mRNA_L-elsbetiae_contig669.15424.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig669.15424.1
Unique NamemRNA_L-elsbetiae_contig669.15424.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig669.15424.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig669contigL-elsbetiae_contig669:28271..29051 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size433
Cds size429
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816740.18925-CDS-L-elsbetiae_contig669:28272..286771622816740.18925-CDS-L-elsbetiae_contig669:28272..28677Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig669 28273..28677 -
1691683778.205227-CDS-L-elsbetiae_contig669:28272..286771691683778.205227-CDS-L-elsbetiae_contig669:28272..28677Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig669 28273..28677 -
1622816740.2074416-CDS-L-elsbetiae_contig669:29027..290511622816740.2074416-CDS-L-elsbetiae_contig669:29027..29051Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig669 29028..29051 -
1691683778.222657-CDS-L-elsbetiae_contig669:29027..290511691683778.222657-CDS-L-elsbetiae_contig669:29027..29051Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig669 29028..29051 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig669.15424.1prot_L-elsbetiae_contig669.15424.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig669 28273..29051 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig669.15424.1

>prot_L-elsbetiae_contig669.15424.1 ID=prot_L-elsbetiae_contig669.15424.1|Name=mRNA_L-elsbetiae_contig669.15424.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=143bp
VDFFERAQAGRGGGGGVAGVGVGRRPNFGGGDGGISRCTSLSDSPARIAR
PAASTASATTSAAAAAGTKAPRSLARATVAPGTGAAKTAAGENRAAEQVP
GAAVGRGSGAAKATVGLARASATPGDGDSTTATSKATVAATAG
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mRNA from alignment at L-elsbetiae_contig669:28271..29051-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig669.15424.1 ID=mRNA_L-elsbetiae_contig669.15424.1|Name=mRNA_L-elsbetiae_contig669.15424.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=781bp|location=Sequence derived from alignment at L-elsbetiae_contig669:28271..29051- (Laminarionema elsbetiae ELsaHSoW15)
GTAGATTTCTTCGAACGGGCTCAGGTAAAAGCGACAGTGTTTGGAACCGG
GGGAGAGGGAAGGGGACGACACGCAAGCATGACTCCACTTATTCCAAAAT
CTCCTGTGTGAATGGCTTCGCCTATGTTTTGGGGGGAGAGGTGCGGGACA
GTAGAGTGGTGGTGTCAAAACCACCACATGGGTGATTGATTGCCAAGATC
ATTAGCGAGAGGGTGTGTATGCCAGCCCCGAAAACAAAAAGCAAGAACAA
AAATATCTTCGTCGTGATATTTGGACCCCGAGTGTTGAACGCCGCAGCAG
GCACAACAAAATTTGGTTTTAAACCTTGCTTTATATTTTGCTCTTCCCGA
CCACACCCATCACCTATCACGTAGGCCGGCAGAGGCGGAGGAGGAGGCGT
GGCAGGAGTAGGAGTTGGCCGGAGACCTAACTTTGGGGGTGGGGATGGAG
GCATCAGCAGGTGTACCAGTCTCAGTGACAGCCCCGCCAGAATAGCGAGG
CCAGCAGCATCAACAGCCTCCGCAACAACGTCAGCAGCAGCAGCAGCGGG
AACCAAGGCACCTAGATCTCTTGCAAGAGCAACGGTGGCACCAGGTACAG
GGGCAGCTAAAACCGCAGCTGGGGAAAACAGGGCAGCAGAGCAGGTACCA
GGAGCTGCTGTAGGACGAGGCTCAGGGGCAGCGAAGGCTACGGTGGGCCT
AGCGAGGGCATCGGCCACACCTGGTGATGGCGACTCCACAACGGCAACAA
GTAAGGCCACCGTCGCTGCCACAGCTGGAGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig669:28271..29051-

>mRNA_L-elsbetiae_contig669.15424.1 ID=mRNA_L-elsbetiae_contig669.15424.1|Name=mRNA_L-elsbetiae_contig669.15424.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=858bp|location=Sequence derived from alignment at L-elsbetiae_contig669:28271..29051- (Laminarionema elsbetiae ELsaHSoW15)
GTAGATTTCTTCGAACGGGCTCAGGTAGATTTCTTCGAACGGGCTCAGGC
CGGCAGAGGCGGAGGAGGAGGCGTGGCAGGAGTAGGAGTTGGCCGGAGAC
CTAACTTTGGGGGTGGGGATGGAGGCATCAGCAGGTGTACCAGTCTCAGT
GACAGCCCCGCCAGAATAGCGAGGCCAGCAGCATCAACAGCCTCCGCAAC
AACGTCAGCAGCAGCAGCAGCGGGAACCAAGGCACCTAGATCTCTTGCAA
GAGCAACGGTGGCACCAGGTACAGGGGCAGCTAAAACCGCAGCTGGGGAA
AACAGGGCAGCAGAGCAGGTACCAGGAGCTGCTGTAGGACGAGGCTCAGG
GGCAGCGAAGGCTACGGTGGGCCTAGCGAGGGCATCGGCCACACCTGGTG
ATGGCGACTCCACAACGGCAACAAGTAAGGCCACCGTCGCTGCCACAGCT
GGAGCCGGCAGAGGCGGAGGAGGAGGCGTGGCAGGAGTAGGAGTTGGCCG
GAGACCTAACTTTGGGGGTGGGGATGGAGGCATCAGCAGGTGTACCAGTC
TCAGTGACAGCCCCGCCAGAATAGCGAGGCCAGCAGCATCAACAGCCTCC
GCAACAACGTCAGCAGCAGCAGCAGCGGGAACCAAGGCACCTAGATCTCT
TGCAAGAGCAACGGTGGCACCAGGTACAGGGGCAGCTAAAACCGCAGCTG
GGGAAAACAGGGCAGCAGAGCAGGTACCAGGAGCTGCTGTAGGACGAGGC
TCAGGGGCAGCGAAGGCTACGGTGGGCCTAGCGAGGGCATCGGCCACACC
TGGTGATGGCGACTCCACAACGGCAACAAGTAAGGCCACCGTCGCTGCCA
CAGCTGGA
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