAGCAGCTGCTGTGCA
TACTGAAACGAACAAACAAACAACTGCTTCTTTTCTGTGCTGACGCTCCC
TTGAGCCAAACAGAGCTATGCCGGTCTGTGCTCATCAGGTACAATAGCTG
CCCAGTCTCCTGGCATGTGCATGCAGCCATGCTCAAAACAGCTGGTTCAT
ACTGATGTTTTTTTGGGCTGTTGGAGGCCGATAGCCTACTGATTCAGATT
TCGGAACAGAAGTTCCCAGATACCAATTTGTAGATGTATCTACTCTATAA
TTTTTCGTTTGGTGTATGTGTTGCGTGCGAGTAAAATTATCACGACGACC
CGCGTACGAACTCGGTCTGACGCTGCTCACAATACATACATGCATAGATA
CGCACTTGCAGACGTATTGTCACTACAATACATATTTGTTTTGCTTTGCG
CCTTATAGTCTTGTAGCTGCCTGCTTGCTACTACATACATCTCTGGCATG
GCACTCTACATTGCGTGCACAACAATTTTTGTTTCGGGGGGGGGGGGGCT
GCTTCTAAATCGGTTTCCAGGCGTGGATTCGCGGCAGAGTTTGGTGGCGT
TTGTATTCCCCATTACTTTACTCGCTTTCTGAAAGGCGTTACGGTCCACA
ACACCCCGTAACGGCTCCAGCATTTACTCCTGCGTCTTTTGCCTAATTTC
ACACTCGGATTTGCAAATTGCCGATTCTACACTGATCCGATGGATGCCAT
AATAGTGTGTTCAGTGTGCGCCCCAAGATTTACGAGCACGGCGTGAAGAG
AGAGGTCAAGAGCTTCTCATTCGCAGTAATGGCTTCAAAATGTTGAGAAA
AAGTCCTTGGGCAAAAACACGTTTCAGGCGCGGCCTAACCTCCGAAACGT
AGTTATTATGAACCGGAACCACGAAAAGGACTTATTATTGGGAAACGTAG
TTATTATTTGTTGTGTGATAACCACCTGATGATATTATATAAGTGTGTTT
TTTTTATTGATTAATTAATTATTTGGTTTTTGGGCAAACAATATATAGCC
CCCGTTTTTATTTTTGTGTGCGCATGGTGCCTCCCACGCTGTGCGTGCTC
GCCTGCCCACTTTCTCGCCTGCCTGCCTGCCTGCCTGCCCGCCTGCCTGC
CTGCCCGCCTCGTCTTCTTTCATTTGTTGGTTTATTTCCCCGACCTCTTC
TGCTACTAACTGTGCCTCGTTGGCGTTGCTGTCCCCCCTCTCCCCGCAGG
GCCGCTCTTCCTCCCCTCAAACTCCCGCTGGAGGAGGAGGACGCCGCTCA
CGAGCAGGACCAAGACCAAGACCAAGGCGAGAGCCGCGACGAGAAGAGCG
GCCCGTCCTCGGCGGCCCCCCCTGACCCCGCAGGCGACGTCGCCGCCGAC
GACGCCCGGCTGTAGGGTGGATGGGGTGGCGCGCGAGAGGAGGTGGGATT
CCTGCGAGAGGCTGATGGGCCCGTCAGTTGGTTGGTCTCGATCGCTGGTC
TACGGTGGTGGGAGTGCCGCCCGCCAGGGCCGCGGTGGAAACGGCCGGCT
TTTGCTCGCTCGCTCTTGTTGGCTGGGGAAGTTCTCAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6696:560..3147+

>mRNA_L-elsbetiae_contig6696.15430.1 ID=mRNA_L-elsbetiae_contig6696.15430.1|Name=mRNA_L-elsbetiae_contig6696.15430.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=630bp|location=Sequence derived from alignment at L-elsbetiae_contig6696:560..3147+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGACAGGATCGAGGTCGAGATGGACAGGATCGAGGTCGAGGTGTACCA
CCCGGAGTTGGTGTGCGACGGAGGCATCGTTGATCTCGACCGCCGCTCGC
CGTTCCCCACCCTCCTTCTCAAGCACTGCGGGCTGAAGGAAGTGCTGTTT
GAGCCAAGCGGCAAATTCAGGTGTACCACCCGGAGTTGGTGTGCGACGGA
GGCATCGTTGATCTCGACCGCCGCTCGCCGTTCCCCACCCTCCTTCTCAA
GCACTGCGGGCTGAAGGAAGTGCTGTTTGAGCCAAGCGGCAAATTCAGGG
CCGCTCTTCCTCCCCTCAAACTCCCGCTGGAGGAGGAGGACGCCGCTCAC
GAGCAGGACCAAGACCAAGACCAAGGCGAGAGCCGCGACGAGAAGAGCGG
CCCGTCCTCGGCGGCCCCCCCTGACCCCGCAGGCGACGTCGCCGCCGACG
ACGCCCGGCTGTAGGGCCGCTCTTCCTCCCCTCAAACTCCCGCTGGAGGA
GGAGGACGCCGCTCACGAGCAGGACCAAGACCAAGACCAAGGCGAGAGCC
GCGACGAGAAGAGCGGCCCGTCCTCGGCGGCCCCCCCTGACCCCGCAGGC
GACGTCGCCGCCGACGACGCCCGGCTGTAG
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